CX294917

Overview
NameCX294917
Unique NameCX294917
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length638
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ACL7B_MOUSE (Actin-like protein 7B OS=Mus musculus GN=Actl7b PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.042e-34
Identity = 69/161 (42.86%), Postives = 104/161 (64.60%), Query Frame = 1
Query:  157 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR-HTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            I+ LV D G+   K G+AG+  P     S VG+ R       G   K+ YVG E  +    L L  P++HG+V +WD ++ IW + F+  +++ PEEH VL+++ PL+P +NREK   ++FETF +PAM+V  QA+LS+Y+ G+T+G+V++SG GVSH VP
Sbjct:   51 IKALVIDLGSQYCKCGYAGEPRPTYFISSTVGKRRPEMAADAGDNFKETYVGHELLNMEASLKLVNPLKHGVVVDWDCIQNIWEYIFHTAMKIMPEEHAVLVSDPPLSPTSNREKYAELLFETFGIPAMHVTSQALLSIYSYGKTSGLVVESGHGVSHVVP 211          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ACL7A_MOUSE (Actin-like protein 7A OS=Mus musculus GN=Actl7a PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.042e-34
Identity = 70/162 (43.21%), Postives = 103/162 (63.58%), Query Frame = 1
Query:  151 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            E  + +V D GTG  K GFAG   P     + VG+P       G  +K+ +VG E  +    L L  P+ HGI+ +WD ++ IW + F  E+++APEEH VL+++ PL+P  NREK   ++FETFN PAM++A Q+ LS+Y+ GRT+G+V++ G GVS+ VP
Sbjct:   72 EVTKAVVVDLGTGFCKCGFAGLPKPTHKISTTVGKPYMETAKTGDNRKETFVGHELFNPDIHLKLVNPLRHGIIVDWDTVQDIWEYLFRQEMKIAPEEHAVLVSDPPLSPHTNREKYAEMLFETFNTPAMHIAYQSRLSMYSYGRTSGLVVEVGHGVSYVVP 233          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ARP3_CAEEL (Actin-related protein 3 OS=Caenorhabditis elegans GN=arx-1 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.667e-34
Identity = 79/184 (42.93%), Postives = 103/184 (55.98%), Query Frame = 1
Query:  148 AEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTG------------VMVGMGQKDAYVGDEAQSKRGI-LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVP 636
            A  +   V DNGTG  K G+AG+  P+ + PS +                   V  G+   D ++GDEA S      T+KYPI HGIV +WD ME+ W    +  LR  PE+H  LLTE PLN   NRE    IMFE+FNVP +Y+A+QAVL+L AS  +        TG+V+DSGDGV+H +P
Sbjct:    3 AHQLPACVIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVASSNSQAMRWNNRVGAGIDDLDFFIGDEALSPAATNYTVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDHFFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALTASWNSREANERSLTGLVIDSGDGVTHCIP 186          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ACL7B_RAT (Actin-like protein 7B OS=Rattus norvegicus GN=Actl7b PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.667e-34
Identity = 70/161 (43.48%), Postives = 103/161 (63.98%), Query Frame = 1
Query:  157 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVG-RPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            I+ LV D G+   K G+AG+  P     S VG R        G   K+ YVG E  +    L L  P++HG+V +WD ++ IW + F+  +++ PEEH VL+++ PL+P +NREK   +MFETF +PAM+V  QA+LS+Y+ G+T+G+V++SG GVSH VP
