CX294932

Overview
NameCX294932
Unique NameCX294932
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length565
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSA4B_ORYSJ (Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. japonica GN=Os06g0167600 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.042e-30
Identity = 72/153 (47.06%), Postives = 99/153 (64.71%), Query Frame = 3
Query:  108 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPS-SVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSG 560
            YD     FSPEGRL+QVEYA+EAI    +A+G+   +GVVL  EK++TS LL+ S S EK+ +ID H+ CA++G+++DA  L+  AR+  Q +  SY EP+ VE   Q+LCD    +    +    RPFGVS L AG D+ +G  LY +DPSG
Sbjct:    5 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGY---TQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSG 154          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSA4B_ORYSI (Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. indica GN=OsI_021067 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.042e-30
Identity = 72/153 (47.06%), Postives = 99/153 (64.71%), Query Frame = 3
Query:  108 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPS-SVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSG 560
            YD     FSPEGRL+QVEYA+EAI    +A+G+   +GVVL  EK++TS LL+ S S EK+ +ID H+ CA++G+++DA  L+  AR+  Q +  SY EP+ VE   Q+LCD    +    +    RPFGVS L AG D+ +G  LY +DPSG
Sbjct:    5 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGY---TQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSG 154          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSA4A_ORYSJ (Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. japonica GN=PAC1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.042e-30
Identity = 72/153 (47.06%), Postives = 99/153 (64.71%), Query Frame = 3
Query:  108 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPS-SVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSG 560
            YD     FSPEGRL+QVEYA+EAI    +A+G+   +GVVL  EK++TS LL+ S S EK+ +ID H+ CA++G+++DA  L+  AR+  Q +  SY EP+ VE   Q+LCD    +    +    RPFGVS L AG D+ +G  LY +DPSG
Sbjct:    5 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGY---TQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSG 154          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSA4A_ORYSI (Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. indica GN=OsI_021120 PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 4.042e-30
Identity = 72/153 (47.06%), Postives = 99/153 (64.71%), Query Frame = 3
Query:  108 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPS-SVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSG 560
            YD     FSPEGRL+QVEYA+EAI    +A+G+   +GVVL  EK++TS LL+ S S EK+ +ID H+ CA++G+++DA  L+  AR+  Q +  SY EP+ VE   Q+LCD    +    +    RPFGVS L AG D+ +G  LY +DPSG
Sbjct:    5 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGY---TQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSG 154          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSA1B_ARATH (Proteasome subunit alpha type-1-B OS=Arabidopsis thaliana GN=PAF2 PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 5.279e-30
Identity = 73/154 (47.40%), Postives = 94/154 (61.04%), Query Frame = 3
Query:   99 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSG 560
            R +YD  V T+SP GRLFQVEYA+EA+K GS AIGL+++  VVLA   +  S L   S   KI ++D+HIG A++GL AD R L  + R E+ NH F+Y  P+ V      L D A       + S  RP+GV LL+ G DE+G  LYY  PSG
Sbjct:    3 RNQYDTDVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSEL--SSHQRKIFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKA---QVCTQRSWKRPYGVGLLVGGLDESGAHLYYNCPSG 151          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSA1A_ARATH (Proteasome subunit alpha type-1-A OS=Arabidopsis thaliana GN=PAF1 PE=1 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 5.279e-30
Identity = 73/154 (47.40%), Postives = 94/154 (61.04%), Query Frame = 3
Query:   99 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSG 560
            R +YD  V T+SP GRLFQVEYA+EA+K GS AIGL+++  VVLA   +  S L   S   KI ++D+HIG A++GL AD R L  + R E+ NH F+Y  P+ V      L D A       + S  RP+GV LL+ G DE+G  LYY  PSG
Sbjct:    3 RNQYDTDVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSEL--SSHQRKIFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKA---QVCTQRSWKRPYGVGLLVGGLDESGAHLYYNCPSG 151          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSA7_TRYBB (Proteasome subunit alpha type-7 OS=Trypanosoma brucei brucei GN=PSA4 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.894e-30
