CX294917

Overview
NameCX294917
Unique NameCX294917
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length638
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ARP3_ORYSI (Actin-related protein 3 OS=Oryza sativa subsp. indica GN=ARP3 PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 6.799e-30
Identity = 78/191 (40.84%), Postives = 102/191 (53.40%), Query Frame = 1
Query:  145 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIV-------GRPR------------HTGVMVGMGQKDAYVGDEAQSKR---GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRT-----TGIVLDSGDGVSHTVP 636
            DA     +V DNGTG  K GFAG+  P  + P++V       G+ R              GVM  +   D ++G++A ++        L YPI +G V NWD ME+ W    +N LR  PE+H  LLTE+PL P   RE    IMFETFNVP +Y+A Q VL+L A   T     TG+V+D GDG +H VP
Sbjct:    2 DAASRPAVVIDNGTGYTKMGFAGNVEPCFITPTVVAVNDTFAGQTRANTTKGNWMAQHSAGVMADL---DFFIGEDALARSRSSNTYNLSYPIHNGQVENWDTMERFWQQCIFNYLRCDPEDHYFLLTESPLTPPETREYTGEIMFETFNVPGLYIACQPVLALAAGYTTTKCEMTGVVVDVGDGATHIVP 189          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ARP4_ORYSJ (Actin-related protein 4 OS=Oryza sativa subsp. japonica GN=ARP4 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.160e-29
Identity = 68/185 (36.76%), Postives = 101/185 (54.59%), Query Frame = 1
Query:  139 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTG-------------------------VMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDG 618
            M   +++  +V D G+   KAG+AGDD P+AVFPS+VG    TG                         V     ++  YVG E + +R  + +  P++ G V++WD ++ IW+H F   L + PEEHP+L+ E   N    REK   +MFE + VPA+++A  AVL+ +ASGR T +V+DSG G
Sbjct:    1 MYGGDEVSAIVIDVGSYSCKAGYAGDDTPKAVFPSVVGSIEQTGETDEAKADKEAEAASDSKNGAKPMDVDKAKTKRKLYVGQELEFRRDHMEVISPMKDGTVTDWDIVDNIWNHAFRQRLLINPEEHPMLIAEPSTNTGQQREKAAELMFEKYKVPALFLAKNAVLTSFASGRATSLVVDSGGG 185          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ARP4_ORYSI (Actin-related protein 4 OS=Oryza sativa subsp. indica GN=ARP4 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.160e-29
Identity = 68/185 (36.76%), Postives = 101/185 (54.59%), Query Frame = 1
Query:  139 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTG-------------------------VMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDG 618
            M   +++  +V D G+   KAG+AGDD P+AVFPS+VG    TG                         V     ++  YVG E + +R  + +  P++ G V++WD ++ IW+H F   L + PEEHP+L+ E   N    REK   +MFE + VPA+++A  AVL+ +ASGR T +V+DSG G
Sbjct:    1 MYGGDEVSAIVIDVGSYSCKAGYAGDDTPKAVFPSVVGSIEQTGETDEAKADKEAEAASDSKNGAKPMDVDKAKTKRKLYVGQELEFRRDHMEVISPMKDGTVTDWDIVDNIWNHAFRQRLLINPEEHPMLIAEPSTNTGQQREKAAELMFEKYKVPALFLAKNAVLTSFASGRATSLVVDSGGG 185          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ARP4_ARATH (Actin-related protein 4 OS=Arabidopsis thaliana GN=ARP4 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.755e-29
Identity = 69/188 (36.70%), Postives = 104/188 (55.32%), Query Frame = 1
Query:  139 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVG---------------------RPRHTGVMVGMGQKDAYVGDEAQS-KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            M   +++  +V D G+   KAG+AG+DAP+AVFPS++G                         T       ++  YVG +A S +R  + +  PI+ GIVS+WD ++ IW H F + L + P EHP+LL E PLN +  REK   +MFE + VPA+++A   VL+ +A+GR T +V+D G G +   P
