CX294939 | Citrus Genome Database

Overview


Name	CX294939
Unique Name	CX294939
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	609

Libraries


Library Name	Type
PhIFruit1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_CHLT2 (50S ribosomal protein L1 OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.019e-27
Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = 2

Query:  212 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*K 511
            KR   IQ   +  K Y L  AI +LKQ  + +F +T +   +L IDP+ +DQQ+R +VSLP GTGK +++ V A G+K  EA  AGAD VG DDL+E+ K
Sbjct:    6 KRIRGIQETYDLAKSYSLGEAIDILKQCPTVRFDQTVDVSVKLGIDPRKSDQQIRGSVSLPHGTGKVLRILVFAAGDKAAEAIEAGADFVGSDDLVEKIK 105

HSP 2 Score: 51.9878 bits (123), Expect = 1.019e-27
Identity = 22/35 (62.86%), Postives = 29/35 (82.86%), Query Frame = 1

Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            IKGG+++FD  +A+PDMM +V  LGK+LGPR LMP
Sbjct:  104 IKGGWVDFDVAVATPDMMREVGKLGKVLGPRNLMP 138

[Close]

BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_RHILW (50S ribosomal protein L1 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.326e-27
Identity = 46/94 (48.94%), Postives = 63/94 (67.02%), Query Frame = 2

Query:  230 QNLREG---KKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502
            Q + EG    K Y L  AI ++K+ +  KF ET E    L +DP++ DQ +R  V+LP GTG++V+VAV A+G K DEAK AGAD+VG +DL+E
Sbjct:    7 QKINEGVDPTKLYALSLAIGMVKERAVAKFDETIEVSMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGVKADEAKAAGADIVGAEDLVE 100

HSP 2 Score: 51.9878 bits (123), Expect = 1.326e-27
Identity = 22/35 (62.86%), Postives = 29/35 (82.86%), Query Frame = 1

Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            ++GG +EFD+ IA+PDMM  V  LGK+LGPRG+MP
Sbjct:  102 VQGGKIEFDRCIATPDMMPLVGRLGKVLGPRGMMP 136

[Close]

BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_RHIL3 (50S ribosomal protein L1 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.326e-27
Identity = 46/94 (48.94%), Postives = 63/94 (67.02%), Query Frame = 2

Query:  230 QNLREG---KKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502
            Q + EG    K Y L  AI ++K+ +  KF ET E    L +DP++ DQ +R  V+LP GTG++V+VAV A+G K DEAK AGAD+VG +DL+E
Sbjct:    7 QKINEGVDPTKLYALTLAIGMVKERAVAKFDETIEVSMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGAKADEAKAAGADIVGAEDLVE 100

HSP 2 Score: 51.9878 bits (123), Expect = 1.326e-27
Identity = 22/35 (62.86%), Postives = 29/35 (82.86%), Query Frame = 1

Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            ++GG +EFD+ IA+PDMM  V  LGK+LGPRG+MP
Sbjct:  102 VQGGKIEFDRCIATPDMMPLVGRLGKVLGPRGMMP 136

[Close]

BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_ALKOO (50S ribosomal protein L1 OS=Alkaliphilus oremlandii (strain OhILAs) GN=rplA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.327e-27
Identity = 48/106 (45.28%), Postives = 71/106 (66.98%), Query Frame = 2

Query:  206 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*KEDSW 523
            + K++ E   L +    YD K AI L K+ ++ KF ET EAH +L +D ++ DQQ+R  V LP GTGK+V++ V A+GEK  EA+ AGAD VGGD+L+ + + ++W
Sbjct:    4 KGKKYQEALKLVDKTNLYDPKEAIELAKKTATAKFDETVEAHIKLGVDSRHADQQVRGAVVLPHGTGKTVRILVFAKGEKAIEAEKAGADYVGGDELVAKIQGENW 109

HSP 2 Score: 43.8986 bits (102), Expect = 1.327e-27
Identity = 18/31 (58.06%), Postives = 25/31 (80.65%), Query Frame = 1

Query:  517 FMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            + EFD ++A+PDMM  V  LG++LGP+GLMP
Sbjct:  109 WFEFDVVVATPDMMGVVGRLGRVLGPKGLMP 139

