CX294932

Overview
NameCX294932
Unique NameCX294932
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length565
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSMA_HALWD (Proteasome subunit alpha OS=Haloquadratum walsbyi (strain DSM 16790) GN=psmA PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.061e-38
Identity = 76/152 (50.00%), Postives = 111/152 (73.03%), Query Frame = 3
Query:  108 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGT 563
            YDRG+  FSP+GRL+QVEYA EA+K G+ ++G++T +G+VLA +KR  SPL+EP+SVEKI + D+H+G A +G +ADAR L++ AR + Q +R  YGEP+ +E+ T+ + D   ++    +   +RPFGV+LLI G ++  P LY TDPSGT
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASVGIRTPDGIVLAADKRSRSPLMEPTSVEKIHKTDDHVGIASAGHVADARQLIDFARRQAQVNRLRYGEPVGIETLTKNVTDNIQQY---TQVGGARPFGVALLIGGIEDGSPRLYETDPSGT 158          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSMA_METB6 (Proteasome subunit alpha OS=Methanoregula boonei (strain 6A8) GN=psmA PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.087e-38
Identity = 81/152 (53.29%), Postives = 106/152 (69.74%), Query Frame = 3
Query:  108 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGT 563
            YDR +  FSP+GRL+QVEYA EA+K G+TA+G+K  +GVVL V+KR++S LLE SS+EKI +IDEHIG A SGL+ DAR LV+ AR+E Q +R SY E + VE+  + LCD         +    RP+G +LLIAG  +    L+ TDPSGT
Sbjct:    9 YDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKAHDGVVLIVDKRVSSKLLESSSIEKIFKIDEHIGVASSGLVGDARALVDRARIECQINRVSYDERIEVEALAKKLCD---HMQTLTQYGGIRPYGTALLIAGVSDGESRLFETDPSGT 157          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSMA1_HALMA (Proteasome subunit alpha 1 OS=Haloarcula marismortui GN=psmA1 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.032e-38
Identity = 83/164 (50.61%), Postives = 114/164 (69.51%), Query Frame = 3
Query:   72 NQQQNMFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGT 563
            NQQQ        YDRG+  FSP+GRL+QVEYA EA+K G+ +IG++T +GVVLAV+KRI SPL+E SSVEKI + D+HIG A +G +ADAR L++ AR + Q ++  YGEP+ VE+ T+ + D   ++    +   +RPFGV+L+I G     P L+ TDPSGT
Sbjct:    5 NQQQ-------AYDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTSDGVVLAVDKRIRSPLMERSSVEKIHKADDHIGIASAGHVADARQLIDFARRQAQVNQLRYGEPVGVETLTKEITDYIQQY---TQVGGARPFGVALIIGGIVNGEPRLFETDPSGT 158          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSMA_NATPD (Proteasome subunit alpha OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=psmA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 5.266e-38
Identity = 78/152 (51.32%), Postives = 112/152 (73.68%), Query Frame = 3
Query:  108 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGT 563
            YDRG+  FSP+GRL+QVEYA EA+K G+ +IG++T++GVVL V+KRI SPL+E +SVEKI + D+HIG A +G +ADAR L++ AR + Q ++  Y EP+ VE+ T+A+ D   ++    +   +RPFGV+L+I G ++  P LY TDPSGT
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGIRTEDGVVLVVDKRIRSPLMERTSVEKIHKADDHIGIASAGHVADARQLIDFARRQAQVNQLRYDEPIGVETLTKAVTDHIQQY---TQVGGARPFGVALIIGGIEDGEPRLYETDPSGT 158          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSMA_HALSA (Proteasome subunit alpha OS=Halobacterium salinarium GN=psmA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.532e-37
Identity = 83/164 (50.61%), Postives = 114/164 (69.51%), Query Frame = 3
Query:   72 NQQQNMFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGT 563
            NQQQ        YDRG+  FSP+GRL+QVEYA EA+K G+ +IG++T EGVVL V+K+  SPLLE SSVEK+ +ID+H+G A +G +ADAR LV+ AR ++Q  R  Y EP+ V + T+++ D   ++    +   +RPFGV+LLIAG +   P L+ TDPSGT
Sbjct:    5 NQQQ-------AYDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTPEGVVLVVDKQTRSPLLEGSSVEKLHKIDDHVGAASAGHVADARQLVDFARQQSQVERVRYDEPIGVRTLTKSVTDHIQQY---TQVGGARPFGVALLIAGVEGGEPRLFETDPSGT 158          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSMA_HALS3 (Proteasome subunit alpha OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=psmA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.532e-37
Identity = 83/164 (50.61%), Postives = 114/164 (69.51%), Query Frame = 3
Query:   72 NQQQNMFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGT 563
            NQQQ        YDRG+  FSP+GRL+QVEYA EA+K G+ +IG++T EGVVL V+K+  SPLLE SSVEK+ +ID+H+G A +G +ADAR LV+ AR ++Q  R  Y EP+ V + T+++ D   ++    +   +RPFGV+LLIAG +   P L+ TDPSGT
