CX294934

Overview
NameCX294934
Unique NameCX294934
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length553
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294934 vs. ExPASy Swiss-Prot
Match: CHSY_PERFR (Chalcone synthase OS=Perilla frutescens GN=CHS PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.735e-46
Identity = 89/113 (78.76%), Postives = 95/113 (84.07%), Query Frame = 2
Query:    2 KNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 340
            KNIEKSL EAF PLGISDWNS+FWIAHPGGPAILDQVE+          +TR VL EYGNMSSACVLFILDEMRK S +E  ++TGEGLDWGVLFGFGPGLTVETVVLHSVPI
Sbjct:  277 KNIEKSLKEAFGPLGISDWNSVFWIAHPGGPAILDQVEAKLGLKPEKLRSTRHVLGEYGNMSSACVLFILDEMRKSSAKEGMSSTGEGLDWGVLFGFGPGLTVETVVLHSVPI 389          
BLAST of CX294934 vs. ExPASy Swiss-Prot
Match: CHS6_SORBI (Chalcone synthase 6 OS=Sorghum bicolor GN=CHS6 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.267e-46
Identity = 89/113 (78.76%), Postives = 97/113 (85.84%), Query Frame = 2
Query:    2 KNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 340
            KNIE+SL EAF PLGI+D+NSIFW+AHPGGPAILDQVE+          ATR VLSEYGNMSSACVLFILDEMRK+S E+ +ATTGEG DWGVLFGFGPGLTVETVVLHSVPI
Sbjct:  281 KNIERSLEEAFKPLGITDYNSIFWVAHPGGPAILDQVEAKVGLKKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGQATTGEGFDWGVLFGFGPGLTVETVVLHSVPI 393          
BLAST of CX294934 vs. ExPASy Swiss-Prot
Match: CHS5_SORBI (Chalcone synthase 5 OS=Sorghum bicolor GN=CHS5 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.267e-46
Identity = 89/113 (78.76%), Postives = 97/113 (85.84%), Query Frame = 2
Query:    2 KNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 340
            KNIE+SL EAF PLGI+D+NSIFW+AHPGGPAILDQVE+          ATR VLSEYGNMSSACVLFILDEMRK+S E+ +ATTGEG DWGVLFGFGPGLTVETVVLHSVPI
Sbjct:  281 KNIERSLEEAFKPLGITDYNSIFWVAHPGGPAILDQVEAKVGLEKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGQATTGEGFDWGVLFGFGPGLTVETVVLHSVPI 393          
BLAST of CX294934 vs. ExPASy Swiss-Prot
Match: CHS3_SORBI (Chalcone synthase 3 OS=Sorghum bicolor GN=CHS3 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.267e-46
Identity = 89/113 (78.76%), Postives = 97/113 (85.84%), Query Frame = 2
Query:    2 KNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 340
            KNIE+SL EAF PLGI+D+NSIFW+AHPGGPAILDQVE+          ATR VLSEYGNMSSACVLFILDEMRK+S E+ +ATTGEG DWGVLFGFGPGLTVETVVLHSVPI
Sbjct:  281 KNIERSLEEAFKPLGITDYNSIFWVAHPGGPAILDQVEAKVGLEKERLRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGQATTGEGFDWGVLFGFGPGLTVETVVLHSVPI 393          
BLAST of CX294934 vs. ExPASy Swiss-Prot
Match: CHSY_MATIN (Chalcone synthase OS=Matthiola incana GN=CHS PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 3.866e-46
Identity = 90/113 (79.65%), Postives = 95/113 (84.07%), Query Frame = 2
Query:    2 KNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 340
            KNIEKSL EAF PLGISDWNS+FWIAHPGGPAILDQVE           ATR VLSEYGNMSSACVLFILDEMRKKS ++  ATTGEGL+WGVLFGFGPGLTVETVVL SVP+
Sbjct:  282 KNIEKSLEEAFKPLGISDWNSLFWIAHPGGPAILDQVEIKLGLKAEKMRATRHVLSEYGNMSSACVLFILDEMRKKSAQDGVATTGEGLEWGVLFGFGPGLTVETVVLRSVPL 394          
BLAST of CX294934 vs. ExPASy Swiss-Prot
Match: CHSY_CARAN (Chalcone synthase OS=Cardamine amara GN=CHS PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 3.866e-46
Identity = 89/113 (78.76%), Postives = 95/113 (84.07%), Query Frame = 2
Query:    2 KNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 340
            KNIEKSL EAF PLGISDWNS+FWIAHPGGPAILDQVE           ATR V+ EYGNMSSACVLFILDEMRKKS ++  ATTGEGL+WGVLFGFGPGLTVETVVLHSVP+
Sbjct:  283 KNIEKSLDEAFKPLGISDWNSLFWIAHPGGPAILDQVEIKLGLKEEKMRATRHVMREYGNMSSACVLFILDEMRKKSAKDGVATTGEGLEWGVLFGFGPGLTVETVVLHSVPL 395          
BLAST of CX294934 vs. ExPASy Swiss-Prot
Match: CHS2_SORBI (Chalcone synthase 2 OS=Sorghum bicolor GN=CHS2 PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 5.049e-46
Identity = 88/113 (77.88%), Postives = 97/113 (85.84%), Query Frame = 2
