CX294917

Overview
NameCX294917
Unique NameCX294917
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length638
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ARP1_YEAST (Centractin OS=Saccharomyces cerevisiae GN=ARP1 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 9.146e-43
Identity = 82/160 (51.25%), Postives = 117/160 (73.12%), Query Frame = 1
Query:  160 QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            QP+V DNG+G++KAGF+G++ P+A+   +VG  ++  VM+   Q D ++G+ AQ  RG+L L+YPI+HG+V +WD ME IW +     L++    EHP+L+TEAP+NP  NRE+M  ++FETF+V A+YV+  AVLSLYASGRTTG V+D G+G   TVP
Sbjct:   13 QPVVIDNGSGIIKAGFSGEERPKALEYCLVGNTKYDKVMLEGLQGDTFIGNNAQKLRGLLKLRYPIKHGVVEDWDSMELIWSYVLNEVLQLQNIGEHPLLITEAPMNPLKNREQMAQVLFETFDVSALYVSNPAVLSLYASGRTTGCVVDCGEGYCSTVP 172          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ARP2_RAT (Actin-related protein 2 OS=Rattus norvegicus GN=Actr2 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.560e-42
Identity = 85/167 (50.90%), Postives = 114/167 (68.26%), Query Frame = 1
Query:  145 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            D++  + +VCDNGTG VK G+AG + P  +FP++VGRP  R T  +  +  KD  VGDEA   R +L + YP+E+GIV NWDDM+ +W +TF  E L +      +LLTE P+NP  NREK+  +MFET+    +YVAIQAVL+LYA G  TG+V+DSGDGV+H  P
Sbjct:    2 DSQGRKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTRSCKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICP 168          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ARP2_PONAB (Actin-related protein 2 OS=Pongo abelii GN=ACTR2 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.560e-42
Identity = 85/167 (50.90%), Postives = 114/167 (68.26%), Query Frame = 1
Query:  145 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            D++  + +VCDNGTG VK G+AG + P  +FP++VGRP  R T  +  +  KD  VGDEA   R +L + YP+E+GIV NWDDM+ +W +TF  E L +      +LLTE P+NP  NREK+  +MFET+    +YVAIQAVL+LYA G  TG+V+DSGDGV+H  P
Sbjct:    2 DSQGRKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICP 168          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ARP2_MOUSE (Actin-related protein 2 OS=Mus musculus GN=Actr2 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.560e-42
Identity = 85/167 (50.90%), Postives = 114/167 (68.26%), Query Frame = 1
Query:  145 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            D++  + +VCDNGTG VK G+AG + P  +FP++VGRP  R T  +  +  KD  VGDEA   R +L + YP+E+GIV NWDDM+ +W +TF  E L +      +LLTE P+NP  NREK+  +MFET+    +YVAIQAVL+LYA G  TG+V+DSGDGV+H  P
Sbjct:    2 DSQGRKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICP 168          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ARP2_HUMAN (Actin-related protein 2 OS=Homo sapiens GN=ACTR2 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.560e-42
Identity = 85/167 (50.90%), Postives = 114/167 (68.26%), Query Frame = 1
Query:  145 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            D++  + +VCDNGTG VK G+AG + P  +FP++VGRP  R T  +  +  KD  VGDEA   R +L + YP+E+GIV NWDDM+ +W +TF  E L +      +LLTE P+NP  NREK+  +MFET+    +YVAIQAVL+LYA G  TG+V+DSGDGV+H  P
Sbjct:    2 DSQGRKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICP 168          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ARP2_BOVIN (Actin-related protein 2 OS=Bos taurus GN=ACTR2 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.560e-42
Identity = 85/167 (50.90%), Postives = 114/167 (68.26%), Query Frame = 1
Query:  145 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            D++  + +VCDNGTG VK G+AG + P  +FP++VGRP  R T  +  +  KD  VGDEA   R +L + YP+E+GIV NWDDM+ +W +TF  E L +      +LLTE P+NP  NREK+  +MFET+    +YVAIQAVL+LYA G  TG+V+DSGDGV+H  P
Sbjct:    2 DSQGRKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICP 168          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ARP2A_DANRE (Actin-related protein 2-A OS=Danio rerio GN=actr2a PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.560e-42
Identity = 84/167 (50.30%), Postives = 114/167 (68.26%), Query Frame = 1
Query:  145 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            D++  + +VCDNGTG VK G+AG + P  +FP++VGRP  R T  +  +  KD  VGDEA   R +L + YP+E+GIV NWDDM+ +W +TF  E L +      +LLTE P+NP  NREK+  +MFET+    +Y+AIQAVL+LYA G  TG+V+DSGDGV+H  P
