CX294934

Overview
NameCX294934
Unique NameCX294934
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length553
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10260 contig Ccv1_Contig10260:885..1437. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294934 vs. ExPASy Swiss-Prot
Match: THS3_VITVI (Stilbene synthase 3 (Fragment) OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.275e-45
Identity = 86/113 (76.11%), Postives = 96/113 (84.96%), Query Frame = 2
Query:    2 KNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 340
            +N+EK L++AF PLGISDWNS+FWIAHPGGPAILD VE+          ATR VLSEYGNMSSACVLFILDEMRKKS +  KATTGEGLDWGVLFGFGPGLT+ETVVLHS+P+
Sbjct:  274 ENVEKCLTQAFDPLGISDWNSLFWIAHPGGPAILDAVEAKLNLDKKKLEATRHVLSEYGNMSSACVLFILDEMRKKSHKGEKATTGEGLDWGVLFGFGPGLTIETVVLHSIPM 386          
BLAST of CX294934 vs. ExPASy Swiss-Prot
Match: CHS3_GERHY (Chalcone synthase 3 OS=Gerbera hybrida GN=CHS3 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.275e-45
Identity = 86/112 (76.79%), Postives = 96/112 (85.71%), Query Frame = 2
Query:    2 KNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 337
            KNIEK+L +AF+PL I+DWNSIFWIAHPGGPAILDQVE           A+R VLSEYGNMSSACVLFILDEMRKKS+++ K TTGEGL+WGVLFGFGPGLTVETVVLHS+P
Sbjct:  283 KNIEKALIQAFSPLNINDWNSIFWIAHPGGPAILDQVEFKLGLREEKLRASRHVLSEYGNMSSACVLFILDEMRKKSIKDGKTTTGEGLEWGVLFGFGPGLTVETVVLHSLP 394          
BLAST of CX294934 vs. ExPASy Swiss-Prot
Match: CHS1_DAUCA (Chalcone synthase 1 OS=Daucus carota GN=CHS1 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.275e-45
Identity = 88/112 (78.57%), Postives = 93/112 (83.04%), Query Frame = 2
Query:    2 KNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 337
            KNI KSL EAF PLGISDWNSIFWIAHPGGPAILDQVE+          +TRQVL +YGNMSSACVLFILDEMRK S ++   TTGEGLDWGVLFGFGPGLTVETVVLHSVP
Sbjct:  277 KNIRKSLVEAFKPLGISDWNSIFWIAHPGGPAILDQVETELSLKPEKLKSTRQVLRDYGNMSSACVLFILDEMRKASAKDGHRTTGEGLDWGVLFGFGPGLTVETVVLHSVP 388          
BLAST of CX294934 vs. ExPASy Swiss-Prot
Match: THS7_VITVI (Stilbene synthase 6 OS=Vitis vinifera GN=STS PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 5.583e-45
Identity = 86/112 (76.79%), Postives = 95/112 (84.82%), Query Frame = 2
Query:    2 KNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 337
            +NIEK L++AF PLGISDWNS+FWIAHPGGPAILD VE+          ATR VLSEYGNMSSACVLFILDEMRKKS++   ATTGEGLDWGVLFGFGPGLT+ETVVLHS+P
Sbjct:  277 ENIEKCLTQAFDPLGISDWNSLFWIAHPGGPAILDAVEAKLNLEKKKLEATRHVLSEYGNMSSACVLFILDEMRKKSLKGENATTGEGLDWGVLFGFGPGLTIETVVLHSIP 388          
BLAST of CX294934 vs. ExPASy Swiss-Prot
Match: CHS3_CAMSI (Chalcone synthase 3 OS=Camellia sinensis GN=CHS3 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 7.291e-45
Identity = 88/110 (80.00%), Postives = 92/110 (83.64%), Query Frame = 2
Query:    5 NIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 334
            N+EKSL EAF PLGISDWNS+FWIAHPGGPAILDQVE           ATR VLSEYGNMSSACVLFILDEMRKKS EE   TTGEGL+WGVLFGFGPGLTVETVVLHS+
Sbjct:  278 NVEKSLVEAFQPLGISDWNSLFWIAHPGGPAILDQVELKLGLKEEKLRATRHVLSEYGNMSSACVLFILDEMRKKSAEEGLKTTGEGLEWGVLFGFGPGLTVETVVLHSL 387          
BLAST of CX294934 vs. ExPASy Swiss-Prot
Match: CHS1_HORVU (Chalcone synthase 1 OS=Hordeum vulgare GN=CHS1 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 7.291e-45
Identity = 86/115 (74.78%), Postives = 94/115 (81.74%), Query Frame = 2
Query:    2 KNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 346
            KNIE++L EAF PLGI  WNS+FWIAH GGPAILD VE+          ATR VLSEYGNMSSACVLFI+DEMRK+S E+  ATTGEG+DWGVLFGFGPGLTVETVVLHSVPI A
Sbjct:  280 KNIERALEEAFKPLGIDHWNSVFWIAHQGGPAILDMVEAKVNLNKERMRATRHVLSEYGNMSSACVLFIMDEMRKRSAEDGHATTGEGMDWGVLFGFGPGLTVETVVLHSVPISA 394          
BLAST of CX294934 vs. ExPASy Swiss-Prot
Match: CHS1_CAMSI (Chalcone synthase 1 OS=Camellia sinensis GN=CHS1 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 7.291e-45
Identity = 88/111 (79.28%), Postives = 93/111 (83.78%), Query Frame = 2
