CX294920

Overview
NameCX294920
Unique NameCX294920
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length659
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig596 contig Ccv1_Contig596:1..659. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294920 vs. ExPASy Swiss-Prot
Match: RL3_ARCFU (50S ribosomal protein L3P OS=Archaeoglobus fulgidus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.241e-15
Identity = 56/189 (29.63%), Postives = 90/189 (47.62%), Query Frame = 2
Query:   77 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAE 643
            K+  PR GSL F PRKRA     +++A+P+ D     R+  F GYKAGMTH+V   ++  S  + +E    VT+IET          Y KT  G++    VW+ +L + + RR                       + +  ++     ++  AS VRV+ +TQ   + G+ +K   +ME ++ GG + E
Sbjct:    2 KYHRPRRGSLAFSPRKRAKSIVPRIRAWPECDR---VRMQGFAGYKAGMTHVVMIDDRKNSPTYGEEVVVPVTVIETPPMKVAAVRVYKKTQYGMQIAAEVWSNNLDDFLDRRL-------------------NLPKKEPDVEKLKAAVENGASEVRVVTYTQPYLITGVPKKVPDVMEHRI-GGNVEE 167          
BLAST of CX294920 vs. ExPASy Swiss-Prot
Match: RL3_HALMA (50S ribosomal protein L3P OS=Haloarcula marismortui GN=rpl3p PE=1 SV=5)

HSP 1 Score: 82.0333 bits (201), Expect = 2.927e-15
Identity = 54/189 (28.57%), Postives = 83/189 (43.92%), Query Frame = 2
Query:   89 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV--VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKV 649
            PR GSLGF PRKR+     +  ++P DD     +   F GYKAGMTH+V   ++P S     E    VT+IET          Y  TP G R L  VW      E+ R                       D    + + Q+    +   +  +R++ HT    +  + +KK  +ME +V GG++++++
Sbjct:    7 PRKGSLGFGPRKRSTSETPRFNSWPSDDGQPGVQ--GFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTL-----------------DVPEDHDPDAAEEQIRDAHEAGDLGDLRLITHTVPDAVPSVPKKKPDVMETRVGGGSVSDRL 176          
BLAST of CX294920 vs. ExPASy Swiss-Prot
Match: RL3_METTP (50S ribosomal protein L3P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.521e-15
Identity = 51/187 (27.27%), Postives = 91/187 (48.66%), Query Frame = 2
Query:   89 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKV 649
            PR GSL F PRKRA     +++++  D+ +    +  F GYKAGMTH++   ++P S     E    VT++E           Y     G+R    +WA++LS+++ R                   +       + I+++++++ +    +RVLAHT  R + G+ +K   +MEI V G ++ E++
Sbjct:    7 PRRGSLAFSPRKRAKSEVPRIRSWVADERAG---MAGFAGYKAGMTHVIMIDDRPRSLTEGMEISVPVTVVEVPPMSVAALRVYEPYNGGIRPAGELWAENLSQDLERAI--------------TIPKARRGASLEDIESRVDELCE----IRVLAHTNPRLLTGVPKKVPDIMEIPVTGRSVEEQL 172          
BLAST of CX294920 vs. ExPASy Swiss-Prot
Match: RL3_THEGJ (50S ribosomal protein L3P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.236e-14
Identity = 64/195 (32.82%), Postives = 87/195 (44.62%), Query Frame = 2
Query:   77 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFY---KNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV--VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEK 646
            K   PR GSL F PRKRA     ++K +PKD      R+  F GYKAGMTHI+   + PG     KE    VTI+E           Y +   GL +   VW   L++ V+RR     KN+                 +E  K+   QLE +     +  VR+L HTQ   +K   +KK  +ME  + G  +  K
Sbjct:    3 KVHRPRRGSLAFSPRKRARSVVPRIKKWPKD---SEVRMLGFAGYKAGMTHILMIDDSPG-LTKGKEIFVPVTIVEVPPLFVYGIRAYKQGYLGLETATEVWFHELNDNVKRRIKTLPKNY----------------GEEDFKAKLGQLEDLVNDGEIVDVRLLVHTQPWLIK--LKKKPEVMEYAIGGDDVKAK 175          
BLAST of CX294920 vs. ExPASy Swiss-Prot