Sbjct:   50 IKALVIDLGSQYCKCGYAGEPRPTYFISSTVGKRSAEMAADAGDTFKETYVGHELLNMEASLKLVNPLKHGVVVDWDCIQNIWEYIFHTAMKILPEEHAVLVSDPPLSPTSNREKYAELMFETFGIPAMHVTSQALLSIYSYGKTSGLVVESGHGVSHVVP 210          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ACL7A_RAT (Actin-like protein 7A OS=Rattus norvegicus GN=Actl7a PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.667e-34
Identity = 70/162 (43.21%), Postives = 103/162 (63.58%), Query Frame = 1
Query:  151 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            E  + +V D GTG  K GFAG   P     + VG+P       G  +K+ +VG E  +    L L  P+ HGI+ +WD ++ IW + F  E+++APEEH VL+++ PL+P  NREK   ++FETFN PAM++A Q+ LS+Y+ GRT+G+V++ G GVS+ VP
Sbjct:   72 EVTKAVVVDLGTGFCKCGFAGLPKPTHKISTTVGKPYMETAKTGDNRKETFVGRELFNPDIHLKLVNPLRHGIIVDWDTVQDIWEYLFRQEMKIAPEEHAVLVSDPPLSPHTNREKYAEMLFETFNTPAMHIAYQSRLSMYSYGRTSGLVVEVGHGVSYVVP 233          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ACL7A_BOVIN (Actin-like protein 7A OS=Bos taurus GN=ACTL7A PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.484e-34
Identity = 70/167 (41.92%), Postives = 104/167 (62.28%), Query Frame = 1
Query:  136 KMADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            K    E  + +V D GTG  K GFAG   P     + VG+P       G  +K+ +VG E  +    L L  P+ HGI+ +WD ++ IW + F+ E+++APEEH VL+++ PL+P  NREK   ++FETF  PAM++A Q+ LS+Y+ GRT+G+V++ G GVS+ VP
Sbjct:   65 KKPKLELTKAVVVDLGTGYCKCGFAGLPKPTHRISTTVGKPYMETAKTGDNRKETFVGHELINPEVRLKLINPLRHGIIVDWDTVQDIWEYLFHQEMKIAPEEHAVLVSDPPLSPHTNREKYAEMLFETFKTPAMHIAYQSRLSMYSYGRTSGLVVEVGHGVSYVVP 231          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ARP3_CAEBR (Actin-related protein 3 OS=Caenorhabditis briggsae GN=arx-1 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.324e-33
Identity = 78/178 (43.82%), Postives = 103/178 (57.87%), Query Frame = 1
Query:  169 VCDNGTGMVKAGFAGDDAPRAVFPSIVG-------------RPRHTGVMVGMGQKDAYVGDEAQSKRGI-LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVP 636
            V DNGTG  K G+AG+  P+ + PS +              R  +     G+   D ++GDEA S      T+KYPI HGIV +WD ME+ W    +  LR  PE+H  LLTE PLN   NRE    IMFE+FNVP +Y+A+QAVL+L AS ++        TG+V+DSGDGV+H +P
Sbjct:   10 VIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVASSNAQALRWNNRVGGAGIDDLDFFIGDEALSPAASNYTVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDHFFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALTASWQSREASDRSLTGLVIDSGDGVTHCIP 187          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ACL7B_BOVIN (Actin-like protein 7B OS=Bos taurus GN=ACTL7B PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.324e-33
Identity = 66/160 (41.25%), Postives = 104/160 (65.00%), Query Frame = 1
Query:  157 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            I+ L+ D G+   K G+AG+  P     S VG+        G  +K+ YVG E  +    L L  P+++GIV +WD ++ IW + F+  +++ PEEH VL+++ PL+P +NREK   ++FETF +PAM+V  Q++LS+Y+ G+T+G+V++SG GVSH VP
Sbjct:   51 IKALITDLGSQYCKCGYAGEPRPTYFISSTVGKRYSEAADSGDTRKETYVGHELLNMEAPLKLINPLKYGIVVDWDCIQSIWEYIFHTAMKILPEEHAVLVSDPPLSPTSNREKYAELLFETFGIPAMHVTSQSLLSIYSYGKTSGLVVESGHGVSHVVP 210          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ARP3_SCHPO (Actin-related protein 3 OS=Schizosaccharomyces pombe GN=act2 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.729e-33
Identity = 79/190 (41.58%), Postives = 105/190 (55.26%), Query Frame = 1