Sbjct:    1 MYGGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIGAVDGVEAMDVDVDSTKTNSNSEDSKTESEKEKSKRKLYVGSQAMSYRRDHMEVLSPIKDGIVSDWDLVDNIWEHAFKSCLMIDPTEHPMLLAEPPLNTQQQREKAAELMFEKYKVPALFMAKNPVLTSFATGRATSLVVDCGGGSTTISP 188          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ACL6B_RAT (Actin-like protein 6B OS=Rattus norvegicus GN=Actl6b PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 5.042e-25
Identity = 61/170 (35.88%), Postives = 102/170 (60.00%), Query Frame = 1
Query:  151 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVG--RPRHTGVMVGMGQKDA-----YVGDEA-QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            +++  LV D G+  V+AG+AG+D P+A FP+ VG       G +   G+K+      ++   A    R    +  P+++G++ +W+    I  HT+   ++  P  HPVL++EAP N +A REK+T +MFE +N+PA ++   AVL+ +A+GR+TG+VLDSG   +  +P
Sbjct:    9 DEVGALVFDIGSFSVRAGYAGEDCPKADFPTTVGLLAAEEGGGLELEGEKEKKGKIFHIDTNALHVPRDGAEVMSPLKNGMIEDWECFRAILDHTYSKHVKSEPNLHPVLMSEAPWNTRAKREKLTELMFEQYNIPAFFLCKTAVLTAFANGRSTGLVLDSGATHTTAIP 178          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ACL6B_MOUSE (Actin-like protein 6B OS=Mus musculus GN=Actl6b PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.042e-25
Identity = 61/170 (35.88%), Postives = 102/170 (60.00%), Query Frame = 1
Query:  151 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVG--RPRHTGVMVGMGQKDA-----YVGDEA-QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            +++  LV D G+  V+AG+AG+D P+A FP+ VG       G +   G+K+      ++   A    R    +  P+++G++ +W+    I  HT+   ++  P  HPVL++EAP N +A REK+T +MFE +N+PA ++   AVL+ +A+GR+TG+VLDSG   +  +P
Sbjct:    9 DEVGALVFDIGSFSVRAGYAGEDCPKADFPTTVGLLAAEEGGGLELEGEKEKKGKIFHIDTNALHVPRDGAEVMSPLKNGMIEDWECFRAILDHTYSKHVKSEPNLHPVLMSEAPWNTRAKREKLTELMFEQYNIPAFFLCKTAVLTAFANGRSTGLVLDSGATHTTAIP 178          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ACL6B_BOVIN (Actin-like protein 6B OS=Bos taurus GN=ACTL6B PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.042e-25
Identity = 61/170 (35.88%), Postives = 102/170 (60.00%), Query Frame = 1
Query:  151 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVG--RPRHTGVMVGMGQKDA-----YVGDEA-QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            +++  LV D G+  V+AG+AG+D P+A FP+ VG       G +   G+K+      ++   A    R    +  P+++G++ +W+    I  HT+   ++  P  HPVL++EAP N +A REK+T +MFE +N+PA ++   AVL+ +A+GR+TG+VLDSG   +  +P
Sbjct:    9 DEVGALVFDIGSFSVRAGYAGEDCPKADFPTTVGLLAAEEGGGLELEGEKEKKGKIFHIDTNALHVPRDGAEVMSPLKNGMIEDWECFRAILDHTYSKHVKSEPNLHPVLMSEAPWNTRAKREKLTELMFEQYNIPAFFLCKTAVLTAFANGRSTGLVLDSGATHTTAIP 178          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ACL6B_HUMAN (Actin-like protein 6B OS=Homo sapiens GN=ACTL6B PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.600e-25
Identity = 61/170 (35.88%), Postives = 101/170 (59.41%), Query Frame = 1
Query:  151 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVG--RPRHTGVMVGMGQKDA-----YVGDEA-QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            +++  LV D G+  V+AG+AG+D P+A FP+ VG       G +   G K+      ++   A    R    +  P+++G++ +W+    I  HT+   ++  P  HPVL++EAP N +A REK+T +MFE +N+PA ++   AVL+ +A+GR+TG+VLDSG   +  +P
Sbjct:    9 DEVGALVFDIGSFSVRAGYAGEDCPKADFPTTVGLLAAEEGGGLELEGDKEKKGKIFHIDTNALHVPRDGAEVMSPLKNGMIEDWECFRAILDHTYSKHVKSEPNLHPVLMSEAPWNTRAKREKLTELMFEQYNIPAFFLCKTAVLTAFANGRSTGLVLDSGATHTTAIP 178          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ACL6A_MACFA (Actin-like protein 6A OS=Macaca fascicularis GN=ACTL6A PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.502e-24
