CX294917

Overview
NameCX294917
Unique NameCX294917
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length638
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ACT1_PODCA (Actin-1/2 OS=Podocoryne carnea GN=ACTIA PE=2 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 1.262e-84
Identity = 153/166 (92.17%), Postives = 158/166 (95.18%), Query Frame = 1
Query:  139 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            MAD +D+  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT IMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP
Sbjct:    1 MAD-DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 165          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ACTS_ATRMM (Actin, alpha skeletal muscle OS=Atractaspis microlepidota microlepidota GN=ACTA1 PE=2 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 1.648e-84
Identity = 148/166 (89.16%), Postives = 156/166 (93.98%), Query Frame = 1
Query:  139 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            M D ++   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMT IMFETFNVPAMYVAIQAVL LYASGRTTGIVLDSGDGV+H VP
Sbjct:    1 MCDEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLPLYASGRTTGIVLDSGDGVTHNVP 166          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ACTSB_TAKRU (Actin, alpha skeletal muscle B OS=Takifugu rubripes GN=acta1b PE=2 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 1.648e-84
Identity = 148/166 (89.16%), Postives = 157/166 (94.58%), Query Frame = 1
Query:  139 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            M D ++   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGI++NWDDMEKIWHH+FYNELRVAPEEHP LLTEAPLNPKANREKMT IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VP
Sbjct:    1 MCDDDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVP 166          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ACTC_BIOTE (Actin, cytoplasmic OS=Biomphalaria tenagophila PE=3 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 1.648e-84
Identity = 150/162 (92.59%), Postives = 155/162 (95.68%), Query Frame = 1
Query:  151 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            ED+  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT IMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+HTVP
Sbjct:    4 EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVP 165          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ACTC_BIOPF (Actin, cytoplasmic OS=Biomphalaria pfeifferi PE=3 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 1.648e-84
Identity = 150/162 (92.59%), Postives = 155/162 (95.68%), Query Frame = 1
Query:  151 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            ED+  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT IMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+HTVP
Sbjct:    4 EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVP 165          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ACTC_BIOOB (Actin, cytoplasmic OS=Biomphalaria obstructa PE=3 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 1.648e-84
Identity = 150/162 (92.59%), Postives = 155/162 (95.68%), Query Frame = 1
Query:  151 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            ED+  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT IMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+HTVP
Sbjct:    4 EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVP 165          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ACTF_STRPU (Actin, cytoskeletal 3B OS=Strongylocentrotus purpuratus GN=CYIIIB PE=2 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 2.152e-84
Identity = 150/162 (92.59%), Postives = 155/162 (95.68%), Query Frame = 1
Query:  151 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            +D+  LV DNG+GMVKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT IMFETFN PAMYVAIQAVLSLYASGRTTGIV DSGDGVSHTVP
Sbjct:    4 DDVAALVVDNGSGMVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVFDSGDGVSHTVP 165          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ACTE_STRPU (Actin, cytoskeletal 3A OS=Strongylocentrotus purpuratus GN=CYIIIA PE=3 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 2.152e-84
Identity = 150/162 (92.59%), Postives = 155/162 (95.68%), Query Frame = 1
Query:  151 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            +D+  LV DNG+GMVKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT IMFETFN PAMYVAIQAVLSLYASGRTTGIV DSGDGVSHTVP
Sbjct:    4 DDVAALVVDNGSGMVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVFDSGDGVSHTVP 165          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ACTD_STRPU (Actin, cytoskeletal 2B OS=Strongylocentrotus purpuratus GN=CYIIB PE=2 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 2.152e-84
Identity = 150/162 (92.59%), Postives = 155/162 (95.68%), Query Frame = 1
Query:  151 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            +D+  LV DNG+GMVKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT IMFETFN PAMYVAIQAVLSLYASGRTTGIV DSGDGVSHTVP
Sbjct:    4 DDVAALVIDNGSGMVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVFDSGDGVSHTVP 165          
BLAST of CX294917 vs. ExPASy Swiss-Prot
Match: ACTC_STRPU (Actin, cytoskeletal 2A OS=Strongylocentrotus purpuratus GN=CYIIA PE=2 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 2.152e-84
Identity = 150/162 (92.59%), Postives = 155/162 (95.68%), Query Frame = 1
Query:  151 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 636
            +D+  LV DNG+GMVKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT IMFETFN PAMYVAIQAVLSLYASGRTTGIV DSGDGVSHTVP
Sbjct:    4 DDVAALVVDNGSGMVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVFDSGDGVSHTVP 165          
The following BLAST results are available for this feature:
BLAST of CX294917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 456
Match NameE-valueIdentityDescription
ACT1_PODCA1.262e-8492.17Actin-1/2 OS=Podocoryne carnea GN=ACTIA PE=2 SV=1[more]
ACTS_ATRMM1.648e-8489.16Actin, alpha skeletal muscle OS=Atractaspis microl... [more]
ACTSB_TAKRU1.648e-8489.16Actin, alpha skeletal muscle B OS=Takifugu rubripe... [more]
ACTC_BIOTE1.648e-8492.59Actin, cytoplasmic OS=Biomphalaria tenagophila PE=... [more]
ACTC_BIOPF1.648e-8492.59Actin, cytoplasmic OS=Biomphalaria pfeifferi PE=3 ... [more]
ACTC_BIOOB1.648e-8492.59Actin, cytoplasmic OS=Biomphalaria obstructa PE=3 ... [more]
ACTF_STRPU2.152e-8492.59Actin, cytoskeletal 3B OS=Strongylocentrotus purpu... [more]
ACTE_STRPU2.152e-8492.59Actin, cytoskeletal 3A OS=Strongylocentrotus purpu... [more]
ACTD_STRPU2.152e-8492.59Actin, cytoskeletal 2B OS=Strongylocentrotus purpu... [more]
ACTC_STRPU2.152e-8492.59Actin, cytoskeletal 2A OS=Strongylocentrotus purpu... [more]

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Properties
Property NameValue
Genbank descriptionC05057E04SK PhIFruit1 Citrus clementina cDNA clone C05057E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294917 ID=CX294917; Name=CX294917; organism=Citrus clementina; type=EST; length=638bp
CTCGTGCCGAATTCGGCACGAGGTTTTTAATCTCTCGGCAGTACCAAATA
CAGAGCGATAGAGAGAATCGACACTCTCAGCTAGACTCCATCTTCGAATT
TTTCTCTCGTCGTCTCTTCAATCTAACTTTTATAAAAAATGGCCGATGCT
GAGGATATTCAACCCCTTGTTTGTGACAATGGAACTGGAATGGTGAAGGC
TGGATTTGCTGGAGATGATGCTCCAAGGGCAGTATTCCCTAGTATTGTTG
GTAGGCCTCGACACACTGGAGTCATGGTTGGAATGGGGCAGAAGGATGCC
TATGTTGGTGATGAGGCCCAATCGAAAAGAGGTATTCTTACTTTGAAATA
CCCAATTGAGCACGGTATTGTAAGCAACTGGGATGATATGGAAAAGATCT
GGCATCATACCTTCTACAACGAGCTTCGTGTTGCTCCTGAAGAGCACCCA
GTGCTTCTCACTGAGGCACCTCTTAACCCCAAGGCCAACAGAGAGAAGAT
GACCCANATTATGTTTGAAACTTTCAATGTGCCAGCCATGTACGTTGCCA
TCCAGGCTGTTCTATCTCTTTATGCCAGTGGTCGTACAACTGGTATTGTG
CTGGATTCTGGTGATGGTGTGTCTCATACTGTACCATT
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