CX294932

Overview
NameCX294932
Unique NameCX294932
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length565
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSMA_METM5 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=psmA PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.983e-41
Identity = 81/151 (53.64%), Postives = 113/151 (74.83%), Query Frame = 3
Query:  108 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSG 560
            YDR +  FSPEGRL+QVEYA EA++ G+TA+G+K K+GVVLAV++RITS L++ SS+EKI +ID+HI  A SGL+ADAR L++ AR+E Q +R SYGE +TVE+  + +CD+   +    +   +RPFG++LLI G D +   L+ TDPSG
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAY---TQHGGARPFGLALLITGIDRHSARLFETDPSG 157          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSMA_METBF (Proteasome subunit alpha OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=psmA PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.983e-41
Identity = 85/151 (56.29%), Postives = 111/151 (73.51%), Query Frame = 3
Query:  108 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSG 560
            YDR +  FSP+GRLFQVEYA EA+K G+TA+G+K  +GVVL V+KRITS L+E  S+EKI +ID+HIG A SGL+ADAR+LV+ ARVE Q +R SY EP+ VE  ++ +CD    +    +    RP+G +LLIAG D+N P L+ TDPSG
Sbjct:    9 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDEPIGVEVISKKICDHKQTY---TQYGGVRPYGTALLIAGVDDNLPRLFETDPSG 156          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSMA_METTH (Proteasome subunit alpha OS=Methanobacterium thermoautotrophicum GN=psmA PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 3.897e-41
Identity = 81/151 (53.64%), Postives = 110/151 (72.85%), Query Frame = 3
Query:  108 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSG 560
            YDR +  FSP+GRLFQVEYA EA+K G+T++G+K+KEG+VL V+KR TS L+EP S+EKI +IDEHIG A SGL+ADAR ++E AR+E Q +R +Y EP+ VES  + +CD+   +    +    RPFG +L+I G +  G  L+ TDPSG
Sbjct:    9 YDRAITVFSPDGRLFQVEYAREAVKRGTTSLGVKSKEGIVLVVDKRPTSKLVEPKSIEKIFQIDEHIGAATSGLVADARAIIEKARLEAQINRITYNEPIRVESLAKKICDMKQMY---TQHGGVRPFGTALIIGGVNGRGCRLFETDPSG 156          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSMA_ARCFU (Proteasome subunit alpha OS=Archaeoglobus fulgidus GN=psmA PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 3.897e-41
Identity = 87/158 (55.06%), Postives = 112/158 (70.89%), Query Frame = 3
Query:   87 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSG 560
            M L +  YDR +  FSP+GRLFQVEYA EA+K G+TAIG+K KEGV+L  +KR+ S LLE  ++EKI +IDEHI  A SGL+ADAR L++ AR+E Q +R +Y EP+TV+   + +CD   ++    +    RPFGVSLLIAG DE  P LY TDPSG
Sbjct:    1 MHLPQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQY---TQYGGVRPFGVSLLIAGVDE-VPKLYETDPSG 154          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSMA_METM6 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=psmA PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.134e-40
Identity = 80/151 (52.98%), Postives = 112/151 (74.17%), Query Frame = 3
Query:  108 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSG 560
            YDR +  FSPEGRL+QVEYA EA++ G+TA+G+K  +GVVLAV++RITS L++ SS+EKI +ID+HI  A SGL+ADAR L++ AR+E Q +R SYGE +TVE+  + +CD+   +    +   +RPFG++LLI G D +   L+ TDPSG
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCNDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAY---TQHGGARPFGLALLITGIDRHSARLFETDPSG 157          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSMA_THEON (Proteasome subunit alpha OS=Thermococcus onnurineus (strain NA1) GN=psmA PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.934e-40
Identity = 86/151 (56.95%), Postives = 109/151 (72.19%), Query Frame = 3
Query:  108 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSG 560
            YDR +  FSP+GRLFQV YA EA+K G+TA+G+K KEGVVLAVEKRITS L+EPSS EKI +ID+HI  A SG+IADAR LV+ AR+E Q +R +YGEP+ +    + +CDL        +    RPFG +LL+AG ++  P LY TDPSG
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKEGVVLAVEKRITSKLIEPSSYEKIFQIDDHIAAAPSGIIADARVLVDRARLEAQVYRLTYGEPVPLTVLVKKICDLKQAH---TQYGGVRPFGAALLMAGVNDK-PELYETDPSG 156          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSMA_METMJ (Proteasome subunit alpha OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=psmA PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.934e-40