Query:    2 KNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 334
            KNIEKSL+EAF PLGISDWNS+FWIAHPGGPAILDQVE           ATR VLSEYGNMSSACVLFILDEMRKKS  +   TTGEGL+WGVLFGFGPGLTVETVVLHS+
Sbjct:  277 KNIEKSLAEAFQPLGISDWNSLFWIAHPGGPAILDQVELKLGLKEEKLRATRHVLSEYGNMSSACVLFILDEMRKKSAADGLKTTGEGLEWGVLFGFGPGLTVETVVLHSL 387          
BLAST of CX294934 vs. ExPASy Swiss-Prot
Match: CHSD_IPONI (Chalcone synthase D OS=Ipomoea nil GN=CHSD PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 9.523e-45
Identity = 88/111 (79.28%), Postives = 91/111 (81.98%), Query Frame = 2
Query:    5 NIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 337
            NIEK LSEAF PLGISDWNSIFWIAHPGGPAILDQVE           ATR VLSEYGNMSSACVLFILDEMRK S  +   TTGEGL+WGVLFGFGPGLT+ETVVLHSVP
Sbjct:  277 NIEKCLSEAFNPLGISDWNSIFWIAHPGGPAILDQVEDKLGLKPEKLRATRHVLSEYGNMSSACVLFILDEMRKASSNDGLGTTGEGLEWGVLFGFGPGLTIETVVLHSVP 387          
BLAST of CX294934 vs. ExPASy Swiss-Prot
Match: CHSA_PETHY (Chalcone synthase A OS=Petunia hybrida GN=CHSA PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 9.523e-45
Identity = 88/111 (79.28%), Postives = 92/111 (82.88%), Query Frame = 2
Query:    2 KNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 334
            KNIEKSL EAF PLGISDWNS+FWIAHPGGPAILDQVE           ATR VLS+YGNMSSACVLFILDEMRK S +E   TTGEGL+WGVLFGFGPGLTVETVVLHSV
Sbjct:  277 KNIEKSLEEAFKPLGISDWNSLFWIAHPGGPAILDQVEIKLGLKPEKLKATRNVLSDYGNMSSACVLFILDEMRKASAKEGLGTTGEGLEWGVLFGFGPGLTVETVVLHSV 387          
BLAST of CX294934 vs. ExPASy Swiss-Prot
Match: CHS3_TRISU (Chalcone synthase 3 OS=Trifolium subterraneum GN=CHS3 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 9.523e-45
Identity = 88/113 (77.88%), Postives = 95/113 (84.07%), Query Frame = 2
Query:    2 KNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 340
            KNI+K+L EAF PLGISD+NSIFWIAHPGGPAILDQVE           ATR+VLSEYGNMSSACVLFILDEMRKKS ++   TTGEGLDWGVLFGFGPGLT+ETVVLHSV I
Sbjct:  277 KNIDKALVEAFQPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMKATREVLSEYGNMSSACVLFILDEMRKKSTKDGLKTTGEGLDWGVLFGFGPGLTIETVVLHSVAI 389          
The following BLAST results are available for this feature:
BLAST of CX294934 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
THS3_VITVI4.275e-4576.11Stilbene synthase 3 (Fragment) OS=Vitis vinifera P... [more]
CHS3_GERHY4.275e-4576.79Chalcone synthase 3 OS=Gerbera hybrida GN=CHS3 PE=... [more]
CHS1_DAUCA4.275e-4578.57Chalcone synthase 1 OS=Daucus carota GN=CHS1 PE=2 ... [more]
THS7_VITVI5.583e-4576.79Stilbene synthase 6 OS=Vitis vinifera GN=STS PE=2 ... [more]
CHS3_CAMSI7.291e-4580.00Chalcone synthase 3 OS=Camellia sinensis GN=CHS3 P... [more]
CHS1_HORVU7.291e-4574.78Chalcone synthase 1 OS=Hordeum vulgare GN=CHS1 PE=... [more]
CHS1_CAMSI7.291e-4579.28Chalcone synthase 1 OS=Camellia sinensis GN=CHS1 P... [more]
CHSD_IPONI9.523e-4579.28Chalcone synthase D OS=Ipomoea nil GN=CHSD PE=2 SV... [more]
CHSA_PETHY9.523e-4579.28Chalcone synthase A OS=Petunia hybrida GN=CHSA PE=... [more]
CHS3_TRISU9.523e-4577.88Chalcone synthase 3 OS=Trifolium subterraneum GN=C... [more]

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Properties
Property NameValue
Genbank descriptionC05057G04SK PhIFruit1 Citrus clementina cDNA clone C05057G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294934 ID=CX294934; Name=CX294934; organism=Citrus clementina; type=EST; length=553bp
AAAGAATATAGAGAAAAGCCTGTCTGAAGCGTTCGCCCCGCTTGGCATCA
GCGACTGGAACTCGATATTCTGGATCGCTCACCCCGGTGGGCCCGCAATT
CTGGACCAAGTGGAGTCTAAACTGGGCCTCAAAGGGGAGAAGCTGAAGGC
CACACGTCAAGTGTTGAGTGAGTACGGTAACATGTCAAGCGCTTGTGTCT
TGTTCATCCTTGACGAGATGAGAAAGAAGTCTGTTGAGGAAGCGAAAGCC
ACCACCGGCGAAGGGCTTGATTGGGGTGTGCTGTTCGGGTTCGGGCCGGG
GCTCACCGTCGAGACCGTTGTGCTGCACAGTGTCCCCATCAAAGCTTGAA
GTGAGAACTCCATCAGTATGTTTAGTAGTTCAGTAACTTTATGTTGTATG
CTTTCACAGTTGAGTTATTGGTTGATCGTGTGAAGGTTTAGTTTTGTCAA
TTGAGTTTAAGGCATCGTGCCTTTTCTCTTATGACGTCACCAAACCTGGG
CAACGCTTTGTGTTTATGCATAAATTCTTGGGGATTTGAGAAAGTAGTAA
ATT
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