Match: RL3_PYRIL (50S ribosomal protein L3P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.210e-14
Identity = 59/189 (31.22%), Postives = 86/189 (45.50%), Query Frame = 2
Query:   77 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRG--LRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV---VRVLAHTQIRKMKGLKQKKAHLMEIQVNG 628
            K   PR GS+G  PRKRAA    +V+ +P+ +  KP  L  F  YKAGM H V   ++P S L+ KE  +AVT+++           Y   P     RS+  VWA  L   +RR                      T   K  +  Q++K++++  V   VR L  TQ   + G+ +K   L+EI + G
Sbjct:    8 KINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPT-LLGFAAYKAGMLHAVVVEDRPTSPLYGKEVVKAVTVLDAPPLFIWGFRLYTLDPTNGYKRSIAEVWAPELPAYLRRVL--------------------TLPEKVDVDKQMKKVEEFKDVAVDVRALVATQ-PHLSGIGKKTPELLEIPIGG 174          
BLAST of CX294920 vs. ExPASy Swiss-Prot
Match: RL3_SULAC (50S ribosomal protein L3P OS=Sulfolobus acidocaldarius GN=rpl3p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.416e-14
Identity = 61/197 (30.96%), Postives = 90/197 (45.69%), Query Frame = 2
Query:   65 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRG-LRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQL-EKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKV 649
            M HRK   PR GS G  PRKRA       K +P  +  +P +L  F+GYKAGMTH+    +KP S  + KE    VTI+E+          Y    +G L  L   WA    EE   ++ K                 + D  K   +  L +K     + +R+L  TQ   +  L +K+  ++EIQ+ GG+I +++
Sbjct:    1 MGHRKLSSPRRGSAGLRPRKRADEILPTPKNWPLVNLKEP-KLLGFIGYKAGMTHVYMIDDKPTSPNYGKEVYTPVTIVESPPILGLALRAYHIDSKGELSVLVDYWANF--EEGSLKYLKR-----------KITSLKVDSSKMKEKLDLIQKNLNNITYMRLLVSTQPWLVPSLGKKRPEIVEIQIGGGSIQDQL 183          
BLAST of CX294920 vs. ExPASy Swiss-Prot
Match: RL3_METPE (50S ribosomal protein L3P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.416e-14
Identity = 56/187 (29.95%), Postives = 83/187 (44.39%), Query Frame = 2
Query:   89 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKV 649
            PR GSL + PRKRA     K  ++P  D  +P  L +F GYK GMTH++   +   S    K+    VTIIE           Y     G R+L  VW + LS  + RR                  +Y  + G K++   +       + +  L +TQ   + G+ +K   LME+ + GGT+ +KV
Sbjct:    7 PRRGSLAYSPRKRAKSQVPKYHSWPARD-GEPI-LQSFAGYKVGMTHVIMVDDHKNSPTEGKDIMVPVTIIEIPPMKVAAIRAYTADTYGKRALTEVWTEQLSTLLGRRI-------------TLPKKYSEEAGFKALSEAV--AAGTVTELHALMYTQPDTLTGVPKKVPELMEVCIGGGTLEQKV 176          
BLAST of CX294920 vs. ExPASy Swiss-Prot
Match: RL3_THENV (50S ribosomal protein L3P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.230e-13
Identity = 58/189 (30.69%), Postives = 84/189 (44.44%), Query Frame = 2
Query:   77 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRG--LRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV---VRVLAHTQIRKMKGLKQKKAHLMEIQVNG 628
            K   PR GS+G  PRKRAA    +V+ +P+ +  KP  L  F  YKAGM H V   ++P S L+ KE    VT+++           Y   P     RS+  VWA  L   +RR                      T   K  +  Q++K++++  V   VR L  TQ   + G+ +K   L+EI + G
Sbjct:    4 KINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPA-LLGFAAYKAGMLHAVVVEDRPTSPLYGKEVVRPVTVLDAPPLFIWGFRLYTLDPTNGYRRSIAEVWAPELPAYIRRVL--------------------TLPEKADVDKQMKKVEEFKDVAVDVRALVATQ-PHLSGIGKKTPELLEIPIGG 170          
BLAST of CX294920 vs. ExPASy Swiss-Prot
Match: RL3_PYRAR (50S ribosomal protein L3P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.230e-13
Identity = 59/189 (31.22%), Postives = 85/189 (44.97%), Query Frame = 2
