CX294939

Overview
NameCX294939
Unique NameCX294939
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_SULDN (50S ribosomal protein L1 OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=rplA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.012e-28
Identity = 50/102 (49.02%), Postives = 69/102 (67.65%), Query Frame = 2
Query:  209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*KE 514
            SKR+ ++    +  K Y +  A  L+K + S KF ET E  F LN+DP++ DQ +R  + LP GTGK+V+VAV A+G K DEAK AGAD+VG DDL++Q K+
Sbjct:    2 SKRYKQLTEKIDVTKAYSVDEASLLVKNLVSAKFDETVEVAFNLNVDPRHADQMIRGAIVLPHGTGKTVRVAVFAKGAKADEAKAAGADIVGTDDLVQQIKD 103          

HSP 2 Score: 43.5134 bits (101), Expect = 6.012e-28
Identity = 18/35 (51.43%), Postives = 25/35 (71.43%), Query Frame = 1
Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            IK G   FD ++A+PD M  V  +G+ILGP+G+MP
Sbjct:  101 IKDGIFNFDIVVAAPDCMGLVGQIGRILGPKGMMP 135          
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_BACP2 (50S ribosomal protein L1 OS=Bacillus pumilus (strain SAFR-032) GN=rplA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.012e-28
Identity = 48/98 (48.98%), Postives = 64/98 (65.31%), Query Frame = 2
Query:  206 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLI 499
            + K+++E   L E  K YD+  A+SL K+ ++ KF  T E  FRL +DP+ NDQQ+R  V LP GTGK+ +V V A+GEK  EA+ AGAD VG  D I
Sbjct:    4 KGKKYVEAAKLIERTKAYDVAEAVSLTKKANTAKFDATVEVAFRLGVDPRKNDQQIRGAVVLPNGTGKTQRVLVFAKGEKAKEAEAAGADYVGDSDYI 101          

HSP 2 Score: 48.521 bits (114), Expect = 6.012e-28
Identity = 19/35 (54.29%), Postives = 29/35 (82.86%), Query Frame = 1
Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            I+ G+ EFD ++A+PDMM +V  +G++LGP+GLMP
Sbjct:  104 IQQGWFEFDVIVATPDMMGEVGKIGRVLGPKGLMP 138          
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_SINMW (50S ribosomal protein L1 OS=Sinorhizobium medicae (strain WSM419) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.012e-28
Identity = 46/95 (48.42%), Postives = 66/95 (69.47%), Query Frame = 2
Query:  227 IQNLREG---KKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502
            +Q  REG    K Y L  A++++K+ ++ KF ET E    L +DP++ DQ +R  V+LP GTG+SV+VAV A+G K DEAK AGAD+VG ++L+E
Sbjct:    8 VQKSREGVDPAKLYGLTEAVTMIKERATAKFDETIEVAMNLGVDPRHADQMVRGVVNLPNGTGRSVRVAVFARGAKADEAKAAGADVVGAEELVE 102          

HSP 2 Score: 50.8322 bits (120), Expect = 6.012e-28
Identity = 21/35 (60.00%), Postives = 29/35 (82.86%), Query Frame = 1
Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            ++GG ++FD+ IA+PDMM  V  LGK+LGPRG+MP
Sbjct:  104 VQGGKIDFDRCIATPDMMPLVGRLGKVLGPRGMMP 138          
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_THEP1 (50S ribosomal protein L1 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.824e-28
Identity = 48/105 (45.71%), Postives = 68/105 (64.76%), Query Frame = 2
Query:  209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*KEDSW 523
            SKR+LE +   +  K YDL  AI L+K+ ++ KF ET E H +  ID +  +Q +R TV LP GTGK V+V V A+GE   EA  AGAD VG +DL+E+ +++ +
Sbjct:    5 SKRYLEARKFVDRTKYYDLDEAIELVKKTATAKFDETIELHIQTGIDYRKPEQHIRGTVVLPHGTGKEVRVLVFAKGEAAKEALEAGADYVGAEDLVEKIEKEGF 109          