Query:  163 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVG---------MGQK--------------DAYVGDEAQSKRGI-LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVP 636
            P++ DNGTG  K G+AG+DAP  VFP+++   R  G   G         M  K              D ++G++A  K     +L YPI HG + NWD ME+ W  + +  LR  PE+H  LLTE PLNP  NRE    IMFE+FN   +Y+A+QAVL+L AS  +        TG V+DSGDGV+H +P
Sbjct:    7 PIIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSKRATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIP 195          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ACTL9_RAT (Actin-like protein 9 OS=Rattus norvegicus GN=Actl9 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.852e-33
Identity = 68/157 (43.31%), Postives = 103/157 (65.61%), Query Frame = 1
Query:  166 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            +V D GTG+ K GFAG   P  +  +IVG        +   + + ++G+ A + R  LTL +P+ +GIV +W+  E IW H   N+LR+  ++HP+L T+ P NP +NREK+  + FE+ + PA+YVA Q+VLS+YA+GR  G+V+D+G GVS+TVP
Sbjct:   47 VVIDMGTGICKMGFAGQTRPTYIVRNIVGCQPKRRTTMEQPKMEMFIGEAAHA-RPELTLMHPVRNGIVVDWEAAEFIWRHILENDLRLDTQDHPLLFTDPPFNPASNREKLVEVAFESLHSPAIYVASQSVLSVYANGRVNGLVVDTGHGVSYTVP 202          
The following BLAST results are available for this feature:
BLAST of CX294917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 456
Match NameE-valueIdentityDescription
ACL7B_MOUSE2.042e-3442.86Actin-like protein 7B OS=Mus musculus GN=Actl7b PE... [more]
ACL7A_MOUSE2.042e-3443.21Actin-like protein 7A OS=Mus musculus GN=Actl7a PE... [more]
ARP3_CAEEL2.667e-3442.93Actin-related protein 3 OS=Caenorhabditis elegans ... [more]
ACL7B_RAT2.667e-3443.48Actin-like protein 7B OS=Rattus norvegicus GN=Actl... [more]
ACL7A_RAT2.667e-3443.21Actin-like protein 7A OS=Rattus norvegicus GN=Actl... [more]
ACL7A_BOVIN3.484e-3441.92Actin-like protein 7A OS=Bos taurus GN=ACTL7A PE=2... [more]
ARP3_CAEBR1.324e-3343.82Actin-related protein 3 OS=Caenorhabditis briggsae... [more]
ACL7B_BOVIN1.324e-3341.25Actin-like protein 7B OS=Bos taurus GN=ACTL7B PE=2... [more]
ARP3_SCHPO1.729e-3341.58Actin-related protein 3 OS=Schizosaccharomyces pom... [more]
ACTL9_RAT3.852e-3343.31Actin-like protein 9 OS=Rattus norvegicus GN=Actl9... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05057E04SK PhIFruit1 Citrus clementina cDNA clone C05057E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294917 ID=CX294917; Name=CX294917; organism=Citrus clementina; type=EST; length=638bp
CTCGTGCCGAATTCGGCACGAGGTTTTTAATCTCTCGGCAGTACCAAATA
CAGAGCGATAGAGAGAATCGACACTCTCAGCTAGACTCCATCTTCGAATT
TTTCTCTCGTCGTCTCTTCAATCTAACTTTTATAAAAAATGGCCGATGCT
GAGGATATTCAACCCCTTGTTTGTGACAATGGAACTGGAATGGTGAAGGC
TGGATTTGCTGGAGATGATGCTCCAAGGGCAGTATTCCCTAGTATTGTTG
GTAGGCCTCGACACACTGGAGTCATGGTTGGAATGGGGCAGAAGGATGCC
TATGTTGGTGATGAGGCCCAATCGAAAAGAGGTATTCTTACTTTGAAATA
CCCAATTGAGCACGGTATTGTAAGCAACTGGGATGATATGGAAAAGATCT
GGCATCATACCTTCTACAACGAGCTTCGTGTTGCTCCTGAAGAGCACCCA
GTGCTTCTCACTGAGGCACCTCTTAACCCCAAGGCCAACAGAGAGAAGAT
GACCCANATTATGTTTGAAACTTTCAATGTGCCAGCCATGTACGTTGCCA
TCCAGGCTGTTCTATCTCTTTATGCCAGTGGTCGTACAACTGGTATTGTG
CTGGATTCTGGTGATGGTGTGTCTCATACTGTACCATT
back to top