CX294932

Overview
NameCX294932
Unique NameCX294932
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length565
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSMA_SULIM (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.173e-35
Identity = 70/151 (46.36%), Postives = 104/151 (68.87%), Query Frame = 3
Query:  108 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSG 560
            YDR +  FSP+G L+QV+YA EA+K G TAIG+K+K GVV+A EKR    LL+  S+EK+  ID+H+GC+ +GL +D R L+++AR     HR  Y EP++++  T+++ D+   +    +    RPFGV+L+IAG D++ P LY T+PSG
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMY---TQHGGVRPFGVALVIAGIDKSVPKLYMTEPSG 157          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSMA_SULIL (Proteasome subunit alpha OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.173e-35
Identity = 70/151 (46.36%), Postives = 104/151 (68.87%), Query Frame = 3
Query:  108 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSG 560
            YDR +  FSP+G L+QV+YA EA+K G TAIG+K+K GVV+A EKR    LL+  S+EK+  ID+H+GC+ +GL +D R L+++AR     HR  Y EP++++  T+++ D+   +    +    RPFGV+L+IAG D++ P LY T+PSG
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMY---TQHGGVRPFGVALVIAGIDKSVPKLYMTEPSG 157          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSMA_SULIK (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=psmA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.173e-35
Identity = 70/151 (46.36%), Postives = 104/151 (68.87%), Query Frame = 3
Query:  108 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSG 560
            YDR +  FSP+G L+QV+YA EA+K G TAIG+K+K GVV+A EKR    LL+  S+EK+  ID+H+GC+ +GL +D R L+++AR     HR  Y EP++++  T+++ D+   +    +    RPFGV+L+IAG D++ P LY T+PSG
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMY---TQHGGVRPFGVALVIAGIDKSVPKLYMTEPSG 157          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSMA_SULIA (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.27) GN=psmA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.173e-35
Identity = 70/151 (46.36%), Postives = 104/151 (68.87%), Query Frame = 3
Query:  108 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSG 560
            YDR +  FSP+G L+QV+YA EA+K G TAIG+K+K GVV+A EKR    LL+  S+EK+  ID+H+GC+ +GL +D R L+++AR     HR  Y EP++++  T+++ D+   +    +    RPFGV+L+IAG D++ P LY T+PSG
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMY---TQHGGVRPFGVALVIAGIDKSVPKLYMTEPSG 157          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSA7_CARAU (Proteasome subunit alpha type-7 OS=Carassius auratus GN=psma7 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 9.296e-35
Identity = 77/153 (50.33%), Postives = 103/153 (67.32%), Query Frame = 3
Query:  108 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGT 563
            YDR +  FSP+G LFQVEYA EA+K GSTA+G++ K+ VVL VEK+  + L E  +V KI  +DEH+  A +GL ADAR ++  ARVE Q+HR +  +P+TVE  T+ +  L  R+ + +     RPFG+S LI G D +G P LY TDPSGT
Sbjct:    5 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGKDIVVLGVEKKSVAKLQEERTVRKICALDEHVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIATLKQRYTQSNGR---RPFGISALIVGFDFDGTPRLYQTDPSGT 154          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSMA_SULSO (Proteasome subunit alpha OS=Sulfolobus solfataricus GN=psmA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 6.025e-34
Identity = 68/151 (45.03%), Postives = 103/151 (68.21%), Query Frame = 3
Query:  108 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSG 560
            YDR +  FSP+G L+QV+YA EA+K G TAIG+K+K  VV+A EKR    LL+  S+EK+  ID+H+GC+ +GL +D R L+++AR     HR  Y EP++++  T+++ D+   +    +    RPFGV+L+IAG D++ P L+ T+PSG
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSSVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMY---TQHGGVRPFGVALVIAGIDKSVPKLFMTEPSG 157          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSA7B_XENLA (Proteasome subunit alpha type-7-B OS=Xenopus laevis GN=psma7-B PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 6.025e-34
Identity = 76/153 (49.67%), Postives = 103/153 (67.32%), Query Frame = 3
Query:  108 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGT 563
            YDR +  FSP+G LFQVEYA EA+K GSTA+G++ KE VVL VEK+  + L +  +V KI  +DE++  A +GL ADAR ++  ARVE Q+HR +  +P+TVE  T+ +  L  R+ + +     RPFG+S LI G D +G P LY TDPSGT