Query:   77 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRG--LRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV---VRVLAHTQIRKMKGLKQKKAHLMEIQVNG 628
            K   PR GS+G  PRKRAA    +V+ +P  +  KP  L  F  YKAGM H V   ++P S L+ KE  +AVT+++           Y   P    LRS   VWA  L + + R                      T   K  +  Q++++++Y  V   VR L  TQ   + G+ +K   L+EI + G
Sbjct:    4 KINRPRRGSMGVYPRKRAADIVPRVRTWPDVNLGKPA-LLGFAAYKAGMLHAVVVDDRPTSPLYGKEVVKAVTVLDAPPLFVWGFRLYTLDPTNGYLRSAAEVWAGELPKHLSRVL--------------------TLPEKVDVDKQMKQVEEYRDVAVEVRALVATQ-PHLSGIGKKTPELLEIPIGG 170          
BLAST of CX294920 vs. ExPASy Swiss-Prot
Match: RL3_METST (50S ribosomal protein L3P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.098e-13
Identity = 56/193 (29.02%), Postives = 93/193 (48.19%), Query Frame = 2
Query:   77 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWA-QHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGK-KSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKV 649
            +   PR GS+ F PRKR AR   +V  +P+ D +    L AF GYK GMTH+     + GS     E    VTI+E           Y KT  GL++L  V A  +L +E+ R+                  +++  E K + ++ +++ I +    +RVL HT+  K+  + +KK  ++E  + G ++ +K+
Sbjct:    3 RHHQPRKGSVAFSPRKRVARETPRVSTWPELDEAG---LLAFAGYKVGMTHVTALDSRKGSPTENMELSVPVTILEAPPLVVLGIRAYTKTTYGLKTLTDVIANDNLDDELSRKI--------------SVPKFDDIEAKIEELRNKIDDIDE----IRVLIHTK-PKLTSVPKKKPEVLEFGLGGKSVEDKL 173          
The following BLAST results are available for this feature:
BLAST of CX294920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
RL3_ARCFU2.241e-1529.6350S ribosomal protein L3P OS=Archaeoglobus fulgidu... [more]
RL3_HALMA2.927e-1528.5750S ribosomal protein L3P OS=Haloarcula marismortu... [more]
RL3_METTP6.521e-1527.2750S ribosomal protein L3P OS=Methanosaeta thermoph... [more]
RL3_THEGJ3.236e-1432.8250S ribosomal protein L3P OS=Thermococcus gammatol... [more]
RL3_PYRIL7.210e-1431.2250S ribosomal protein L3P OS=Pyrobaculum islandicu... [more]
RL3_SULAC9.416e-1430.9650S ribosomal protein L3P OS=Sulfolobus acidocalda... [more]
RL3_METPE9.416e-1429.9550S ribosomal protein L3P OS=Methanosphaerula palu... [more]
RL3_THENV1.230e-1330.6950S ribosomal protein L3P OS=Thermoproteus neutrop... [more]
RL3_PYRAR1.230e-1331.2250S ribosomal protein L3P OS=Pyrobaculum arsenatic... [more]
RL3_METST2.098e-1329.0250S ribosomal protein L3P OS=Methanosphaera stadtm... [more]

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Properties
Property NameValue
Genbank descriptionC05057E08SK PhIFruit1 Citrus clementina cDNA clone C05057E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294920 ID=CX294920; Name=CX294920; organism=Citrus clementina; type=EST; length=659bp
CTCGTGCCGAATTCGGCACGAGGAGCACAACGAGTCAGTCGCCGCAGCAG
CTCAGAGGAGGAGAATGTCTCACAGGAAGTTTGAGCACCCAAGGCATGGT
TCCCTTGGATTTCTTCCAAGGAAGCGAGCTGCTCGTCACAGAGGAAAGGT
GAAGGCTTTTCCCAAGGATGACCCAAGCAAGCCTTGCAGGCTCACTGCCT
TTTTGGGTTACAAGGCTGGGATGACCCACATTGTTAGGGATGTCGAGAAA
CCTGGATCTAAGCTTCACAAGAAGGAGACCTGTGAGGCTGTTACCATTAT
TGAAACCCCTCCAATGATGGTGGTTGGAGTTGTGGGATATGTGAAGACAC
CTCGTGGTCTTCGCTCTTTGAACACTGTATGGGCTCAGCATCTTAGTGAG
GAGGTGAGAAGAAGGTTCTACAAGAACTGGTGCAAATCCAAGAAGAAGGC
TTTCACAAAATACTCAAAGCAGTATGAAACAGATGAAGGGAAGAAAAGTA
TCCAAGCTCAGCTGGAGAAGATCAAGAAGTATGCATCTGTTGTTCGTGTT
CTTGCTCACACTCAGATTAGGAAAATGAAGGGTTTGAAGCAGAAGAAGGC
ACACCTGATGGAAATCCAGGTCAATGGTGGCACCATTGCTGAAAAAGTGA
CTATGCATA
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