Identity = 61/173 (35.26%), Postives = 102/173 (58.96%), Query Frame = 1
Query:  151 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVG----RPRHTGVMVGMGQKDA------YVGDEA-QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            +++  LV D G+  V+AG+AG+D P+  FP+ +G    R   + +M   G K        Y+   A +  R  +    P+++G+V +WD  + I  HT+   ++     HPVL++EAP N +A REK+T +MFE +N+PA ++   AVL+ +A+GR+TG++LDSG   +  +P
Sbjct:    9 DEVGALVFDIGSYTVRAGYAGEDCPKVDFPTAIGMVVERDDGSTLMEIDGDKGKQGGPTYYIATNALRVPRENMEAISPLKNGMVEDWDSFQAILDHTYKMHVKSEASLHPVLMSEAPWNTRAKREKLTELMFEHYNIPAFFLCKTAVLTAFANGRSTGLILDSGATHTTAIP 181          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ACL6A_HUMAN (Actin-like protein 6A OS=Homo sapiens GN=ACTL6A PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.268e-24
Identity = 60/173 (34.68%), Postives = 101/173 (58.38%), Query Frame = 1
Query:  151 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVG----RPRHTGVMVGMGQKDAYVG-------DEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            +++  LV D G+  V+AG+AG+D P+  FP+ +G    R   + +M   G K    G       +  +  R  +    P+++G+V +WD  + I  HT+   ++     HPVL++EAP N +A REK+T +MFE +N+PA ++   AVL+ +A+GR+TG++LDSG   +  +P
Sbjct:    9 DEVGALVFDIGSYTVRAGYAGEDCPKVDFPTAIGMVVERDDGSTLMEIDGDKGKQGGPTYYIDTNALRVPRENMEAISPLKNGMVEDWDSFQAILDHTYKMHVKSEASLHPVLMSEAPWNTRAKREKLTELMFEHYNIPAFFLCKTAVLTAFANGRSTGLILDSGATHTTAIP 181          
The following BLAST results are available for this feature:
BLAST of CX294917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 456
Match NameE-valueIdentityDescription
ARP3_ORYSI6.799e-3040.84Actin-related protein 3 OS=Oryza sativa subsp. ind... [more]
ARP4_ORYSJ1.160e-2936.76Actin-related protein 4 OS=Oryza sativa subsp. jap... [more]
ARP4_ORYSI1.160e-2936.76Actin-related protein 4 OS=Oryza sativa subsp. ind... [more]
ARP4_ARATH5.755e-2936.70Actin-related protein 4 OS=Arabidopsis thaliana GN... [more]
ACL6B_RAT5.042e-2535.88Actin-like protein 6B OS=Rattus norvegicus GN=Actl... [more]
ACL6B_MOUSE5.042e-2535.88Actin-like protein 6B OS=Mus musculus GN=Actl6b PE... [more]
ACL6B_BOVIN5.042e-2535.88Actin-like protein 6B OS=Bos taurus GN=ACTL6B PE=2... [more]
ACL6B_HUMAN8.600e-2535.88Actin-like protein 6B OS=Homo sapiens GN=ACTL6B PE... [more]
ACL6A_MACFA2.502e-2435.26Actin-like protein 6A OS=Macaca fascicularis GN=AC... [more]
ACL6A_HUMAN3.268e-2434.68Actin-like protein 6A OS=Homo sapiens GN=ACTL6A PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05057E04SK PhIFruit1 Citrus clementina cDNA clone C05057E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294917 ID=CX294917; Name=CX294917; organism=Citrus clementina; type=EST; length=638bp
CTCGTGCCGAATTCGGCACGAGGTTTTTAATCTCTCGGCAGTACCAAATA
CAGAGCGATAGAGAGAATCGACACTCTCAGCTAGACTCCATCTTCGAATT
TTTCTCTCGTCGTCTCTTCAATCTAACTTTTATAAAAAATGGCCGATGCT
GAGGATATTCAACCCCTTGTTTGTGACAATGGAACTGGAATGGTGAAGGC
TGGATTTGCTGGAGATGATGCTCCAAGGGCAGTATTCCCTAGTATTGTTG
GTAGGCCTCGACACACTGGAGTCATGGTTGGAATGGGGCAGAAGGATGCC
TATGTTGGTGATGAGGCCCAATCGAAAAGAGGTATTCTTACTTTGAAATA
CCCAATTGAGCACGGTATTGTAAGCAACTGGGATGATATGGAAAAGATCT
GGCATCATACCTTCTACAACGAGCTTCGTGTTGCTCCTGAAGAGCACCCA
GTGCTTCTCACTGAGGCACCTCTTAACCCCAAGGCCAACAGAGAGAAGAT
GACCCANATTATGTTTGAAACTTTCAATGTGCCAGCCATGTACGTTGCCA
TCCAGGCTGTTCTATCTCTTTATGCCAGTGGTCGTACAACTGGTATTGTG
CTGGATTCTGGTGATGGTGTGTCTCATACTGTACCATT
back to top