Identity = 68/153 (44.44%), Postives = 98/153 (64.05%), Query Frame = 3
Query:  108 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGT 563
            YDR +  FSP+G LFQVEYA EA++ G  A+G+K K+ ++ AVEK+    L +  +  KI ++DEHI  A +GL ADAR +V HA++E Q  R SY + + V+   + +  +  R     + S SRP+GVS +I G +ENG P L+ T+PSGT
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVRKGLCAVGVKGKDSIIFAVEKKSVQKLQDSRTTRKIYKLDEHIYLASAGLSADARVVVNHAQLECQRFRLSYEDAIDVDLLVRYVARVQQR---STQSSGSRPYGVSTIIGGFNENGQPQLWKTEPSGT 152          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSA7_DICDI (Proteasome subunit alpha type-7 OS=Dictyostelium discoideum GN=psmA7 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 9.004e-30
Identity = 64/158 (40.51%), Postives = 104/158 (65.82%), Query Frame = 3
Query:   93 LTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGT 563
            ++   YDR +  FSP+G LFQVEYA+EA++ G+ A+G++ K+ +VL VEK+ T+ L +  S+ KI+++D+HI    +GL AD+R L+  A +E Q++R +  +  +VE  ++ +  +  R+    +    RPFG+S LI G D +G P+LY TDPSG+
Sbjct:    1 MSSARYDRAITVFSPDGHLFQVEYAMEAVRKGTVAVGVRGKDVIVLGVEKKATAKLQDARSIRKIVKLDDHICLTFAGLTADSRVLISKALMECQSYRLTVEDSPSVEYISKFIAGIQQRY---TQSGGVRPFGISTLIVGFDTDGTPNLYQTDPSGS 155          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSA7_YEAST (Proteasome component PRE6 OS=Saccharomyces cerevisiae GN=PRE6 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.176e-29
Identity = 71/154 (46.10%), Postives = 101/154 (65.58%), Query Frame = 3
Query:  108 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPS-SVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD--ENGPSLYYTDPSG 560
            YDR ++ FSP+G +FQVEYA+EA+K G+ A+G+K K  VVL  E+R T  L +   +  K+ +ID H+  + SGL AD+R L+E ARVE Q+HR +  +P+TVE  T+ +  +  R+    +    RPFGVS LIAG D  ++ P LY T+PSG
Sbjct:    4 YDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRY---TQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSG 154          
BLAST of CX294932 vs. ExPASy Swiss-Prot
Match: PSA71_DROME (Proteasome subunit alpha type-7-1 OS=Drosophila melanogaster GN=Pros28.1 PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 3.421e-29
Identity = 67/154 (43.51%), Postives = 98/154 (63.64%), Query Frame = 3
Query:  102 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPS-LYYTDPSG 560
            + YDR V  FSP+G L QVEYA EA++ GSTA+G++    VVL VEK+  + L E   V KI  +D H+  A +GL ADAR ++  A+VE Q+HR +  +P+T+E  T+ +  L  ++ + +     RPFG+S LI G D +G + L+ T+PSG
Sbjct:    3 SRYDRAVTIFSPDGHLLQVEYAQEAVRKGSTAVGVRGANCVVLGVEKKSVAQLQEDRKVRKICMLDNHVVMAFAGLTADARIMINRAQVECQSHRLNVEDPVTLEYITRFIAQLKQKYTQSNGR---RPFGISCLIGGFDADGSAHLFQTEPSG 153          
The following BLAST results are available for this feature:
BLAST of CX294932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
PSA4B_ORYSJ4.042e-3047.06Proteasome subunit alpha type-4-2 OS=Oryza sativa ... [more]
PSA4B_ORYSI4.042e-3047.06Proteasome subunit alpha type-4-2 OS=Oryza sativa ... [more]
PSA4A_ORYSJ4.042e-3047.06Proteasome subunit alpha type-4-1 OS=Oryza sativa ... [more]
PSA4A_ORYSI4.042e-3047.06Proteasome subunit alpha type-4-1 OS=Oryza sativa ... [more]
PSA1B_ARATH5.279e-3047.40Proteasome subunit alpha type-1-B OS=Arabidopsis t... [more]
PSA1A_ARATH5.279e-3047.40Proteasome subunit alpha type-1-A OS=Arabidopsis t... [more]
PSA7_TRYBB6.894e-3044.44Proteasome subunit alpha type-7 OS=Trypanosoma bru... [more]
PSA7_DICDI9.004e-3040.51Proteasome subunit alpha type-7 OS=Dictyostelium d... [more]
PSA7_YEAST1.176e-2946.10Proteasome component PRE6 OS=Saccharomyces cerevis... [more]
PSA71_DROME3.421e-2943.51Proteasome subunit alpha type-7-1 OS=Drosophila me... [more]

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Properties
Property NameValue
Genbank descriptionC05057F12SK PhIFruit1 Citrus clementina cDNA clone C05057F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294932 ID=CX294932; Name=CX294932; organism=Citrus clementina; type=EST; length=565bp
CTCGTGCCGAATTCGGCACGAGGCTCTAACACAGTTCCGGTATCAACTCT
TAAGCTCAGGTTTCCAGATCCAATCAGCAACAAAACATGTTCCTTACAAG
GACTGAGTATGATAGAGGAGTGAACACTTTCTCTCCAGAAGGAAGATTGT
TTCAGGTCGAATATGCTATTGAGGCCATTAAGCTGGGTTCAACTGCAATT
GGGTTGAAGACGAAAGAAGGGGTTGTGCTTGCTGTCGAGAAACGCATTAC
TTCACCACTGCTGGAGCCCAGCAGCGTGGAGAAGATTATGGAAATTGATG
AGCATATAGGATGTGCTATGAGTGGATTGATTGCTGATGCTCGTACACTT
GTTGAACATGCAAGGGTTGAAACTCAGAATCATAGATTCTCATATGGTGA
GCCAATGACCGTAGAATCTACTACACAAGCACTCTGTGACCTGGCGCTAC
GCTTTGGTGAAGGCGATGAAGAATCCATGTCTCGACCATTTGGAGTATCC
CTTCTTATTGCTGGATCTGACGAGAATGGACCTAGCCTGTACTATACAGA
TCCATCTGGCACATT
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