CX294934

Overview
NameCX294934
Unique NameCX294934
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length553
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10260 contig Ccv1_Contig10260:885..1437. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294934 vs. ExPASy Swiss-Prot
Match: CHSB_IPOTF (Chalcone synthase B (Fragment) OS=Ipomoea trifida GN=CHSB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 7.342e-21
Identity = 47/80 (58.75%), Postives = 59/80 (73.75%), Query Frame = 2
Query:    2 KNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEE 241
            +N+E  L +AF P GISDWNSIFW+ HPGG AI++ VE           A+R VLSEYGN++SACVLFILDE+RKKS ++
Sbjct:  285 QNVEDCLVKAFEPYGISDWNSIFWVLHPGGNAIVEGVEETLGLAPEKLRASRDVLSEYGNLTSACVLFILDEVRKKSKKD 364          
BLAST of CX294934 vs. ExPASy Swiss-Prot
Match: CHSB_IPOCO (Chalcone synthase B (Fragment) OS=Ipomoea cordatotriloba GN=CHSB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.636e-20
Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = 2
Query:    2 KNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEE 241
            +N+E  L +AF P GISDWNSIFW+ HPGG AI+D VE           A+R VLS YGN++SACVLFILDE+RKKS ++
Sbjct:  283 QNVEDCLVKAFEPYGISDWNSIFWVLHPGGNAIVDGVEETLGLAPEKLRASRDVLSGYGNLTSACVLFILDEVRKKSKKD 362          
BLAST of CX294934 vs. ExPASy Swiss-Prot
Match: CHSC_IPOPU (Chalcone synthase C (Fragment) OS=Ipomoea purpurea GN=CHSC PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.925e-17
Identity = 42/68 (61.76%), Postives = 48/68 (70.59%), Query Frame = 2
Query:    2 KNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLF 205
            +NIE  L +AF P GISDWNSIFWI HPGG AILD VE           A+R VLS+YGN++SACVLF
Sbjct:  283 QNIEDCLVKAFEPFGISDWNSIFWILHPGGNAILDGVEEKLGLEPEKLRASRDVLSQYGNLTSACVLF 350          
BLAST of CX294934 vs. ExPASy Swiss-Prot
Match: CHSA_IPONI (Chalcone synthase A (Fragment) OS=Ipomoea nil GN=CHSA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.027e-14
Identity = 38/65 (58.46%), Postives = 45/65 (69.23%), Query Frame = 2
Query:    2 KNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSAC 196
            +N+E  L +AF P GISDWNSIFWI HPGG AILD+VE           A+R VLSE GN++SAC
Sbjct:  280 QNVEDYLVKAFEPFGISDWNSIFWILHPGGIAILDRVEEKLGLEPEKLRASRDVLSESGNLTSAC 344          
BLAST of CX294934 vs. ExPASy Swiss-Prot
Match: CHS4_TRISU (Chalcone synthase 4 (Fragment) OS=Trifolium subterraneum GN=CHS4 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 2
Query:    2 KNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILD 106
            KNI+K+L EAF PLGISD+NSIFWIAHPGGPAILD
Sbjct:  277 KNIDKALVEAFQPLGISDYNSIFWIAHPGGPAILD 311          
The following BLAST results are available for this feature:
BLAST of CX294934 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHSB_IPOTF7.342e-2158.75Chalcone synthase B (Fragment) OS=Ipomoea trifida ... [more]
CHSB_IPOCO1.636e-2058.75Chalcone synthase B (Fragment) OS=Ipomoea cordatot... [more]
CHSC_IPOPU4.925e-1761.76Chalcone synthase C (Fragment) OS=Ipomoea purpurea... [more]
CHSA_IPONI1.027e-1458.46Chalcone synthase A (Fragment) OS=Ipomoea nil GN=C... [more]
CHS4_TRISU5.274e-1185.71Chalcone synthase 4 (Fragment) OS=Trifolium subter... [more]

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Properties
Property NameValue
Genbank descriptionC05057G04SK PhIFruit1 Citrus clementina cDNA clone C05057G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294934 ID=CX294934; Name=CX294934; organism=Citrus clementina; type=EST; length=553bp
AAAGAATATAGAGAAAAGCCTGTCTGAAGCGTTCGCCCCGCTTGGCATCA
GCGACTGGAACTCGATATTCTGGATCGCTCACCCCGGTGGGCCCGCAATT
CTGGACCAAGTGGAGTCTAAACTGGGCCTCAAAGGGGAGAAGCTGAAGGC
CACACGTCAAGTGTTGAGTGAGTACGGTAACATGTCAAGCGCTTGTGTCT
TGTTCATCCTTGACGAGATGAGAAAGAAGTCTGTTGAGGAAGCGAAAGCC
ACCACCGGCGAAGGGCTTGATTGGGGTGTGCTGTTCGGGTTCGGGCCGGG
GCTCACCGTCGAGACCGTTGTGCTGCACAGTGTCCCCATCAAAGCTTGAA
GTGAGAACTCCATCAGTATGTTTAGTAGTTCAGTAACTTTATGTTGTATG
CTTTCACAGTTGAGTTATTGGTTGATCGTGTGAAGGTTTAGTTTTGTCAA
TTGAGTTTAAGGCATCGTGCCTTTTCTCTTATGACGTCACCAAACCTGGG
CAACGCTTTGTGTTTATGCATAAATTCTTGGGGATTTGAGAAAGTAGTAA
ATT
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