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKEIVVLGVEKKSVAKLQDERTVRKICALDENVFMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGR---RPFGISALIVGFDFDGTPRLYQTDPSGT 152          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSA7A_XENLA (Proteasome subunit alpha type-7-A OS=Xenopus laevis GN=psma7-A PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 6.025e-34
Identity = 76/153 (49.67%), Postives = 103/153 (67.32%), Query Frame = 3
Query:  108 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGT 563
            YDR +  FSP+G LFQVEYA EA+K GSTA+G++ KE VVL VEK+  + L +  +V KI  +DE++  A +GL ADAR ++  ARVE Q+HR +  +P+TVE  T+ +  L  R+ + +     RPFG+S LI G D +G P LY TDPSGT
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKEIVVLGVEKKSVAKLQDERTVRKICALDENVFMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGR---RPFGISALIVGFDFDGTPRLYQTDPSGT 152          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSA4_SPIOL (Proteasome subunit alpha type-4 OS=Spinacia oleracea GN=PAC1 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 6.025e-34
Identity = 78/153 (50.98%), Postives = 103/153 (67.32%), Query Frame = 3
Query:  108 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPS-SVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSG 560
            YD     FSPEGRL+QVEYA+EAI    +AIG+  K+GVVL  EK++TS LL+ S S EK+ +ID+H+ CA++G+++DA  L+  ARV+ Q + FSY EPM VE   Q+LCD    +    +    RPFGVS L AG D+N G  LY +DPSG
Sbjct:    5 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILAKDGVVLIGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFSYQEPMPVEQLVQSLCDTKQGY---TQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSG 154          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSA7_CICAR (Proteasome subunit alpha type-7 OS=Cicer arietinum GN=PAD1 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 7.869e-34
Identity = 74/154 (48.05%), Postives = 102/154 (66.23%), Query Frame = 3
Query:  108 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD--ENGPSLYYTDPSGT 563
            YDR +  FSP+G LFQVEYA+EA++ G+ A+G++  + VVL VEK+ T+ L +  SV KI+ +D+HI  A +GL ADAR L+  ARVE Q+HR +  +P+TVE  T+ +  L  ++    +    RPFG+S LI G D     PSLY TDPSGT
Sbjct:    4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDNVVLGVEKKSTAKLQDTRSVRKIVNLDDHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKY---TQSGGVRPFGLSTLIVGFDPYTGSPSLYQTDPSGT 154          
The following BLAST results are available for this feature:
BLAST of CX294932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
PSMA_SULIM4.173e-3546.36Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIL4.173e-3546.36Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIK4.173e-3546.36Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIA4.173e-3546.36Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSA7_CARAU9.296e-3550.33Proteasome subunit alpha type-7 OS=Carassius aurat... [more]
PSMA_SULSO6.025e-3445.03Proteasome subunit alpha OS=Sulfolobus solfataricu... [more]
PSA7B_XENLA6.025e-3449.67Proteasome subunit alpha type-7-B OS=Xenopus laevi... [more]
PSA7A_XENLA6.025e-3449.67Proteasome subunit alpha type-7-A OS=Xenopus laevi... [more]
PSA4_SPIOL6.025e-3450.98Proteasome subunit alpha type-4 OS=Spinacia olerac... [more]
PSA7_CICAR7.869e-3448.05Proteasome subunit alpha type-7 OS=Cicer arietinum... [more]

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Properties
Property NameValue
Genbank descriptionC05057F12SK PhIFruit1 Citrus clementina cDNA clone C05057F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294932 ID=CX294932; Name=CX294932; organism=Citrus clementina; type=EST; length=565bp
CTCGTGCCGAATTCGGCACGAGGCTCTAACACAGTTCCGGTATCAACTCT
TAAGCTCAGGTTTCCAGATCCAATCAGCAACAAAACATGTTCCTTACAAG
GACTGAGTATGATAGAGGAGTGAACACTTTCTCTCCAGAAGGAAGATTGT
TTCAGGTCGAATATGCTATTGAGGCCATTAAGCTGGGTTCAACTGCAATT
GGGTTGAAGACGAAAGAAGGGGTTGTGCTTGCTGTCGAGAAACGCATTAC
TTCACCACTGCTGGAGCCCAGCAGCGTGGAGAAGATTATGGAAATTGATG
AGCATATAGGATGTGCTATGAGTGGATTGATTGCTGATGCTCGTACACTT
GTTGAACATGCAAGGGTTGAAACTCAGAATCATAGATTCTCATATGGTGA
GCCAATGACCGTAGAATCTACTACACAAGCACTCTGTGACCTGGCGCTAC
GCTTTGGTGAAGGCGATGAAGAATCCATGTCTCGACCATTTGGAGTATCC
CTTCTTATTGCTGGATCTGACGAGAATGGACCTAGCCTGTACTATACAGA
TCCATCTGGCACATT
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