Query:    2 KNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 340
            KNIE+SL EAF PLGI+D+NSIFW+AHPGGPAILDQVE+          ATR VLSEYGNMSSACVLFILDEMRK+S E+ +ATTGEG +WGVLFGFGPGLTVETVVLHSVPI
Sbjct:  281 KNIERSLEEAFKPLGITDYNSIFWVAHPGGPAILDQVEAKVGLEKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGRATTGEGFEWGVLFGFGPGLTVETVVLHSVPI 393          
BLAST of CX294934 vs. ExPASy Swiss-Prot
Match: CHSY_ARATH (Chalcone synthase OS=Arabidopsis thaliana GN=CHS PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 8.613e-46
Identity = 89/113 (78.76%), Postives = 95/113 (84.07%), Query Frame = 2
Query:    2 KNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 340
            KNI KSL EAF PLGISDWNS+FWIAHPGGPAILDQVE           ATR VLSEYGNMSSACVLFILDEMR+KS ++  ATTGEGL+WGVLFGFGPGLTVETVVLHSVP+
Sbjct:  283 KNIVKSLDEAFKPLGISDWNSLFWIAHPGGPAILDQVEIKLGLKEEKMRATRHVLSEYGNMSSACVLFILDEMRRKSAKDGVATTGEGLEWGVLFGFGPGLTVETVVLHSVPL 395          
BLAST of CX294934 vs. ExPASy Swiss-Prot
Match: THS1_VITVI (Stilbene synthase 1 OS=Vitis vinifera GN=VINST1 PE=1 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 1.125e-45
Identity = 88/112 (78.57%), Postives = 96/112 (85.71%), Query Frame = 2
Query:    2 KNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 337
            +NIEK L++AF PLGISDWNS+FWIAHPGGPAILD VE+          ATR VLSEYGNMSSACVLFILDEMRKKS++  KATTGEGLDWGVLFGFGPGLT+ETVVLHSVP
Sbjct:  277 ENIEKCLTQAFDPLGISDWNSLFWIAHPGGPAILDAVEAKLNLEKKKLEATRHVLSEYGNMSSACVLFILDEMRKKSLKGEKATTGEGLDWGVLFGFGPGLTIETVVLHSVP 388          
BLAST of CX294934 vs. ExPASy Swiss-Prot
Match: CHSY_HYPAN (Chalcone synthase OS=Hypericum androsaemum PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.125e-45
Identity = 88/113 (77.88%), Postives = 96/113 (84.96%), Query Frame = 2
Query:    2 KNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 340
            KN+EKSL+EAF PLGISDWNS+FWIAHPGGPAILDQVE+          ATR VLSEYGNMSSACVLFILDEMR+KS E+   TTGEG++WGVLFGFGPGLTVETVVLHSV I
Sbjct:  277 KNVEKSLTEAFKPLGISDWNSLFWIAHPGGPAILDQVEAKLSLKPEKLRATRHVLSEYGNMSSACVLFILDEMRRKSKEDGLKTTGEGIEWGVLFGFGPGLTVETVVLHSVAI 389          
The following BLAST results are available for this feature:
BLAST of CX294934 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHSY_PERFR1.735e-4678.76Chalcone synthase OS=Perilla frutescens GN=CHS PE=... [more]
CHS6_SORBI2.267e-4678.76Chalcone synthase 6 OS=Sorghum bicolor GN=CHS6 PE=... [more]
CHS5_SORBI2.267e-4678.76Chalcone synthase 5 OS=Sorghum bicolor GN=CHS5 PE=... [more]
CHS3_SORBI2.267e-4678.76Chalcone synthase 3 OS=Sorghum bicolor GN=CHS3 PE=... [more]
CHSY_MATIN3.866e-4679.65Chalcone synthase OS=Matthiola incana GN=CHS PE=2 ... [more]
CHSY_CARAN3.866e-4678.76Chalcone synthase OS=Cardamine amara GN=CHS PE=3 S... [more]
CHS2_SORBI5.049e-4677.88Chalcone synthase 2 OS=Sorghum bicolor GN=CHS2 PE=... [more]
CHSY_ARATH8.613e-4678.76Chalcone synthase OS=Arabidopsis thaliana GN=CHS P... [more]
THS1_VITVI1.125e-4578.57Stilbene synthase 1 OS=Vitis vinifera GN=VINST1 PE... [more]
CHSY_HYPAN1.125e-4577.88Chalcone synthase OS=Hypericum androsaemum PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionC05057G04SK PhIFruit1 Citrus clementina cDNA clone C05057G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294934 ID=CX294934; Name=CX294934; organism=Citrus clementina; type=EST; length=553bp
AAAGAATATAGAGAAAAGCCTGTCTGAAGCGTTCGCCCCGCTTGGCATCA
GCGACTGGAACTCGATATTCTGGATCGCTCACCCCGGTGGGCCCGCAATT
CTGGACCAAGTGGAGTCTAAACTGGGCCTCAAAGGGGAGAAGCTGAAGGC
CACACGTCAAGTGTTGAGTGAGTACGGTAACATGTCAAGCGCTTGTGTCT
TGTTCATCCTTGACGAGATGAGAAAGAAGTCTGTTGAGGAAGCGAAAGCC
ACCACCGGCGAAGGGCTTGATTGGGGTGTGCTGTTCGGGTTCGGGCCGGG
GCTCACCGTCGAGACCGTTGTGCTGCACAGTGTCCCCATCAAAGCTTGAA
GTGAGAACTCCATCAGTATGTTTAGTAGTTCAGTAACTTTATGTTGTATG
CTTTCACAGTTGAGTTATTGGTTGATCGTGTGAAGGTTTAGTTTTGTCAA
TTGAGTTTAAGGCATCGTGCCTTTTCTCTTATGACGTCACCAAACCTGGG
CAACGCTTTGTGTTTATGCATAAATTCTTGGGGATTTGAGAAAGTAGTAA
ATT
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