CX294917

Overview
NameCX294917
Unique NameCX294917
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length638
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ARP4_ASHGO (Actin-related protein 4 OS=Ashbya gossypii GN=ARP4 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.682e-12
Identity = 47/164 (28.66%), Postives = 78/164 (47.56%), Query Frame = 1
Query:  151 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS-KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEH-PVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            ++I  +V D G+     G++G D P+A+ PS  G+          G+KD    +++    R    +   +++G V +W+  EK W     +ELR       P LLTE   N + NR+K   ++ E+ +  A Y+   A    +A GR T +V+D G  V+   P
Sbjct:   12 DEITAVVIDPGSFTTNIGYSGTDCPQAILPSCYGKYTE-------GEKDELFSEQSIGLPRKDYEIHNIVQNGEVVDWEKAEKQWDWAIRSELRFETNSGMPALLTEPIWNSEENRKKSLEVLLESMDFSACYLVPTATAVSFAMGRPTCLVVDIGHDVTSVCP 168          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ARP5_YEAST (Actin-related protein 5 OS=Saccharomyces cerevisiae GN=ARP5 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.197e-12
Identity = 46/165 (27.88%), Postives = 85/165 (51.52%), Query Frame = 1
Query:  163 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTL-KYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEE---HPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLY---ASGRTTGIVLDSGDGVSHTVP 636
            P+  D G+  ++AGF     P  +FP+ + + R       + +   +VG++    + + +  + P +   V+NW+  E+I  +TF++ L V P+    +P+LLTE     ++ R     I+FET+NVP +   I ++ S Y    SG  TG+V+  G   ++ +P
Sbjct:   39 PIAIDFGSSKLRAGFVNHATPTHIFPNALTKFRDRK----LNKNFTFVGNDTLLDQAVRSQSRSPFDGPFVTNWNLTEEILDYTFHH-LGVVPDNGIPNPILLTERLATVQSQRTNWYQILFETYNVPGVTFGIDSLFSFYNYNPSGNKTGLVISCGHEDTNVIP 198          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ARP4_YEAST (Actin-related protein 4 OS=Saccharomyces cerevisiae GN=ARP4 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.870e-12
Identity = 45/163 (27.61%), Postives = 73/163 (44.79%), Query Frame = 1
Query:  151 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEH-PVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            +++  +V D G+     G++G D P+++ PS+ G+          G K  +        R    LK  IE+G+V +WD  ++ W     NEL +      P LLTE   N   NR+K   ++ E     A Y+A  +    +A+GR   +V+D G       P
Sbjct:   12 DEVSAVVIDPGSYTTNIGYSGSDFPQSILPSVYGK-----YTADEGNKKIFSEQSIGIPRKDYELKPIIENGLVIDWDTAQEQWQWALQNELYLNSNSGIPALLTEPVWNSTENRKKSLEVLLEGMQFEACYLAPTSTCVSFAAGRPNCLVVDIGHDTCSVSP 169          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ARP5_AEDAE (Actin-related protein 5 OS=Aedes aegypti GN=Arp5 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.895e-12
Identity = 44/165 (26.67%), Postives = 84/165 (50.91%), Query Frame = 1
Query:  166 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQ---KDAYVGDEAQSKRGI-LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPE---EHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYAS-GRTTGIVLDSGDGVSHTVP 636
            +V DNG+   +AG+AG D P  VF +++ +PR         +       +G++  +   +   L+   +  +V++    E+I+ + F   L +  +    HPVLLTE   NP  +R  M+ +MFE + +P +  A+  +LS   + G+ +G+++  G   +H +P
Sbjct:   30 IVIDNGSYHCRAGWAGKDVPSLVFKNVLAKPRKDRSKKDTSEVVVPTVQIGNDITNIEAVRFQLRTQFDRNVVTHLHVQEQIFDYLF-GRLGINADGCVPHPVLLTECVANPNYSRMLMSELMFECYGIPGIVYAVDGLLSYRMNGGQDSGLIVSCGYQATHVIP 193          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ARP5_CHICK (Actin-related protein 5 OS=Gallus gallus GN=ACTR5 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.090e-11
