CX294924

Overview
NameCX294924
Unique NameCX294924
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length624
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12558 contig Ccv1_Contig12558:156..779. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294924 vs. ExPASy Swiss-Prot
Match: KCAB2_BOVIN (Voltage-gated potassium channel subunit beta-2 OS=Bos taurus GN=KCNAB2 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.220e-13
Identity = 59/209 (28.23%), Postives = 102/209 (48.80%), Query Frame = 3
Query:   30 LGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALK--GGMRERVELATKFGISYADGKREI-RG-DPAYARAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVH------PITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYS 623
            LG  GL VS  GLG       +G    +     L+  A ++GI L DT+++Y     E++LG  +K  G  R  + + TK    +  GK E  RG    +     +ASL+RL ++ +D+ + +R D   P+E T+  +  ++ +G   Y G S  S+  I  A++V       P    Q E+ ++ R+ VE ++     ++G+G + +S
Sbjct:   42 LGKSGLRVSCLGLGTW---VTFGGQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKI---FWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWS 244          
BLAST of CX294924 vs. ExPASy Swiss-Prot
Match: KCAB2_RAT (Voltage-gated potassium channel subunit beta-2 OS=Rattus norvegicus GN=Kcnab2 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.206e-13
Identity = 59/209 (28.23%), Postives = 102/209 (48.80%), Query Frame = 3
Query:   30 LGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALK--GGMRERVELATKFGISYADGKREI-RG-DPAYARAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVH------PITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYS 623
            LG  GL VS  GLG       +G    +     L+  A ++GI L DT+++Y     E++LG  +K  G  R  + + TK    +  GK E  RG    +     +ASL+RL ++ +D+ + +R D   P+E T+  +  ++ +G   Y G S  S+  I  A++V       P    Q E+ ++ R+ VE ++     ++G+G + +S
Sbjct:   42 LGKSGLRVSCLGLGTW---VTFGGQITDEMAEHLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKI---FWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWS 244          
BLAST of CX294924 vs. ExPASy Swiss-Prot
Match: KCAB2_MOUSE (Voltage-gated potassium channel subunit beta-2 OS=Mus musculus GN=Kcnab2 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.206e-13
Identity = 59/209 (28.23%), Postives = 102/209 (48.80%), Query Frame = 3
Query:   30 LGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALK--GGMRERVELATKFGISYADGKREI-RG-DPAYARAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVH------PITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYS 623
            LG  GL VS  GLG       +G    +     L+  A ++GI L DT+++Y     E++LG  +K  G  R  + + TK    +  GK E  RG    +     +ASL+RL ++ +D+ + +R D   P+E T+  +  ++ +G   Y G S  S+  I  A++V       P    Q E+ ++ R+ VE ++     ++G+G + +S
Sbjct:   42 LGKSGLRVSCLGLGTW---VTFGGQITDEMAEHLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKI---FWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWS 244          
BLAST of CX294924 vs. ExPASy Swiss-Prot
Match: AAD4_YEAST (Probable aryl-alcohol dehydrogenase AAD4 OS=Saccharomyces cerevisiae GN=AAD4 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.370e-13
Identity = 49/173 (28.32%), Postives = 86/173 (49.71%), Query Frame = 3
Query:  150 SGITLLDTSDIYGPHTNEILLGKALKGG-MRERVELATKFGISYADGKREIRGDPAY---------ARAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRA------HAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAY 620
            +G   +DT++ Y    +EI +G+ +K   +R+++ +ATKF   Y   K E+ G  +             +   SL++L  D ID+ Y H  D    IE  +  L  LV++GK+ Y+G+S+  A  +  A      H   P +  Q +W++ +RD E +I+P  R  G+ +  +
Sbjct:   19 AGGNCIDTANSYQNEESEIWIGEWMKSRKLRDQIVIATKFTGDYK--KYEVGGGKSANYCGNHKHSLHVSVRDSLRKLQTDWIDILYVHWWDYMSSIEEVMDSLHILVQQGKVLYLGVSDTPAWVVSAANYYATSHGKTPFSIYQGKWNVLNRDFERDIIPMARHFGMALAPW 189          
