CX294912

Overview
NameCX294912
Unique NameCX294912
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length431
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9858 contig Ccv1_Contig9858:702..1132. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294912 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.857e-13
Identity = 31/66 (46.97%), Postives = 44/66 (66.67%), Query Frame = 1
Query:    1 KPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPY 198
            +P   DV A+R  G+GL TNI+NGG+EC +  ++ V NRIGF+  +C   G+  G NLDC +Q P+
Sbjct:  225 RPGPADVAANRTAGFGLVTNIVNGGLECNRAGDARVNNRIGFYRRYCQVLGVDVGPNLDCEHQQPF 290          
BLAST of CX294912 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.570e-12
Identity = 31/73 (42.47%), Postives = 45/73 (61.64%), Query Frame = 1
Query:    4 PSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPYGPNLMAQS 222
            P+  D  A R PGYGLTTNI+ GG++C  G     A+R+ F+  +C   G+  G NLDC+ Q P+  ++M+ S
Sbjct:  267 PTPADSAAGRAPGYGLTTNILTGGLQCAGGNGG--ADRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGDIMSAS 337          
BLAST of CX294912 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 7.274e-12
Identity = 31/73 (42.47%), Postives = 44/73 (60.27%), Query Frame = 1
Query:    4 PSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPYGPNLMAQS 222
            P+  D  A R PGYGLTTNI+ GG++C  G     A+R+ F+  +C   G+  G NLDC+ Q P+   +M+ S
Sbjct:  267 PTPADSAAGRAPGYGLTTNILTGGLQCAGGNGG--ADRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGGIMSAS 337          
BLAST of CX294912 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.715e-11
Identity = 29/48 (60.42%), Postives = 39/48 (81.25%), Query Frame = 1
Query:    1 KPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCG 144
            +PSA D  A+RLPG+G+ TNIINGG+ECG+G +S V +RIGF+  +CG
Sbjct:  254 QPSAADRAANRLPGFGVITNIINGGLECGRGSDSRVQDRIGFYRRYCG 301          
The following BLAST results are available for this feature:
BLAST of CX294912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
CHI10_ORYSJ3.857e-1346.97Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI7_ORYSJ5.570e-1242.47Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI7.274e-1242.47Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHI4_SOLTU4.715e-1160.42Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]

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Properties
Property NameValue
Genbank descriptionC05057D09SK PhIFruit1 Citrus clementina cDNA clone C05057D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294912 ID=CX294912; Name=CX294912; organism=Citrus clementina; type=EST; length=431bp
AAACCATCAGCAAATGACGTAAACGCCAGCCGGCTTCCGGGATACGGTCT
AACCACAAATATAATCAACGGTGGAATTGAATGTGGCAAAGGTTGGAATA
GCTTTGTAGCTAACCGTATTGGGTTCTTTACCACTTTCTGTGGCAAGTTT
GGGATTCAGCCTGGCGACAATCTTGATTGCTACAACCAAGGGCCTTATGG
CCCTAATTTGATGGCACAATCTATGTGATCATCATGATCAACGTTTTAGT
AAAATAAGCTTAATAAAAGCTACTTAATAAAAACTTTAGATGTCACACTT
GTAGGTGGACAACTAAATTGTTAGTTTGTTACGCTCTTATTGTAGGTAAA
TTAAATAAGACTGATCCAACATGGATCAATGAGTCTTCTCCNNNNNAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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