Sbjct:    5 NQQQ-------AYDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTPEGVVLVVDKQTRSPLLEGSSVEKLHKIDDHVGAASAGHVADARQLVDFARQQSQVERVRYDEPIGVRTLTKSVTDHIQQY---TQVGGARPFGVALLIAGVEGGEPRLFETDPSGT 158          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSMA2_HALMA (Proteasome subunit alpha 2 OS=Haloarcula marismortui GN=psmA2 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.614e-37
Identity = 74/152 (48.68%), Postives = 110/152 (72.37%), Query Frame = 3
Query:  108 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGT 563
            YDRG+  FSP+GRL+QVEYA EA+K G+ ++G++T++GVV+A ++   SPL+E  S+EKI EID H+G A +G +ADAR L++ AR ++Q +R  Y EP +VES T+ + D   ++    +   +RPFGV+LL+AG ++  P L+ TDPSGT
Sbjct:    9 YDRGITIFSPDGRLYQVEYAREAVKRGTASVGVRTEDGVVIAADRHARSPLIERDSIEKIHEIDSHVGVASAGHVADARQLIDVARRQSQVNRLRYDEPASVESLTKEITDYIQQY---TQTGGARPFGVALLVAGIEDGEPRLFETDPSGT 157          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAE (Proteasome subunit alpha OS=Pyrobaculum aerophilum GN=psmA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 5.823e-37
Identity = 79/151 (52.32%), Postives = 105/151 (69.54%), Query Frame = 3
Query:  108 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSG 560
            YDR +  FSPEG+++QVEYA EA+K G   +G+K K GVVL  EKR  S L + SS+EKI  IDEH+  + SGL+ADAR L+++AR    +HRF Y EP+ VE  T+A+C+L  ++    +   +RPFGV+LLIAG D +G  LY TDPSG
Sbjct:    9 YDRAITIFSPEGKIYQVEYAGEAVKRGWPTVGVKCKAGVVLTAEKRKISALFDSSSLEKIYLIDEHVAASPSGLLADARILIDYARDVALSHRFIYDEPIDVEFLTKAVCNLKQQY---TQFGGARPFGVALLIAGVDRHGARLYQTDPSG 156          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSMA_SULIY (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.173e-35
Identity = 70/151 (46.36%), Postives = 104/151 (68.87%), Query Frame = 3
Query:  108 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSG 560
            YDR +  FSP+G L+QV+YA EA+K G TAIG+K+K GVV+A EKR    LL+  S+EK+  ID+H+GC+ +GL +D R L+++AR     HR  Y EP++++  T+++ D+   +    +    RPFGV+L+IAG D++ P LY T+PSG
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMY---TQHGGVRPFGVALVIAGIDKSVPKLYMTEPSG 157          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSMA_SULIN (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=psmA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.173e-35
Identity = 70/151 (46.36%), Postives = 104/151 (68.87%), Query Frame = 3
Query:  108 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSG 560
            YDR +  FSP+G L+QV+YA EA+K G TAIG+K+K GVV+A EKR    LL+  S+EK+  ID+H+GC+ +GL +D R L+++AR     HR  Y EP++++  T+++ D+   +    +    RPFGV+L+IAG D++ P LY T+PSG
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMY---TQHGGVRPFGVALVIAGIDKSVPKLYMTEPSG 157          
The following BLAST results are available for this feature:
BLAST of CX294932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
PSMA_HALWD1.061e-3850.00Proteasome subunit alpha OS=Haloquadratum walsbyi ... [more]
PSMA_METB63.087e-3853.29Proteasome subunit alpha OS=Methanoregula boonei (... [more]
PSMA1_HALMA4.032e-3850.61Proteasome subunit alpha 1 OS=Haloarcula marismort... [more]
PSMA_NATPD5.266e-3851.32Proteasome subunit alpha OS=Natronomonas pharaonis... [more]
PSMA_HALSA1.532e-3750.61Proteasome subunit alpha OS=Halobacterium salinari... [more]
PSMA_HALS31.532e-3750.61Proteasome subunit alpha OS=Halobacterium salinaru... [more]
PSMA2_HALMA2.614e-3748.68Proteasome subunit alpha 2 OS=Haloarcula marismort... [more]
PSMA_PYRAE5.823e-3752.32Proteasome subunit alpha OS=Pyrobaculum aerophilum... [more]
PSMA_SULIY4.173e-3546.36Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIN4.173e-3546.36Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]

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Properties
Property NameValue
Genbank descriptionC05057F12SK PhIFruit1 Citrus clementina cDNA clone C05057F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294932 ID=CX294932; Name=CX294932; organism=Citrus clementina; type=EST; length=565bp
CTCGTGCCGAATTCGGCACGAGGCTCTAACACAGTTCCGGTATCAACTCT
TAAGCTCAGGTTTCCAGATCCAATCAGCAACAAAACATGTTCCTTACAAG
GACTGAGTATGATAGAGGAGTGAACACTTTCTCTCCAGAAGGAAGATTGT
TTCAGGTCGAATATGCTATTGAGGCCATTAAGCTGGGTTCAACTGCAATT
GGGTTGAAGACGAAAGAAGGGGTTGTGCTTGCTGTCGAGAAACGCATTAC
TTCACCACTGCTGGAGCCCAGCAGCGTGGAGAAGATTATGGAAATTGATG
AGCATATAGGATGTGCTATGAGTGGATTGATTGCTGATGCTCGTACACTT
GTTGAACATGCAAGGGTTGAAACTCAGAATCATAGATTCTCATATGGTGA
GCCAATGACCGTAGAATCTACTACACAAGCACTCTGTGACCTGGCGCTAC
GCTTTGGTGAAGGCGATGAAGAATCCATGTCTCGACCATTTGGAGTATCC
CTTCTTATTGCTGGATCTGACGAGAATGGACCTAGCCTGTACTATACAGA
TCCATCTGGCACATT
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