CX294939
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_SULDN (50S ribosomal protein L1 OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=rplA PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 6.012e-28 Identity = 50/102 (49.02%), Postives = 69/102 (67.65%), Query Frame = 2 Query: 209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*KE 514 SKR+ ++ + K Y + A L+K + S KF ET E F LN+DP++ DQ +R + LP GTGK+V+VAV A+G K DEAK AGAD+VG DDL++Q K+ Sbjct: 2 SKRYKQLTEKIDVTKAYSVDEASLLVKNLVSAKFDETVEVAFNLNVDPRHADQMIRGAIVLPHGTGKTVRVAVFAKGAKADEAKAAGADIVGTDDLVQQIKD 103 HSP 2 Score: 43.5134 bits (101), Expect = 6.012e-28 Identity = 18/35 (51.43%), Postives = 25/35 (71.43%), Query Frame = 1 Query: 505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609 IK G FD ++A+PD M V +G+ILGP+G+MP Sbjct: 101 IKDGIFNFDIVVAAPDCMGLVGQIGRILGPKGMMP 135
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_BACP2 (50S ribosomal protein L1 OS=Bacillus pumilus (strain SAFR-032) GN=rplA PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 6.012e-28 Identity = 48/98 (48.98%), Postives = 64/98 (65.31%), Query Frame = 2 Query: 206 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLI 499 + K+++E L E K YD+ A+SL K+ ++ KF T E FRL +DP+ NDQQ+R V LP GTGK+ +V V A+GEK EA+ AGAD VG D I Sbjct: 4 KGKKYVEAAKLIERTKAYDVAEAVSLTKKANTAKFDATVEVAFRLGVDPRKNDQQIRGAVVLPNGTGKTQRVLVFAKGEKAKEAEAAGADYVGDSDYI 101 HSP 2 Score: 48.521 bits (114), Expect = 6.012e-28 Identity = 19/35 (54.29%), Postives = 29/35 (82.86%), Query Frame = 1 Query: 505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609 I+ G+ EFD ++A+PDMM +V +G++LGP+GLMP Sbjct: 104 IQQGWFEFDVIVATPDMMGEVGKIGRVLGPKGLMP 138
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_SINMW (50S ribosomal protein L1 OS=Sinorhizobium medicae (strain WSM419) GN=rplA PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.012e-28 Identity = 46/95 (48.42%), Postives = 66/95 (69.47%), Query Frame = 2 Query: 227 IQNLREG---KKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502 +Q REG K Y L A++++K+ ++ KF ET E L +DP++ DQ +R V+LP GTG+SV+VAV A+G K DEAK AGAD+VG ++L+E Sbjct: 8 VQKSREGVDPAKLYGLTEAVTMIKERATAKFDETIEVAMNLGVDPRHADQMVRGVVNLPNGTGRSVRVAVFARGAKADEAKAAGADVVGAEELVE 102 HSP 2 Score: 50.8322 bits (120), Expect = 6.012e-28 Identity = 21/35 (60.00%), Postives = 29/35 (82.86%), Query Frame = 1 Query: 505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609 ++GG ++FD+ IA+PDMM V LGK+LGPRG+MP Sbjct: 104 VQGGKIDFDRCIATPDMMPLVGRLGKVLGPRGMMP 138
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_THEP1 (50S ribosomal protein L1 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplA PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 7.824e-28 Identity = 48/105 (45.71%), Postives = 68/105 (64.76%), Query Frame = 2 Query: 209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*KEDSW 523 SKR+LE + + K YDL AI L+K+ ++ KF ET E H + ID + +Q +R TV LP GTGK V+V V A+GE EA AGAD VG +DL+E+ +++ + Sbjct: 5 SKRYLEARKFVDRTKYYDLDEAIELVKKTATAKFDETIELHIQTGIDYRKPEQHIRGTVVLPHGTGKEVRVLVFAKGEAAKEALEAGADYVGAEDLVEKIEKEGF 109 HSP 2 Score: 50.8322 bits (120), Expect = 7.824e-28 Identity = 23/34 (67.65%), Postives = 27/34 (79.41%), Query Frame = 1 Query: 508 KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609 K GF++FD IA+PDMM + LGKILGPRGLMP Sbjct: 106 KEGFLDFDVAIATPDMMRVIGRLGKILGPRGLMP 139
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_METSB (50S ribosomal protein L1 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rplA PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 7.827e-28 Identity = 46/94 (48.94%), Postives = 64/94 (68.09%), Query Frame = 2 Query: 227 IQNLREG---KKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLI 499 I REG K Y ++ AI+L+K+ +S KF ET E L +DPK+ DQ +R V+LP GTG++++VAV A+G K DEA AGAD+VG +DL+ Sbjct: 8 ISKAREGIDRVKLYPIRDAIALIKERASAKFDETVEIAMNLGVDPKHADQMVRGVVNLPNGTGRTLRVAVFARGAKADEATAAGADIVGAEDLV 101 HSP 2 Score: 52.7582 bits (125), Expect = 7.827e-28 Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 1 Query: 502 TIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609 T++GG + FD+ IA+PDMM V LGK+LGPRGLMP Sbjct: 103 TVQGGTIAFDRCIATPDMMPLVGRLGKVLGPRGLMP 138