Identity = 84/152 (55.26%), Postives = 109/152 (71.71%), Query Frame = 3
Query:  108 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGT 563
            YDR +  FSP+GRL+QVEYA EA+K G+TA+G+K  EGVVL V+KR+TS LLEP S+EKI +ID HIG A SGL+ DAR+LV+ ARVE+Q +R SY EP+ VE   + LCD    +    +   +RP+G +LLIAG  +    L+ TDPSGT
Sbjct:    9 YDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKCSEGVVLIVDKRVTSRLLEPVSIEKIFKIDAHIGVASSGLVGDARSLVDRARVESQINRVSYNEPINVEILAKKLCDHMQTY---TQFGGARPYGTALLIAGVSDGEARLFETDPSGT 157          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSMA_METMA (Proteasome subunit alpha OS=Methanosarcina mazei GN=psmA PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.526e-40
Identity = 84/151 (55.63%), Postives = 110/151 (72.85%), Query Frame = 3
Query:  108 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSG 560
            YDR +  FSP+GRLFQVEYA EA+K G+TA+G+K  +GVVL V+KRITS L+E  S+EKI +ID+HIG A SGL+ADAR+LV+ ARVE Q +R SY E + VE  ++ +CD    +    +    RP+G +LLIAG D+N P L+ TDPSG
Sbjct:    9 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTY---TQYGGVRPYGTALLIAGVDDNKPRLFETDPSG 156          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSMA_METJA (Proteasome subunit alpha OS=Methanocaldococcus jannaschii GN=psmA PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.299e-40
Identity = 80/151 (52.98%), Postives = 111/151 (73.51%), Query Frame = 3
Query:  108 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSG 560
            YDR +  FSPEGRL+QVEYA EA++ G+TAIG+  K+GVVLAV++RITS L++  S+EKI +ID+H+  A SGL+ADAR L++ AR+E Q +R +YGE +++E   + +CD+   +    +    RPFGVSLLIAG D+N   L+ TDPSG
Sbjct:    9 YDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAY---TQHGGVRPFGVSLLIAGIDKNEARLFETDPSG 156          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSMA_PYRHO (Proteasome subunit alpha OS=Pyrococcus horikoshii GN=psmA PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 4.308e-40
Identity = 86/151 (56.95%), Postives = 105/151 (69.54%), Query Frame = 3
Query:  108 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSG 560
            YDR +  FSP+GRLFQV YA EA+K G+TA+G+K  EGVVLAVEKRITS L+EP S EKI +ID+HI  A SG+IADAR LV  AR+E Q HR +YGEP  +    + +CDL        +    RPFG +LL+AG +E  P LY TDPSG
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCNEGVVLAVEKRITSRLIEPESYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMH---TQYGGVRPFGAALLMAGVNEK-PELYETDPSG 156          
The following BLAST results are available for this feature:
BLAST of CX294932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
PSMA_METM52.983e-4153.64Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METBF2.983e-4156.29Proteasome subunit alpha OS=Methanosarcina barkeri... [more]
PSMA_METTH3.897e-4153.64Proteasome subunit alpha OS=Methanobacterium therm... [more]
PSMA_ARCFU3.897e-4155.06Proteasome subunit alpha OS=Archaeoglobus fulgidus... [more]
PSMA_METM61.134e-4052.98Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_THEON1.934e-4056.95Proteasome subunit alpha OS=Thermococcus onnurineu... [more]
PSMA_METMJ1.934e-4055.26Proteasome subunit alpha OS=Methanoculleus marisni... [more]
PSMA_METMA2.526e-4055.63Proteasome subunit alpha OS=Methanosarcina mazei G... [more]
PSMA_METJA3.299e-4052.98Proteasome subunit alpha OS=Methanocaldococcus jan... [more]
PSMA_PYRHO4.308e-4056.95Proteasome subunit alpha OS=Pyrococcus horikoshii ... [more]

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Properties
Property NameValue
Genbank descriptionC05057F12SK PhIFruit1 Citrus clementina cDNA clone C05057F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294932 ID=CX294932; Name=CX294932; organism=Citrus clementina; type=EST; length=565bp
CTCGTGCCGAATTCGGCACGAGGCTCTAACACAGTTCCGGTATCAACTCT
TAAGCTCAGGTTTCCAGATCCAATCAGCAACAAAACATGTTCCTTACAAG
GACTGAGTATGATAGAGGAGTGAACACTTTCTCTCCAGAAGGAAGATTGT
TTCAGGTCGAATATGCTATTGAGGCCATTAAGCTGGGTTCAACTGCAATT
GGGTTGAAGACGAAAGAAGGGGTTGTGCTTGCTGTCGAGAAACGCATTAC
TTCACCACTGCTGGAGCCCAGCAGCGTGGAGAAGATTATGGAAATTGATG
AGCATATAGGATGTGCTATGAGTGGATTGATTGCTGATGCTCGTACACTT
GTTGAACATGCAAGGGTTGAAACTCAGAATCATAGATTCTCATATGGTGA
GCCAATGACCGTAGAATCTACTACACAAGCACTCTGTGACCTGGCGCTAC
GCTTTGGTGAAGGCGATGAAGAATCCATGTCTCGACCATTTGGAGTATCC
CTTCTTATTGCTGGATCTGACGAGAATGGACCTAGCCTGTACTATACAGA
TCCATCTGGCACATT
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