BLAST of CX294924 vs. ExPASy Swiss-Prot
Match: AAD14_YEAST (Putative aryl-alcohol dehydrogenase AAD14 OS=Saccharomyces cerevisiae GN=AAD14 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.224e-12
Identity = 59/220 (26.82%), Postives = 101/220 (45.91%), Query Frame = 3
Query:   21 RIKLGSQGLEVSAQGLGCMGM----SAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGG-MRERVELATKFGISYADGKREIRGDPAY---------ARAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRA------HAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAY 620
            R+   + G+ VS   LG   +    S F G    E     L+     +G   +DT++ Y    +EI +G+ +    +R+++ +ATKF   Y   K E+ G  +             +   SL++L  D ID+ Y H  D    IE  +  L  LV++GK+ Y+G+S+  A  +  A      H   P +  Q +W++ +RD E +I+P  R  G+ +  +
Sbjct:   19 RVLSKTAGIRVSPLILGGASIGDAWSGFMGSMNKEQ-AFELLDAFYEAGGNCIDTANSYQNEESEIWIGEWMASRKLRDQIVIATKFTGDYK--KYEVGGGKSANYCGNHKRSLHVSVRDSLRKLQTDWIDILYIHWWDYMSSIEEVMDSLHILVQQGKVLYLGVSDTPAWVVSAANYYATSHGKTPFSVYQGKWNVLNRDFERDIIPMARHFGMALAPW 235          
BLAST of CX294924 vs. ExPASy Swiss-Prot
Match: TAS_SHIFL (Protein tas OS=Shigella flexneri GN=tas PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.726e-12
Identity = 68/234 (29.06%), Postives = 105/234 (44.87%), Query Frame = 3
Query:   27 KLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIY----GPHT---NEILLGKAL-KGGMRERVELATKFGISYADGKREIRGDPAY----ARAACEASLKRLDIDCIDLYYQH---------------RIDTRVPIEV--TIGELKKLVEEGKIKYIGLSEASASTIRR------AHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYS 623
            ++    LEVS  GLG M     +G    E+D  A + +A+  GI L+D +++Y     P T    E  +G  L K G RE++ +A+K      +  + IR D A      R A   SLKRL  D +DLY  H                 D+   + +  T+  L +    GKI+YIG+S  +A  + R       H +  I  +Q  +SL +R  E  +    +  G+ ++AYS
Sbjct:    5 RIPHSSLEVSTLGLGTMT----FGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYS 234          
BLAST of CX294924 vs. ExPASy Swiss-Prot
Match: TAS_ECOLI (Protein tas OS=Escherichia coli (strain K12) GN=tas PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.726e-12
Identity = 68/234 (29.06%), Postives = 105/234 (44.87%), Query Frame = 3
Query:   27 KLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIY----GPHT---NEILLGKAL-KGGMRERVELATKFGISYADGKREIRGDPAY----ARAACEASLKRLDIDCIDLYYQH---------------RIDTRVPIEV--TIGELKKLVEEGKIKYIGLSEASASTIRR------AHAVHPITAVQLEWSLWSRDVEAEIVPTCRELGIGIVAYS 623
            ++    LEVS  GLG M     +G    E+D  A + +A+  GI L+D +++Y     P T    E  +G  L K G RE++ +A+K      +  + IR D A      R A   SLKRL  D +DLY  H                 D+   + +  T+  L +    GKI+YIG+S  +A  + R       H +  I  +Q  +SL +R  E  +    +  G+ ++AYS
Sbjct:    5 RIPHSSLEVSTLGLGTMT----FGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYS 234          
BLAST of CX294924 vs. ExPASy Swiss-Prot
Match: YEZB_SCHPO (Uncharacterized oxidoreductase C3A11.11c OS=Schizosaccharomyces pombe GN=SPAC3A11.11c PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.650e-12
Identity = 54/185 (29.19%), Postives = 92/185 (49.73%), Query Frame = 3
Query:  102 PKPESDMIALIHHAINSGITLLDTSDIYG---PHTNEILLGKALKG--GMRERVELATKFGISYADGKREIRGDPAYARAACEASLKRL-----DIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEAE-IVPTCRELGIGIVAYS 623
            P P+ +   ++++A++ G +  D  + YG   P  N  LL +  +      ++V L+ K   ++      + G     R     S+K +      +  IDLY    ID   PIE T+  LK+ V+ G I+ IGL E S   I+RAH+V  I A+++ +S+  R++E   +   C +L I +VA+S
Sbjct:   25 PVPDEEAFRIMNYALSHGCSFWDAGEFYGLSEPLANLQLLSRYFQKFPDSIDKVFLSVKG--AFDPETHRVHG----TRECITKSIKTVRETLKKVKTIDLYQCAAIDPDTPIEETMACLKEFVDSGDIRCIGLCEPSVEEIKRAHSVVRIAAIEVHYSMLFREIEYNGVKKLCHDLSIPLVAHS 203          
BLAST of CX294924 vs. ExPASy Swiss-Prot