Identity = 52/171 (30.41%), Postives = 86/171 (50.29%), Query Frame = 1
Query:  163 PLVCDNGTGMVKAGFAGDDA-----PRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGIL-TLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPE---EHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGR----TTGIVLDSGDGVSHTVP 636
            PLV DNG+   +AG+A  D      P   F S+  R R  G   G G  +  VG++  S   +   L+ P +  +    +  E ++ H F   L VA +   +HP++LTEA  NP  +R+ M+ ++FE + VP +   + ++ S Y + R     +G+V+ SG   +H +P
Sbjct:   33 PLVIDNGSFQTRAGWAAADPSVPAEPLLRFRSLAARSR--GARGGAGA-ETQVGNDLGSPEPLRWLLRSPFDRNVPVQLELQELLFDHVF-QRLGVASQGCVDHPIVLTEAVCNPLYSRQMMSELLFECYQVPKVSYGVDSLYSFYHNRRQNWPCSGLVISSGYQCTHILP 199          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ARP6_CRYNE (Actin-like protein ARP6 OS=Cryptococcus neoformans GN=ARP6 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.231e-11
Identity = 52/168 (30.95%), Postives = 75/168 (44.64%), Query Frame = 1
Query:  166 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKY--PIEHGIVSNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVL----SLYASGR----TTGIVLDSGDGVSHTVP 636
            L+ DNG   +KAG +G D    V P+ + R R         +K  YVGDE  + + +  + Y  P E G++ NWD    IW   F  + L + P E  +L+TE   N     E    ++FE F   + +    A L     LY S +       IV+D G   +H VP
Sbjct:    7 LIIDNGAYEIKAGISGVDWEPRVLPNSIARSR--------TEKRVYVGDEIDNCKDLSGIVYRRPFEKGMLVNWDAERIIWDRLFSPSVLNINPTETSLLVTEPYFNLPNIAETYDQMIFEEFEFQSYFRCAPAALIPYGGLYESDQGIPPQCTIVIDMGYSYTHVVP 166          
The following BLAST results are available for this feature:
BLAST of CX294917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 456
Match NameE-valueIdentityDescription
ARP4_ASHGO1.682e-1228.66Actin-related protein 4 OS=Ashbya gossypii GN=ARP4... [more]
ARP5_YEAST2.197e-1227.88Actin-related protein 5 OS=Saccharomyces cerevisia... [more]
ARP4_YEAST2.870e-1227.61Actin-related protein 4 OS=Saccharomyces cerevisia... [more]
ARP5_AEDAE4.895e-1226.67Actin-related protein 5 OS=Aedes aegypti GN=Arp5 P... [more]
ARP5_CHICK1.090e-1130.41Actin-related protein 5 OS=Gallus gallus GN=ACTR5 ... [more]
ARP6_CRYNE9.231e-1130.95Actin-like protein ARP6 OS=Cryptococcus neoformans... [more]

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Properties
Property NameValue
Genbank descriptionC05057E04SK PhIFruit1 Citrus clementina cDNA clone C05057E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294917 ID=CX294917; Name=CX294917; organism=Citrus clementina; type=EST; length=638bp
CTCGTGCCGAATTCGGCACGAGGTTTTTAATCTCTCGGCAGTACCAAATA
CAGAGCGATAGAGAGAATCGACACTCTCAGCTAGACTCCATCTTCGAATT
TTTCTCTCGTCGTCTCTTCAATCTAACTTTTATAAAAAATGGCCGATGCT
GAGGATATTCAACCCCTTGTTTGTGACAATGGAACTGGAATGGTGAAGGC
TGGATTTGCTGGAGATGATGCTCCAAGGGCAGTATTCCCTAGTATTGTTG
GTAGGCCTCGACACACTGGAGTCATGGTTGGAATGGGGCAGAAGGATGCC
TATGTTGGTGATGAGGCCCAATCGAAAAGAGGTATTCTTACTTTGAAATA
CCCAATTGAGCACGGTATTGTAAGCAACTGGGATGATATGGAAAAGATCT
GGCATCATACCTTCTACAACGAGCTTCGTGTTGCTCCTGAAGAGCACCCA
GTGCTTCTCACTGAGGCACCTCTTAACCCCAAGGCCAACAGAGAGAAGAT
GACCCANATTATGTTTGAAACTTTCAATGTGCCAGCCATGTACGTTGCCA
TCCAGGCTGTTCTATCTCTTTATGCCAGTGGTCGTACAACTGGTATTGTG
CTGGATTCTGGTGATGGTGTGTCTCATACTGTACCATT
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