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_XANP2 (50S ribosomal protein L1 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplA PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 7.827e-28 Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = 2 Query: 206 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502 + KR + + K Y L A++LLK+ ++ KF ET E L +DP++ DQ +R +LP G+G++V+VAV A+G K DEAK AGAD+VG +DL+E Sbjct: 4 QGKRIRAVNEGIDRVKLYPLDEALALLKERTTAKFDETIEVALNLGVDPRHADQMVRGVCNLPNGSGRTVRVAVFARGAKADEAKAAGADIVGAEDLLE 102 HSP 2 Score: 54.299 bits (129), Expect = 7.827e-28 Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 1 Query: 502 TIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609 TI+GG +EFD+ IA+PD+M V LGK+LGPRGLMP Sbjct: 103 TIQGGTIEFDRCIATPDLMPLVGRLGKVLGPRGLMP 138
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_DESMR (50S ribosomal protein L1 OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=rplA PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.019e-27 Identity = 45/100 (45.00%), Postives = 63/100 (63.00%), Query Frame = 2 Query: 230 QNLREGKKE------YDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*K 511 +N RE K+ Y++ A++L Q KF ET + L ++PKY+DQ +R VSLP G GK+++VA +G+K EA+ AGAD VGGDDLIE+ K Sbjct: 6 KNYREAIKDIDLTAKYEVSEAMALTVQTGKAKFDETVDVALNLGVNPKYSDQMVRGAVSLPHGLGKTIRVAAFCKGDKETEAREAGADFVGGDDLIEKVK 105 HSP 2 Score: 55.0694 bits (131), Expect = 1.019e-27 Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 1 Query: 505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609 +K GF++FD +A+PDMM V +GKILGPRGLMP Sbjct: 104 VKNGFLDFDSAVATPDMMASVGKIGKILGPRGLMP 138
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_RHILO (50S ribosomal protein L1 OS=Rhizobium loti GN=rplA PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.019e-27 Identity = 48/95 (50.53%), Postives = 64/95 (67.37%), Query Frame = 2 Query: 227 IQNLREG---KKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502 + REG K Y L A+ LLK SS KF ET E L +DP++ DQ +R V+LP GTG+SV+VAV A+G+K +EAK AGAD+VG +DL++ Sbjct: 8 VSKTREGIDPNKAYALGEALKLLKDRSSVKFDETVEVAMNLGVDPRHADQMVRGVVNLPNGTGRSVRVAVFARGDKAEEAKAAGADIVGAEDLVD 102 HSP 2 Score: 48.1358 bits (113), Expect = 1.019e-27 Identity = 20/35 (57.14%), Postives = 28/35 (80.00%), Query Frame = 1 Query: 505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609 ++ G ++FD+ IA+PDMM V LGK+LGPRG+MP Sbjct: 104 VQKGTIDFDRCIATPDMMPLVGRLGKVLGPRGMMP 138
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_CHLTR (50S ribosomal protein L1 OS=Chlamydia trachomatis GN=rplA PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.019e-27 Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = 2 Query: 212 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*K 511 KR IQ + K Y L AI +LKQ + +F +T + +L IDP+ +DQQ+R +VSLP GTGK +++ V A G+K EA AGAD VG DDL+E+ K Sbjct: 6 KRIRGIQETYDLAKSYSLGEAIDILKQCPTVRFDQTVDVSVKLGIDPRKSDQQIRGSVSLPHGTGKVLRILVFAAGDKAAEAIEAGADFVGSDDLVEKIK 105 HSP 2 Score: 51.9878 bits (123), Expect = 1.019e-27 Identity = 22/35 (62.86%), Postives = 29/35 (82.86%), Query Frame = 1 Query: 505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609 IKGG+++FD +A+PDMM +V LGK+LGPR LMP Sbjct: 104 IKGGWVDFDVAVATPDMMREVGKLGKVLGPRNLMP 138
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_CHLTA (50S ribosomal protein L1 OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=rplA PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.019e-27 Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = 2 Query: 212 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*K 511 KR IQ + K Y L AI +LKQ + +F +T + +L IDP+ +DQQ+R +VSLP GTGK +++ V A G+K EA AGAD VG DDL+E+ K Sbjct: 6 KRIRGIQETYDLAKSYSLGEAIDILKQCPTVRFDQTVDVSVKLGIDPRKSDQQIRGSVSLPHGTGKVLRILVFAAGDKAAEAIEAGADFVGSDDLVEKIK 105 HSP 2 Score: 51.9878 bits (123), Expect = 1.019e-27 Identity = 22/35 (62.86%), Postives = 29/35 (82.86%), Query Frame = 1 Query: 505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609 IKGG+++FD +A+PDMM +V LGK+LGPR LMP Sbjct: 104 IKGGWVDFDVAVATPDMMREVGKLGKVLGPRNLMP 138 The following BLAST results are available for this feature:
BLAST of CX294939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX294939 ID=CX294939; Name=CX294939; organism=Citrus clementina; type=EST; length=609bpback to top |