CX294920
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX294920 vs. ExPASy Swiss-Prot
Match: RL3_ARCFU (50S ribosomal protein L3P OS=Archaeoglobus fulgidus GN=rpl3p PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.241e-15 Identity = 56/189 (29.63%), Postives = 90/189 (47.62%), Query Frame = 2 Query: 77 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAE 643 K+ PR GSL F PRKRA +++A+P+ D R+ F GYKAGMTH+V ++ S + +E VT+IET Y KT G++ VW+ +L + + RR + + ++ ++ AS VRV+ +TQ + G+ +K +ME ++ GG + E Sbjct: 2 KYHRPRRGSLAFSPRKRAKSIVPRIRAWPECDR---VRMQGFAGYKAGMTHVVMIDDRKNSPTYGEEVVVPVTVIETPPMKVAAVRVYKKTQYGMQIAAEVWSNNLDDFLDRRL-------------------NLPKKEPDVEKLKAAVENGASEVRVVTYTQPYLITGVPKKVPDVMEHRI-GGNVEE 167
BLAST of CX294920 vs. ExPASy Swiss-Prot
Match: RL3_HALMA (50S ribosomal protein L3P OS=Haloarcula marismortui GN=rpl3p PE=1 SV=5) HSP 1 Score: 82.0333 bits (201), Expect = 2.927e-15 Identity = 54/189 (28.57%), Postives = 83/189 (43.92%), Query Frame = 2 Query: 89 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV--VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKV 649 PR GSLGF PRKR+ + ++P DD + F GYKAGMTH+V ++P S E VT+IET Y TP G R L VW E+ R D + + Q+ + + +R++ HT + + +KK +ME +V GG++++++ Sbjct: 7 PRKGSLGFGPRKRSTSETPRFNSWPSDDGQPGVQ--GFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTL-----------------DVPEDHDPDAAEEQIRDAHEAGDLGDLRLITHTVPDAVPSVPKKKPDVMETRVGGGSVSDRL 176
BLAST of CX294920 vs. ExPASy Swiss-Prot
Match: RL3_METTP (50S ribosomal protein L3P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl3p PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 6.521e-15 Identity = 51/187 (27.27%), Postives = 91/187 (48.66%), Query Frame = 2 Query: 89 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKV 649 PR GSL F PRKRA +++++ D+ + + F GYKAGMTH++ ++P S E VT++E Y G+R +WA++LS+++ R + + I+++++++ + +RVLAHT R + G+ +K +MEI V G ++ E++ Sbjct: 7 PRRGSLAFSPRKRAKSEVPRIRSWVADERAG---MAGFAGYKAGMTHVIMIDDRPRSLTEGMEISVPVTVVEVPPMSVAALRVYEPYNGGIRPAGELWAENLSQDLERAI--------------TIPKARRGASLEDIESRVDELCE----IRVLAHTNPRLLTGVPKKVPDIMEIPVTGRSVEEQL 172
BLAST of CX294920 vs. ExPASy Swiss-Prot
Match: RL3_THEGJ (50S ribosomal protein L3P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl3p PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.236e-14 Identity = 64/195 (32.82%), Postives = 87/195 (44.62%), Query Frame = 2 Query: 77 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFY---KNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV--VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEK 646 K PR GSL F PRKRA ++K +PKD R+ F GYKAGMTHI+ + PG KE VTI+E Y + GL + VW L++ V+RR KN+ +E K+ QLE + + VR+L HTQ +K +KK +ME + G + K Sbjct: 3 KVHRPRRGSLAFSPRKRARSVVPRIKKWPKD---SEVRMLGFAGYKAGMTHILMIDDSPG-LTKGKEIFVPVTIVEVPPLFVYGIRAYKQGYLGLETATEVWFHELNDNVKRRIKTLPKNY----------------GEEDFKAKLGQLEDLVNDGEIVDVRLLVHTQPWLIK--LKKKPEVMEYAIGGDDVKAK 175
BLAST of CX294920 vs. ExPASy Swiss-Prot
Match: RL3_PYRIL (50S ribosomal protein L3P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl3p PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 7.210e-14 Identity = 59/189 (31.22%), Postives = 86/189 (45.50%), Query Frame = 2 Query: 77 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRG--LRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV---VRVLAHTQIRKMKGLKQKKAHLMEIQVNG 628 K PR GS+G PRKRAA +V+ +P+ + KP L F YKAGM H V ++P S L+ KE +AVT+++ Y P RS+ VWA L +RR T K + Q++K++++ V VR L TQ + G+ +K L+EI + G Sbjct: 8 KINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPT-LLGFAAYKAGMLHAVVVEDRPTSPLYGKEVVKAVTVLDAPPLFIWGFRLYTLDPTNGYKRSIAEVWAPELPAYLRRVL--------------------TLPEKVDVDKQMKKVEEFKDVAVDVRALVATQ-PHLSGIGKKTPELLEIPIGG 174
BLAST of CX294920 vs. ExPASy Swiss-Prot