HSP 2 Score: 50.8322 bits (120), Expect = 7.824e-28
Identity = 23/34 (67.65%), Postives = 27/34 (79.41%), Query Frame = 1
Query:  508 KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            K GF++FD  IA+PDMM  +  LGKILGPRGLMP
Sbjct:  106 KEGFLDFDVAIATPDMMRVIGRLGKILGPRGLMP 139          
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_METSB (50S ribosomal protein L1 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 7.827e-28
Identity = 46/94 (48.94%), Postives = 64/94 (68.09%), Query Frame = 2
Query:  227 IQNLREG---KKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLI 499
            I   REG    K Y ++ AI+L+K+ +S KF ET E    L +DPK+ DQ +R  V+LP GTG++++VAV A+G K DEA  AGAD+VG +DL+
Sbjct:    8 ISKAREGIDRVKLYPIRDAIALIKERASAKFDETVEIAMNLGVDPKHADQMVRGVVNLPNGTGRTLRVAVFARGAKADEATAAGADIVGAEDLV 101          

HSP 2 Score: 52.7582 bits (125), Expect = 7.827e-28
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 1
Query:  502 TIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            T++GG + FD+ IA+PDMM  V  LGK+LGPRGLMP
Sbjct:  103 TVQGGTIAFDRCIATPDMMPLVGRLGKVLGPRGLMP 138          
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_XANP2 (50S ribosomal protein L1 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.827e-28
Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = 2
Query:  206 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502
            + KR   +    +  K Y L  A++LLK+ ++ KF ET E    L +DP++ DQ +R   +LP G+G++V+VAV A+G K DEAK AGAD+VG +DL+E
Sbjct:    4 QGKRIRAVNEGIDRVKLYPLDEALALLKERTTAKFDETIEVALNLGVDPRHADQMVRGVCNLPNGSGRTVRVAVFARGAKADEAKAAGADIVGAEDLLE 102          

HSP 2 Score: 54.299 bits (129), Expect = 7.827e-28
Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 1
Query:  502 TIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            TI+GG +EFD+ IA+PD+M  V  LGK+LGPRGLMP
Sbjct:  103 TIQGGTIEFDRCIATPDLMPLVGRLGKVLGPRGLMP 138          
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_DESMR (50S ribosomal protein L1 OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=rplA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.019e-27
Identity = 45/100 (45.00%), Postives = 63/100 (63.00%), Query Frame = 2
Query:  230 QNLREGKKE------YDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*K 511
            +N RE  K+      Y++  A++L  Q    KF ET +    L ++PKY+DQ +R  VSLP G GK+++VA   +G+K  EA+ AGAD VGGDDLIE+ K
Sbjct:    6 KNYREAIKDIDLTAKYEVSEAMALTVQTGKAKFDETVDVALNLGVNPKYSDQMVRGAVSLPHGLGKTIRVAAFCKGDKETEAREAGADFVGGDDLIEKVK 105          

HSP 2 Score: 55.0694 bits (131), Expect = 1.019e-27
Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 1
Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            +K GF++FD  +A+PDMM  V  +GKILGPRGLMP
Sbjct:  104 VKNGFLDFDSAVATPDMMASVGKIGKILGPRGLMP 138          
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_RHILO (50S ribosomal protein L1 OS=Rhizobium loti GN=rplA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.019e-27
Identity = 48/95 (50.53%), Postives = 64/95 (67.37%), Query Frame = 2
Query:  227 IQNLREG---KKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502
            +   REG    K Y L  A+ LLK  SS KF ET E    L +DP++ DQ +R  V+LP GTG+SV+VAV A+G+K +EAK AGAD+VG +DL++
Sbjct:    8 VSKTREGIDPNKAYALGEALKLLKDRSSVKFDETVEVAMNLGVDPRHADQMVRGVVNLPNGTGRSVRVAVFARGDKAEEAKAAGADIVGAEDLVD 102          

HSP 2 Score: 48.1358 bits (113), Expect = 1.019e-27
Identity = 20/35 (57.14%), Postives = 28/35 (80.00%), Query Frame = 1
Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            ++ G ++FD+ IA+PDMM  V  LGK+LGPRG+MP
Sbjct:  104 VQKGTIDFDRCIATPDMMPLVGRLGKVLGPRGMMP 138          
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_CHLTR (50S ribosomal protein L1 OS=Chlamydia trachomatis GN=rplA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.019e-27
Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = 2
Query:  212 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*K 511
            KR   IQ   +  K Y L  AI +LKQ  + +F +T +   +L IDP+ +DQQ+R +VSLP GTGK +++ V A G+K  EA  AGAD VG DDL+E+ K
Sbjct:    6 KRIRGIQETYDLAKSYSLGEAIDILKQCPTVRFDQTVDVSVKLGIDPRKSDQQIRGSVSLPHGTGKVLRILVFAAGDKAAEAIEAGADFVGSDDLVEKIK 105          