Match: KCAB_SCHPO (Putative voltage-gated potassium channel subunit beta OS=Schizosaccharomyces pombe GN=SPCC965.06 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.932e-12
Identity = 61/209 (29.19%), Postives = 96/209 (45.93%), Query Frame = 3
Query:   30 LGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIALIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISYADGKREIRGDPAYARAACE---ASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAH-------AVHPITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYS 623
            LG  GL+VSA  LG  G   +             +  A + GI   DT++IY    +E ++GKA+K    +R E      + +  G +         +   E   ASLKRL +  +D+   HR D  VP+E  +    +L+++GK  Y G SE SA  I  AH        + P+ A Q +++  +RD  E +++P  +  G G   +S
Sbjct:   18 LGRSGLKVSAFSLG--GWLTYGNEGYDVEHTKNCLKQAWDLGINTFDTAEIYSNGNSETVMGKAIKELGWDRSEYVITTKVFFGAGTKLPNTTGLSRKHIIEGLNASLKRLGLPYVDVIMAHRPDPSVPMEEVVRAFTQLIQDGKAFYWGTSEWSAFEIEHAHHIATKYNLIAPV-ADQPQYNYLTRDHFEKDLLPLQQIYGYGATVWS 223          
BLAST of CX294924 vs. ExPASy Swiss-Prot
Match: KCAB3_XENLA (Voltage-gated potassium channel subunit beta-3 OS=Xenopus laevis GN=kcnab3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.932e-12
Identity = 58/213 (27.23%), Postives = 95/213 (44.60%), Query Frame = 3
Query:   15 VKRIKLGSQGLEVSAQGLGCMGMSAFYGPPKPESDMIA--LIHHAINSGITLLDTSDIYGPHTNEILLGKALKGGMRERVELATKFGISYADGKREIRG-DPAYARAACEASLKRLDIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVH------PITAVQLEWSLWSRD-VEAEIVPTCRELGIGIVAYS 623
            +K   LG  GL VS     C+G+  +       SD +A  L+  A   G+ L DT+++Y     E  LGK LK     R        I +       RG    +       SL+RL +D +D+ + +R+D   P+E  +  +  ++ +G   Y G S  SA  I  A++V       P    Q E+ L+ R+ VE ++     ++G+G + +S
Sbjct:   71 MKYRNLGKSGLRVS-----CLGLGTWVTFGSQISDEVAENLMTVAYEHGVNLFDTAEVYAAGRAERTLGKILKKKEWRRSSYVVTTKIYWGGQAETERGLSRKHIIEGLRGSLERLQLDYVDIVFANRMDPNSPMEEIVRAMTFVINQGMAMYWGTSRWSAMEIMEAYSVARQFNLIPPVCEQAEYHLFQREKVETQLPELYHKIGVGSMTWS 278          
The following BLAST results are available for this feature:
BLAST of CX294924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
KCAB2_BOVIN3.220e-1328.23Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_RAT4.206e-1328.23Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_MOUSE4.206e-1328.23Voltage-gated potassium channel subunit beta-2 OS=... [more]
AAD4_YEAST9.370e-1328.32Probable aryl-alcohol dehydrogenase AAD4 OS=Saccha... [more]
AAD14_YEAST1.224e-1226.82Putative aryl-alcohol dehydrogenase AAD14 OS=Sacch... [more]
TAS_SHIFL2.726e-1229.06Protein tas OS=Shigella flexneri GN=tas PE=3 SV=1[more]
TAS_ECOLI2.726e-1229.06Protein tas OS=Escherichia coli (strain K12) GN=ta... [more]
YEZB_SCHPO4.650e-1229.19Uncharacterized oxidoreductase C3A11.11c OS=Schizo... [more]
KCAB_SCHPO7.932e-1229.19Putative voltage-gated potassium channel subunit b... [more]
KCAB3_XENLA7.932e-1227.23Voltage-gated potassium channel subunit beta-3 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC05057F02SK PhIFruit1 Citrus clementina cDNA clone C05057F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294924 ID=CX294924; Name=CX294924; organism=Citrus clementina; type=EST; length=624bp
AAATGGCGGGGGCAGTGAAGAGAATCAAGCTTGGTTCACAAGGTCTAGAG
GTTTCAGCACAAGGCTTAGGATGCATGGGCATGTCCGCCTTCTACGGGCC
CCCGAAGCCAGAATCCGACATGATCGCCTTGATCCACCATGCCATTAACA
GTGGCATCACTCTACTTGACACCTCCGATATTTACGGGCCCCACACCAAT
GAAATCCTTCTGGGAAAGGCTTTGAAGGGAGGAATGAGGGAAAGAGTTGA
ATTGGCTACTAAATTTGGTATCAGCTATGCGGATGGTAAAAGGGAAATTC
GCGGTGACCCGGCTTATGCGAGAGCTGCATGTGAGGCCAGCTTGAAGCGT
CTGGATATTGATTGTATTGATCTTTATTACCAACATCGCATTGATACACG
AGTTCCCATTGAAGTCACGATTGGAGAACTCAAGAAACTAGTTGAAGAGG
GTAAGATAAAGTATATAGGTCTGTCCGAGGCTTCTGCCTCAACAATTAGA
CGAGCTCATGCTGTCCATCCAATAACAGCTGTGCAGTTGGAATGGTCCTT
GTGGTCACGAGATGTGGAGGCAGAGATTGTTCCTACTTGCAGGGAACTTG
GCATTGGAATTGTTGCATACAGTC
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