CX294917

Overview
NameCX294917
Unique NameCX294917
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length638
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ACL6A_MOUSE (Actin-like protein 6A OS=Mus musculus GN=Actl6a PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.242e-23
Identity = 59/173 (34.10%), Postives = 101/173 (58.38%), Query Frame = 1
Query:  151 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVG----RPRHTGVMVGMGQKDAYVG-------DEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            +++  LV D G+  V+AG+AG+D P+  FP+ +G    R   + +M   G K    G       +  +  R  +    P+++G+V +WD  + I  HT+   ++     HPVL++EAP N +A REK+T +MFE +++PA ++   AVL+ +A+GR+TG++LDSG   +  +P
Sbjct:    9 DEVGALVFDIGSYTVRAGYAGEDCPKVDFPTAIGVVLERDDGSTMMEIDGDKGKQGGPTYYIDTNALRVPRENMEAISPLKNGMVEDWDSFQAILDHTYKMHVKSEASLHPVLMSEAPWNTRAKREKLTELMFEHYSIPAFFLCKTAVLTAFANGRSTGLILDSGATHTTAIP 181          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ACT1_PSEMZ (Actin-1 (Fragment) OS=Pseudotsuga menziesii PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.900e-22
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 1
Query:  349 YPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK 483
            YPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK
Sbjct:    1 YPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK 45          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ACTL8_HUMAN (Actin-like protein 8 OS=Homo sapiens GN=ACTL8 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.518e-21
Identity = 60/165 (36.36%), Postives = 90/165 (54.55%), Query Frame = 1
Query:  166 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGR--------PRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            ++ D+G+G +KAG AG + P+ VFP+IV          P +    V +G    +            T  YPIE G + NW+ ++ +W     N  R   E  PV++TE PL   A+R+KM  I+FE  +VP++ +A Q  +SLYASG  TG+V+DSG G++   P
Sbjct:    6 VIIDHGSGFLKAGTAGWNEPQMVFPNIVNYLPCKENPGPSYARRRVSLGIDICHPD----------TFSYPIERGRILNWEGVQYLWSFVLENHRR-EQEVPPVIITETPLREPADRKKMLEILFELLHVPSVLLADQLQMSLYASGLLTGVVVDSGYGLTRVQP 159          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ARP5_SCHPO (Actin-like protein arp5 OS=Schizosaccharomyces pombe GN=arp5 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.739e-20
Identity = 54/161 (33.54%), Postives = 92/161 (57.14%), Query Frame = 1
Query:  163 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTL-KYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVP 636
            PLV DNG+  ++AG+ G+  P+ VF ++V R R       + +    VG++   + G  ++ + P E  ++SNWD ME++  +TF  +L +   EHP+ +TE   NP   R  MT ++FE +N P++   I  + S Y + +  ++GIVL+ G+  SH +P
Sbjct:   26 PLVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIP 181          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ARP4A_ARATH (Actin-related protein 4A OS=Arabidopsis thaliana GN=ARP4A PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.052e-19
Identity = 49/136 (36.03%), Postives = 76/136 (55.88%), Query Frame = 1
Query:  139 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVG---------------MGQKDAYVGDEAQS-KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 498
            M   +++  +V D G+   KAG+AG+DAP+AVFPS+VG     G+ +                 G++  Y G +A + +R  + +  P + GIV++WD ++ +W H F N L + P EHP+LL E PLN +  REK
Sbjct:    1 MYGGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVVGAIDGNGMDIDDAANTTEDAKESDKEKGKRKLYTGSQALNFRRDQMEILSPTKDGIVTDWDMVDNVWDHAFRNCLMIDPTEHPMLLAEPPLNSQQQREK 136          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ARP4_YARLI (Actin-related protein 4 OS=Yarrowia lipolytica GN=ARP4 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.797e-18
Identity = 52/169 (30.77%), Postives = 85/169 (50.30%), Query Frame = 1
Query:  151 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAY-------VGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            +++  LV D G+   + G+AG+D P+ V  +  G      V +     +         VGD A      + + +P+  GIV++WD ++ IW ++    L    + HP++LTE   N +AN+ K   I FE+  VPA Y+   AV S +A+G+   +VLD G  V+   P
Sbjct:   14 DEVATLVIDTGSSYTRVGYAGEDTPKLVVSTECGLMADEDVEMEDDTSNTTKKLNKYKVGDSANLPLPNMEVLHPLTDGIVADWDAVQNIWEYSLAR-LNADTKTHPLMLTEPCWNTQANKLKALEIAFESLEVPASYLVKDAVASAFAAGKGNALVLDVGSEVASVTP 181          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ARP4_SCHPO (Actin-related protein 4 OS=Schizosaccharomyces pombe GN=arp4 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.330e-17
