CX294932

Overview
NameCX294932
Unique NameCX294932
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length565
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSMA_PICTO (Proteasome subunit alpha OS=Picrophilus torridus GN=psmA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.028e-33
Identity = 70/152 (46.05%), Postives = 101/152 (66.45%), Query Frame = 3
Query:  108 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGT 563
            YDR +  FSP+GRLFQVEYA EA+K GSTA+G+K K+GV L  EK++ S L+E +S+EKI  ID+ +    SGL+ADAR L++ AR+  Q  + +YG  M +E+  + + D   ++    +    RP+GVS++ AG D  GP L+  DP+GT
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVKKGSTALGIKFKDGVALISEKKVRSRLVEKTSLEKIQLIDDRVAAVTSGLVADARVLIDFARISDQQEKVTYGSLMNIENLVKRVADQMQQY---TQYGGVRPYGVSIIFAGLDSIGPRLFDCDPAGT 156          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSMA_THEVO (Proteasome subunit alpha OS=Thermoplasma volcanium GN=psmA PE=3 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.342e-33
Identity = 70/152 (46.05%), Postives = 102/152 (67.11%), Query Frame = 3
Query:  108 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGT 563
            YDR +  FSP+GRLFQVEYA EA+K GSTA+GLK   GV+L  +K+I S L+E +S+EKI  ID+++    SGL+ADAR L++ AR+  Q  + +YG  + +E+  + + D   ++    +    RP+GVSL+ AG D+ GP L+  DP+GT
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVKKGSTALGLKFSNGVLLISDKKIRSKLIEQNSLEKIQLIDDYVAAVTSGLVADARVLIDFARISAQQEKVTYGSLVNIENLVKRVADQMQQY---TQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGT 156          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSMA_THEAC (Proteasome subunit alpha OS=Thermoplasma acidophilum GN=psmA PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 2.290e-33
Identity = 69/152 (45.39%), Postives = 102/152 (67.11%), Query Frame = 3
Query:  108 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGT 563
            YDR +  FSP+GRLFQVEYA EA+K GSTA+G+K   GV+L  +K++ S L+E +S+EKI  ID+++    SGL+ADAR LV+ AR+  Q  + +YG  + +E+  + + D   ++    +    RP+GVSL+ AG D+ GP L+  DP+GT
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQY---TQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGT 156          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSA7_MOUSE (Proteasome subunit alpha type-7 OS=Mus musculus GN=Psma7 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.990e-33
Identity = 74/153 (48.37%), Postives = 103/153 (67.32%), Query Frame = 3
Query:  108 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGT 563
            YDR +  FSP+G LFQVEYA EA+K GSTA+G++ K+ VVL VEK+  + L +  +V KI  +D+++  A +GL ADAR ++  ARVE Q+HR +  +P+TVE  T+ +  L  R+ + +     RPFG+S LI G D +G P LY TDPSGT
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGR---RPFGISALIVGFDFDGTPRLYQTDPSGT 152          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSA7_CHICK (Proteasome subunit alpha type-7 OS=Gallus gallus GN=PSMA7 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.990e-33
Identity = 74/153 (48.37%), Postives = 102/153 (66.67%), Query Frame = 3
Query:  108 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGT 563
            YDR +  FSP+G LFQVEYA EA+K GSTA+G++ K+ VVL VEK+  + L +  +V KI  +D+++  A +GL ADAR ++  ARVE Q+HR +  +P+TVE  T+ +  L  R+    +    RPFG+S LI G D +G P LY TDPSGT
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRY---TQSKRRRPFGISALIVGFDFDGTPRLYQTDPSGT 152          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSA7_BOVIN (Proteasome subunit alpha type-7 OS=Bos taurus GN=PSMA7 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.990e-33
Identity = 74/153 (48.37%), Postives = 103/153 (67.32%), Query Frame = 3
Query:  108 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGT 563
            YDR +  FSP+G LFQVEYA EA+K GSTA+G++ K+ VVL VEK+  + L +  +V KI  +D+++  A +GL ADAR ++  ARVE Q+HR +  +P+TVE  T+ +  L  R+ + +     RPFG+S LI G D +G P LY TDPSGT
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGR---RPFGISALIVGFDFDGTPRLYQTDPSGT 152          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSA7L_MOUSE (Proteasome subunit alpha type-7-like OS=Mus musculus GN=Psma8 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.990e-33
Identity = 72/155 (46.45%), Postives = 103/155 (66.45%), Query Frame = 3
Query:  102 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGT 563