Sbjct:    2 DSQGKKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTAKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDSRNCKILLTEPPMNPTKNREKIIEVMFETYQFSGVYIAIQAVLTLYAQGLLTGVVVDSGDGVTHICP 168          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ARP2_CHICK (Actin-related protein 2 OS=Gallus gallus GN=ACTR2 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.038e-42
Identity = 84/160 (52.50%), Postives = 111/160 (69.38%), Query Frame = 1
Query:  166 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            +VCDNGTG VK G+AG + P  +FP++VGRP  R T  +  +  KD  VGDEA   R +L + YP+E+GIV NWDDM+ +W +TF  E L +  +   +LLTE P+NP  NREK+  +MFET+    +YVAIQAVL+LYA G  TG+V+DSGDGV+H  P
Sbjct:    9 VVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTAKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTKNCKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICP 168          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ACTT2_MOUSE (Actin-related protein T2 OS=Mus musculus GN=Actrt2 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.661e-42
Identity = 84/161 (52.17%), Postives = 112/161 (69.57%), Query Frame = 1
Query:  154 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            D   ++ DNG+G+ KAG +G+  PR V  S+VG P+      G  QK  +VG+EA  K+  L+L YPI+ G+V++WDD+EK+W H F  EL V P E PVL+TE  LNP+ NREK   +MFETF VPA Y++ QAVL+LY+S   TG+V+DSGDGV+ TVP
Sbjct:    8 DSPSVIFDNGSGLCKAGLSGEIGPRHVTSSVVGYPKFKAPPTGASQKKYFVGEEALYKQEALSLHYPIDRGLVTSWDDVEKLWRHLFEWELGVKPCERPVLVTEPSLNPRENREKTAEMMFETFEVPAFYLSDQAVLALYSSACVTGLVVDSGDGVTCTVP 168          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ARP2_ORYSJ (Actin-related protein 2 OS=Oryza sativa subsp. japonica GN=ARP2 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.539e-42
Identity = 83/159 (52.20%), Postives = 106/159 (66.67%), Query Frame = 1
Query:  166 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP--RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            +VCDNGTG VK GFAG++ P +VFP +VGRP  R+   +      D  VG      R  L + YP+ +GIV +WDDM  IW H FY+EL+V P E  +LLT+ PLNP  NREKM   MFE +N   +++ +QAVLSLYA G  TG+V+DSGDGV+H VP
Sbjct:    7 VVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLQEQELTDIVVGAACADLRHQLDVSYPVTNGIVQSWDDMGHIWDHAFYSELKVDPSECKILLTDPPLNPVKNREKMIETMFEKYNFAGVFIQVQAVLSLYAQGLLTGLVIDSGDGVTHVVP 165          
The following BLAST results are available for this feature:
BLAST of CX294917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 456
Match NameE-valueIdentityDescription
ARP1_YEAST9.146e-4351.25Centractin OS=Saccharomyces cerevisiae GN=ARP1 PE=... [more]
ARP2_RAT1.560e-4250.90Actin-related protein 2 OS=Rattus norvegicus GN=Ac... [more]
ARP2_PONAB1.560e-4250.90Actin-related protein 2 OS=Pongo abelii GN=ACTR2 P... [more]
ARP2_MOUSE1.560e-4250.90Actin-related protein 2 OS=Mus musculus GN=Actr2 P... [more]
ARP2_HUMAN1.560e-4250.90Actin-related protein 2 OS=Homo sapiens GN=ACTR2 P... [more]
ARP2_BOVIN1.560e-4250.90Actin-related protein 2 OS=Bos taurus GN=ACTR2 PE=... [more]
ARP2A_DANRE1.560e-4250.30Actin-related protein 2-A OS=Danio rerio GN=actr2a... [more]
ARP2_CHICK2.038e-4252.50Actin-related protein 2 OS=Gallus gallus GN=ACTR2 ... [more]
ACTT2_MOUSE2.661e-4252.17Actin-related protein T2 OS=Mus musculus GN=Actrt2... [more]
ARP2_ORYSJ4.539e-4252.20Actin-related protein 2 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionC05057E04SK PhIFruit1 Citrus clementina cDNA clone C05057E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294917 ID=CX294917; Name=CX294917; organism=Citrus clementina; type=EST; length=638bp
CTCGTGCCGAATTCGGCACGAGGTTTTTAATCTCTCGGCAGTACCAAATA
CAGAGCGATAGAGAGAATCGACACTCTCAGCTAGACTCCATCTTCGAATT
TTTCTCTCGTCGTCTCTTCAATCTAACTTTTATAAAAAATGGCCGATGCT
GAGGATATTCAACCCCTTGTTTGTGACAATGGAACTGGAATGGTGAAGGC
TGGATTTGCTGGAGATGATGCTCCAAGGGCAGTATTCCCTAGTATTGTTG
GTAGGCCTCGACACACTGGAGTCATGGTTGGAATGGGGCAGAAGGATGCC
TATGTTGGTGATGAGGCCCAATCGAAAAGAGGTATTCTTACTTTGAAATA
CCCAATTGAGCACGGTATTGTAAGCAACTGGGATGATATGGAAAAGATCT
GGCATCATACCTTCTACAACGAGCTTCGTGTTGCTCCTGAAGAGCACCCA
GTGCTTCTCACTGAGGCACCTCTTAACCCCAAGGCCAACAGAGAGAAGAT
GACCCANATTATGTTTGAAACTTTCAATGTGCCAGCCATGTACGTTGCCA
TCCAGGCTGTTCTATCTCTTTATGCCAGTGGTCGTACAACTGGTATTGTG
CTGGATTCTGGTGATGGTGTGTCTCATACTGTACCATT
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