Identity = 51/154 (33.12%), Postives = 80/154 (51.95%), Query Frame = 1
Query:  151 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSG 612
            +++  +V D G+   + GF+G+D P+ V PS  G       + G    + Y+    +S  G + +K  I +G V NWD    +W +    +L+  P EHP+L+TE   NP  NR K    MFE+   PA Y+A Q   + +ASG+ T  ++D G
Sbjct:    9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNPG-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFESLRCPATYLAKQETCAAFASGKGTACLVDIG 154          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ARP42_SCHPO (SWI/SNF and RSC complexes subunit arp42 OS=Schizosaccharomyces pombe GN=arp42 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.620e-17
Identity = 48/164 (29.27%), Postives = 87/164 (53.05%), Query Frame = 1
Query:  151 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI--LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            E+I  LV D G+   + G+AG+++P  + PS      + GV   +  ++ YV DE Q    I  + +K    +GI+ +W+     W      +L+V P E+ +++TE   NP++ R+++    FE  +VPA Y+  QAV   +A+ ++T +++D G   +   P
Sbjct:    8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTP 165          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: CT134_MOUSE (Putative uncharacterized actin family protein C20orf134 homolog OS=Mus musculus PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.470e-16
Identity = 37/96 (38.54%), Postives = 62/96 (64.58%), Query Frame = 1
Query:  349 YPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            +PI+HG+V +WD +E +W       L+V PE+ PVL++++P  P   REK+  ++FE   VPA ++A  A+L+L + G  +G+ +++G GV H  P
Sbjct:   37 HPIKHGVVVDWDALEGLWERLMVGGLQVHPEQWPVLVSDSPSAPPKGREKVAELLFEALTVPACHMANTALLALCSIGAFSGLAVEAGAGVCHATP 132          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ARP7_ARATH (Actin-related protein 7 OS=Arabidopsis thaliana GN=ARP7 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.470e-16
Identity = 61/162 (37.65%), Postives = 83/162 (51.23%), Query Frame = 1
Query:  157 IQPLVCDNGTGMVKAGFA-GDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            ++ LV D G+  +KAG A  D +P  + PS + R      MV  G   A   D   +    +TL  PIE G++ +WD ME +  +  Y  L      E  +L T+    PKA RE++  +MFETFNV   Y + QAVLSLYA GR +G  +D G G     P
Sbjct:    1 MEALVVDAGSKFLKAGAAIPDQSPAMIIPSQMKR------MVDDGSSSA---DNPTTVFEDVTLD-PIERGLIRDWDAMEDLLRYVVYTGLGWEEGNEGNILFTDPLCTPKAIREQLVQLMFETFNVSGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAP 152          
The following BLAST results are available for this feature:
BLAST of CX294917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 456
Match NameE-valueIdentityDescription
ACL6A_MOUSE1.242e-2334.10Actin-like protein 6A OS=Mus musculus GN=Actl6a PE... [more]
ACT1_PSEMZ8.900e-22100.00Actin-1 (Fragment) OS=Pseudotsuga menziesii PE=1 S... [more]
ACTL8_HUMAN1.518e-2136.36Actin-like protein 8 OS=Homo sapiens GN=ACTL8 PE=2... [more]
ARP5_SCHPO3.739e-2033.54Actin-like protein arp5 OS=Schizosaccharomyces pom... [more]
ARP4A_ARATH7.052e-1936.03Actin-related protein 4A OS=Arabidopsis thaliana G... [more]
ARP4_YARLI7.797e-1830.77Actin-related protein 4 OS=Yarrowia lipolytica GN=... [more]
ARP4_SCHPO1.330e-1733.12Actin-related protein 4 OS=Schizosaccharomyces pom... [more]
ARP42_SCHPO8.620e-1729.27SWI/SNF and RSC complexes subunit arp42 OS=Schizos... [more]
CT134_MOUSE1.470e-1638.54Putative uncharacterized actin family protein C20o... [more]
ARP7_ARATH1.470e-1637.65Actin-related protein 7 OS=Arabidopsis thaliana GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05057E04SK PhIFruit1 Citrus clementina cDNA clone C05057E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294917 ID=CX294917; Name=CX294917; organism=Citrus clementina; type=EST; length=638bp
CTCGTGCCGAATTCGGCACGAGGTTTTTAATCTCTCGGCAGTACCAAATA
CAGAGCGATAGAGAGAATCGACACTCTCAGCTAGACTCCATCTTCGAATT
TTTCTCTCGTCGTCTCTTCAATCTAACTTTTATAAAAAATGGCCGATGCT
GAGGATATTCAACCCCTTGTTTGTGACAATGGAACTGGAATGGTGAAGGC
TGGATTTGCTGGAGATGATGCTCCAAGGGCAGTATTCCCTAGTATTGTTG
GTAGGCCTCGACACACTGGAGTCATGGTTGGAATGGGGCAGAAGGATGCC
TATGTTGGTGATGAGGCCCAATCGAAAAGAGGTATTCTTACTTTGAAATA
CCCAATTGAGCACGGTATTGTAAGCAACTGGGATGATATGGAAAAGATCT
GGCATCATACCTTCTACAACGAGCTTCGTGTTGCTCCTGAAGAGCACCCA
GTGCTTCTCACTGAGGCACCTCTTAACCCCAAGGCCAACAGAGAGAAGAT
GACCCANATTATGTTTGAAACTTTCAATGTGCCAGCCATGTACGTTGCCA
TCCAGGCTGTTCTATCTCTTTATGCCAGTGGTCGTACAACTGGTATTGTG
CTGGATTCTGGTGATGGTGTGTCTCATACTGTACCATT
back to top