HSP 2 Score: 51.9878 bits (123), Expect = 1.019e-27
Identity = 22/35 (62.86%), Postives = 29/35 (82.86%), Query Frame = 1
Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            IKGG+++FD  +A+PDMM +V  LGK+LGPR LMP
Sbjct:  104 IKGGWVDFDVAVATPDMMREVGKLGKVLGPRNLMP 138          
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_CHLTA (50S ribosomal protein L1 OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.019e-27
Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = 2
Query:  212 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*K 511
            KR   IQ   +  K Y L  AI +LKQ  + +F +T +   +L IDP+ +DQQ+R +VSLP GTGK +++ V A G+K  EA  AGAD VG DDL+E+ K
Sbjct:    6 KRIRGIQETYDLAKSYSLGEAIDILKQCPTVRFDQTVDVSVKLGIDPRKSDQQIRGSVSLPHGTGKVLRILVFAAGDKAAEAIEAGADFVGSDDLVEKIK 105          

HSP 2 Score: 51.9878 bits (123), Expect = 1.019e-27
Identity = 22/35 (62.86%), Postives = 29/35 (82.86%), Query Frame = 1
Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            IKGG+++FD  +A+PDMM +V  LGK+LGPR LMP
Sbjct:  104 IKGGWVDFDVAVATPDMMREVGKLGKVLGPRNLMP 138          
The following BLAST results are available for this feature:
BLAST of CX294939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_SULDN6.012e-2849.0250S ribosomal protein L1 OS=Sulfurimonas denitrifi... [more]
RL1_BACP26.012e-2848.9850S ribosomal protein L1 OS=Bacillus pumilus (stra... [more]
RL1_SINMW6.012e-2848.4250S ribosomal protein L1 OS=Sinorhizobium medicae ... [more]
RL1_THEP17.824e-2845.7150S ribosomal protein L1 OS=Thermotoga petrophila ... [more]
RL1_METSB7.827e-2848.9450S ribosomal protein L1 OS=Methylocella silvestri... [more]
RL1_XANP27.827e-2844.4450S ribosomal protein L1 OS=Xanthobacter autotroph... [more]
RL1_DESMR1.019e-2745.0050S ribosomal protein L1 OS=Desulfovibrio magnetic... [more]
RL1_RHILO1.019e-2750.5350S ribosomal protein L1 OS=Rhizobium loti GN=rplA... [more]
RL1_CHLTR1.019e-2747.0050S ribosomal protein L1 OS=Chlamydia trachomatis ... [more]
RL1_CHLTA1.019e-2747.0050S ribosomal protein L1 OS=Chlamydia trachomatis ... [more]

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Properties
Property NameValue
Genbank descriptionC05057H01SK PhIFruit1 Citrus clementina cDNA clone C05057H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294939 ID=CX294939; Name=CX294939; organism=Citrus clementina; type=EST; length=609bp
GAGACAGAACAAAAATGGGCTTCCTGGACACATGCTGGCGGCTGCTTCTG
CTGTCGAAGCTGATACTGACTTGGCCACTGACGATGTGGAGGACGATACT
CAGGGAGGTGCTGAAGGAGCAACTGCTACTGCTACTGCTACTGCTACTAT
TTCAACTAAGCCTAAGAAAGGCAAGGCTGCGTTGCCTCTCAAGAGAGACA
GGACTAGGTCTAAAAGATTCCTGGAAATTCAAAATTTGAGGGAAGGCAAG
AAAGAGTATGATTTGAAGACGGCAATATCTTTGTTGAAGCAGATGTCAAG
TACAAAGTTCACGGAAACAGCTGAAGCCCATTTTCGCCTCAACATTGATC
CCAAATACAATGATCAACAGCTTAGAGCAACAGTGAGTTTACCCAAGGGA
ACTGGAAAATCTGTTAAGGTGGCTGTTCTTGCTCAAGGTGAAAAGTTCGA
TGAAGCAAAAAATGCAGGAGCAGATTTGGTTGGTGGTGATGACTTGATTG
AACAATAAAAGGAGGATTCATGGAGTTCGACAAGCTAATTGCTTCACCAG
ATATGATGGTTAAGGTTGCCAGCCTAGGAAAAATTCTTGGACCACGGGGA
CTCATGCCA
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