            + YDR +  FSP+G LFQVEYA EA+K GSTA+G++    VVL VEK+  + L +  +V KI  +D+H+  A +GL ADAR ++  ARVE Q+H+ +  +P+TVE  T+ +  L  ++ + +     RPFG+S LI G D++G P LY TDPSGT
Sbjct:    3 SRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDHVCMAFAGLTADARVVISRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGR---RPFGISALIVGFDDDGIPRLYQTDPSGT 154          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSA7L_MACFA (Proteasome subunit alpha type-7-like OS=Macaca fascicularis GN=PSMA7L PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.990e-33
Identity = 72/155 (46.45%), Postives = 103/155 (66.45%), Query Frame = 3
Query:  102 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGT 563
            + YDR +  FSP+G LFQVEYA EA+K GSTA+G++    VVL VEK+  + L +  +V KI  +D+H+  A +GL ADAR ++  ARVE Q+H+ +  +P+TVE  T+ +  L  ++ + +     RPFG+S LI G D++G P LY TDPSGT
Sbjct:    3 SRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGR---RPFGISALIVGFDDDGIPRLYQTDPSGT 154          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSMA_AERPE (Proteasome subunit alpha OS=Aeropyrum pernix GN=psmA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.101e-33
Identity = 71/155 (45.81%), Postives = 100/155 (64.52%), Query Frame = 3
Query:   99 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPS-LYYTDPSG 560
            +T YDR    FSPEG L+QV YA EA+K G T++G+KT EGVV+A EKR   PL++   ++KI +ID+HIG A +G+  D R L+++ARV T  HR  YGEP  VE   + + D+   +    +    RPFGV+L+ AG + +G + +Y TDP G
Sbjct:    9 QTAYDRAATIFSPEGDLYQVRYAFEAVKKGWTSLGIKTNEGVVIAAEKRFIGPLVDIDDIDKIYKIDDHIGVAFAGMGGDGRILIDYARVFTVRHRLLYGEPPPVELVAKVVADVKQAY---TQHGGVRPFGVALIFAGVNPDGTTKVYRTDPGG 160          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSA4_PETHY (Proteasome subunit alpha type-4 OS=Petunia hybrida GN=PAC1 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.101e-33
Identity = 76/153 (49.67%), Postives = 103/153 (67.32%), Query Frame = 3
Query:  108 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPS-SVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSG 560
            YD     FSPEGRL+QVEYA+EAI    +AIG+ +K+GVVL  EK++TS LL+ S S EK+ +ID+H+ CA++G+++DA  L+  ARV+ Q + FSY EPM VE   Q+LCD    +    +     PFGVS L AG D+N G  L+ +DPSG
Sbjct:    5 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGISSKDGVVLVGEKKVTSKLLQTSTSSEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFSYQEPMPVEQLVQSLCDTKQGY---TQYGGLPPFGVSFLFAGWDKNFGFQLFMSDPSG 154          
The following BLAST results are available for this feature:
BLAST of CX294932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
PSMA_PICTO1.028e-3346.05Proteasome subunit alpha OS=Picrophilus torridus G... [more]
PSMA_THEVO1.342e-3346.05Proteasome subunit alpha OS=Thermoplasma volcanium... [more]
PSMA_THEAC2.290e-3345.39Proteasome subunit alpha OS=Thermoplasma acidophil... [more]
PSA7_MOUSE2.990e-3348.37Proteasome subunit alpha type-7 OS=Mus musculus GN... [more]
PSA7_CHICK2.990e-3348.37Proteasome subunit alpha type-7 OS=Gallus gallus G... [more]
PSA7_BOVIN2.990e-3348.37Proteasome subunit alpha type-7 OS=Bos taurus GN=P... [more]
PSA7L_MOUSE2.990e-3346.45Proteasome subunit alpha type-7-like OS=Mus muscul... [more]
PSA7L_MACFA2.990e-3346.45Proteasome subunit alpha type-7-like OS=Macaca fas... [more]
PSMA_AERPE5.101e-3345.81Proteasome subunit alpha OS=Aeropyrum pernix GN=ps... [more]
PSA4_PETHY5.101e-3349.67Proteasome subunit alpha type-4 OS=Petunia hybrida... [more]

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Properties
Property NameValue
Genbank descriptionC05057F12SK PhIFruit1 Citrus clementina cDNA clone C05057F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294932 ID=CX294932; Name=CX294932; organism=Citrus clementina; type=EST; length=565bp
CTCGTGCCGAATTCGGCACGAGGCTCTAACACAGTTCCGGTATCAACTCT
TAAGCTCAGGTTTCCAGATCCAATCAGCAACAAAACATGTTCCTTACAAG
GACTGAGTATGATAGAGGAGTGAACACTTTCTCTCCAGAAGGAAGATTGT
TTCAGGTCGAATATGCTATTGAGGCCATTAAGCTGGGTTCAACTGCAATT
GGGTTGAAGACGAAAGAAGGGGTTGTGCTTGCTGTCGAGAAACGCATTAC
TTCACCACTGCTGGAGCCCAGCAGCGTGGAGAAGATTATGGAAATTGATG
AGCATATAGGATGTGCTATGAGTGGATTGATTGCTGATGCTCGTACACTT
GTTGAACATGCAAGGGTTGAAACTCAGAATCATAGATTCTCATATGGTGA
GCCAATGACCGTAGAATCTACTACACAAGCACTCTGTGACCTGGCGCTAC
GCTTTGGTGAAGGCGATGAAGAATCCATGTCTCGACCATTTGGAGTATCC
CTTCTTATTGCTGGATCTGACGAGAATGGACCTAGCCTGTACTATACAGA
TCCATCTGGCACATT
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