CX294926

Overview
NameCX294926
Unique NameCX294926
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length613
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5939 contig Ccv1_Contig5939:678..1290. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX294926 vs. ExPASy Swiss-Prot
Match: LAC4_THACU (Laccase-4 OS=Thanatephorus cucumeris GN=LCC4 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.493e-11
Identity = 59/212 (27.83%), Postives = 92/212 (43.40%), Query Frame = 1 
Query:    4 VPNSARGILINGRGS--------GAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPARDYYI----VVSSRFTSTVLTTT---GILHYSNSAGPVSGPIPGGPTVQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLINTTKTIRLSSSAGQVNGKQRYAINSVSFIPADTPLSL 594
            VP+S    LING+G          +  NV++GK YRLR+ N     S  F I+ H++ ++E +G         S  ++ GQ YSV+V A+Q A +Y+I     V+   T+  L  T    +LHY        G     PT +   ++  A  +  NL A      P GS          ++ L+     V+G  R+  N++ +     P  L
Sbjct:  194 VPDSG---LINGKGRYVGGPAVPRSVINVKRGKRYRLRVINASAIGSFTFSIEGHRLTVIEADGIPHQPLPVDSFQIYAGQRYSVIVEANQTAANYWIRAPMTVAGAGTNANLDPTNVFAVLHY-------EGAPNAEPTTEQGSAIGTA-LVEENLHALINPGAPGGS-----APADVSLNLAIGRSTVDGILRFTFNNIKYEAPSLPTLL 389
The following BLAST results are available for this feature:
BLAST of CX294926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
LAC4_THACU8.493e-1127.83Laccase-4 OS=Thanatephorus cucumeris GN=LCC4 PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionC05057F05SK PhIFruit1 Citrus clementina cDNA clone C05057F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294926 ID=CX294926; Name=CX294926; organism=Citrus clementina; type=EST; length=613bp
CTCGTGCCGAATTCGGCACGAGGAATTCTTATCAATGGCCGGGGGAGCGG
TGCTGCTTTTAATGTTGAACAAGGAAAAACTTACAGGCTCAGAATATCAA
ATGTTGGATTGCAAAACTCACTCAATTTCCGCATTCAAAACCATAAGATG
AAGTTGGTAGAAGTTGAGGGAACACATACCCTCCAGACTACCTACTCATC
ACTTGATGTTCATGTCGGACAATCATACTCCGTTTTGGTTACTGCTGATC
AACCTGCACGGGACTATTACATTGTTGTTTCCTCTCGCTTCACCTCCACT
GTCCTCACCACCACCGGCATTCTTCATTACAGTAACTCTGCAGGTCCAGT
TTCAGGCCCCATCCCAGGTGGACCAACTGTCCAAATTGACTGGTCACTAA
ACCAAGCACGCTCTATCAGGTCTAATCTCACAGCAAGTGGACCAAGGCCT
AACCCACAGGGTTCATACCACTATGGTCTCATAAACACTACCAAAACTAT
CAGGCTTTCAAGTTCTGCTGGGCAAGTTAATGGCAAGCAGAGATATGCAA
TCAACAGCGTGTCCTTTATTCCAGCTGACACTCCCCTAAGCTTGCTGACT
ACTTCAGATTGGA
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