Match: RL3_SULAC (50S ribosomal protein L3P OS=Sulfolobus acidocaldarius GN=rpl3p PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 9.416e-14 Identity = 61/197 (30.96%), Postives = 90/197 (45.69%), Query Frame = 2 Query: 65 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRG-LRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQL-EKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKV 649 M HRK PR GS G PRKRA K +P + +P +L F+GYKAGMTH+ +KP S + KE VTI+E+ Y +G L L WA EE ++ K + D K + L +K + +R+L TQ + L +K+ ++EIQ+ GG+I +++ Sbjct: 1 MGHRKLSSPRRGSAGLRPRKRADEILPTPKNWPLVNLKEP-KLLGFIGYKAGMTHVYMIDDKPTSPNYGKEVYTPVTIVESPPILGLALRAYHIDSKGELSVLVDYWANF--EEGSLKYLKR-----------KITSLKVDSSKMKEKLDLIQKNLNNITYMRLLVSTQPWLVPSLGKKRPEIVEIQIGGGSIQDQL 183
BLAST of CX294920 vs. ExPASy Swiss-Prot
Match: RL3_METPE (50S ribosomal protein L3P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl3p PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 9.416e-14 Identity = 56/187 (29.95%), Postives = 83/187 (44.39%), Query Frame = 2 Query: 89 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKV 649 PR GSL + PRKRA K ++P D +P L +F GYK GMTH++ + S K+ VTIIE Y G R+L VW + LS + RR +Y + G K++ + + + L +TQ + G+ +K LME+ + GGT+ +KV Sbjct: 7 PRRGSLAYSPRKRAKSQVPKYHSWPARD-GEPI-LQSFAGYKVGMTHVIMVDDHKNSPTEGKDIMVPVTIIEIPPMKVAAIRAYTADTYGKRALTEVWTEQLSTLLGRRI-------------TLPKKYSEEAGFKALSEAV--AAGTVTELHALMYTQPDTLTGVPKKVPELMEVCIGGGTLEQKV 176
BLAST of CX294920 vs. ExPASy Swiss-Prot
Match: RL3_THENV (50S ribosomal protein L3P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl3p PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.230e-13 Identity = 58/189 (30.69%), Postives = 84/189 (44.44%), Query Frame = 2 Query: 77 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRG--LRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV---VRVLAHTQIRKMKGLKQKKAHLMEIQVNG 628 K PR GS+G PRKRAA +V+ +P+ + KP L F YKAGM H V ++P S L+ KE VT+++ Y P RS+ VWA L +RR T K + Q++K++++ V VR L TQ + G+ +K L+EI + G Sbjct: 4 KINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPA-LLGFAAYKAGMLHAVVVEDRPTSPLYGKEVVRPVTVLDAPPLFIWGFRLYTLDPTNGYRRSIAEVWAPELPAYIRRVL--------------------TLPEKADVDKQMKKVEEFKDVAVDVRALVATQ-PHLSGIGKKTPELLEIPIGG 170
BLAST of CX294920 vs. ExPASy Swiss-Prot
Match: RL3_PYRAR (50S ribosomal protein L3P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl3p PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.230e-13 Identity = 59/189 (31.22%), Postives = 85/189 (44.97%), Query Frame = 2 Query: 77 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRG--LRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV---VRVLAHTQIRKMKGLKQKKAHLMEIQVNG 628 K PR GS+G PRKRAA +V+ +P + KP L F YKAGM H V ++P S L+ KE +AVT+++ Y P LRS VWA L + + R T K + Q++++++Y V VR L TQ + G+ +K L+EI + G Sbjct: 4 KINRPRRGSMGVYPRKRAADIVPRVRTWPDVNLGKPA-LLGFAAYKAGMLHAVVVDDRPTSPLYGKEVVKAVTVLDAPPLFVWGFRLYTLDPTNGYLRSAAEVWAGELPKHLSRVL--------------------TLPEKVDVDKQMKQVEEYRDVAVEVRALVATQ-PHLSGIGKKTPELLEIPIGG 170
BLAST of CX294920 vs. ExPASy Swiss-Prot
Match: RL3_METST (50S ribosomal protein L3P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl3p PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.098e-13 Identity = 56/193 (29.02%), Postives = 93/193 (48.19%), Query Frame = 2 Query: 77 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWA-QHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGK-KSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKV 649 + PR GS+ F PRKR AR +V +P+ D + L AF GYK GMTH+ + GS E VTI+E Y KT GL++L V A +L +E+ R+ +++ E K + ++ +++ I + +RVL HT+ K+ + +KK ++E + G ++ +K+ Sbjct: 3 RHHQPRKGSVAFSPRKRVARETPRVSTWPELDEAG---LLAFAGYKVGMTHVTALDSRKGSPTENMELSVPVTILEAPPLVVLGIRAYTKTTYGLKTLTDVIANDNLDDELSRKI--------------SVPKFDDIEAKIEELRNKIDDIDE----IRVLIHTK-PKLTSVPKKKPEVLEFGLGGKSVEDKL 173 The following BLAST results are available for this feature:
BLAST of CX294920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
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Sequences
The
following sequences are available for this feature:
EST sequence >CX294920 ID=CX294920; Name=CX294920; organism=Citrus clementina; type=EST; length=659bpback to top |