[Close]

BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RK1_PHATR (50S ribosomal protein L1, chloroplastic OS=Phaeodactylum tricornutum GN=rpl1 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.327e-27
Identity = 46/82 (56.10%), Postives = 61/82 (74.39%), Query Frame = 2

Query:  260 DLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ 505
            ++  AI++LK+ ++TKF E+ E H  LNIDPKY DQQLR TV+LP G GK V +AVL   E F+EAK++G D+VG D+LI Q
Sbjct:   22 NIDEAIAVLKETATTKFVESVELHANLNIDPKYADQQLRTTVTLPNGIGKQVVIAVLTNEENFEEAKSSGGDIVGNDELIAQ 103

HSP 2 Score: 46.2098 bits (108), Expect = 1.327e-27
Identity = 21/35 (60.00%), Postives = 28/35 (80.00%), Query Frame = 1

Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            I  G + FD LIA+P+MM K+A LG++LGP+GLMP
Sbjct:  104 ITQGQINFDLLIATPNMMPKLAKLGRMLGPKGLMP 138

[Close]

BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_BACLD (50S ribosomal protein L1 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rplA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.327e-27
Identity = 48/100 (48.00%), Postives = 66/100 (66.00%), Query Frame = 2

Query:  206 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ 505
            + K+++E   L +  K YD+  AI L+K+ ++ KF  T EA FRL +DP+ NDQQ+R  V LP GTGK+ +V V A+GEK  EA+ AGAD VG  D I +
Sbjct:    4 KGKKYVEAAKLVDRTKAYDVNEAIELVKKTNTAKFDATVEAAFRLGVDPRKNDQQIRGAVVLPNGTGKTQRVLVFAKGEKAKEAEAAGADYVGDADYINK 103

HSP 2 Score: 47.3654 bits (111), Expect = 1.327e-27
Identity = 18/35 (51.43%), Postives = 29/35 (82.86%), Query Frame = 1

Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            I+ G+ +FD ++A+PDMM +V  +G++LGP+GLMP
Sbjct:  104 IQQGWFDFDVIVATPDMMGEVGKIGRVLGPKGLMP 138

[Close]

BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_CHLAB (50S ribosomal protein L1 OS=Chlamydophila abortus GN=rplA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.327e-27
Identity = 48/98 (48.98%), Postives = 64/98 (65.31%), Query Frame = 2

Query:  212 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ 505
            KR   I    +  K Y L+ AI +LKQ    +F +T +   +L IDPK +DQQ+R +VSLP GTGK++K+ V A GEK  EA +AGAD VG DDL+E+
Sbjct:    6 KRIRGILKSYDFSKSYSLQEAIDILKQCPPVRFDQTVDVSIKLGIDPKKSDQQIRGSVSLPHGTGKTLKILVFAAGEKAKEALDAGADFVGSDDLVEK 103

HSP 2 Score: 47.7506 bits (112), Expect = 1.327e-27
Identity = 20/35 (57.14%), Postives = 28/35 (80.00%), Query Frame = 1

Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            I+GG+++ D  +A+PDMM +V  LGK+LGPR LMP
Sbjct:  104 IRGGWVDCDVAVATPDMMREVGKLGKVLGPRNLMP 138

[Close]

BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_SILPO (50S ribosomal protein L1 OS=Silicibacter pomeroyi GN=rplA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.327e-27
Identity = 43/86 (50.00%), Postives = 62/86 (72.09%), Query Frame = 2

Query:  245 GKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502
            GK+E  ++ A++L+K  +S KF ET E    L +DP++ DQ +R  V LP GTGK+V+VAV A+G K +EA+ AGAD+VG +DL+E
Sbjct:   17 GKEELSVEQAVALIKSAASAKFDETVEIAMNLGVDPRHADQMVRGVVGLPNGTGKTVRVAVFARGPKAEEAQAAGADIVGAEDLME 102

HSP 2 Score: 50.8322 bits (120), Expect = 1.327e-27
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 1

Query:  502 TIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            TI+ G +EFD+ IA+PDMM  V  LGKILGPR LMP
Sbjct:  103 TIQSGKIEFDRCIATPDMMPVVGRLGKILGPRNLMP 138

[Close]

BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_CHLTB (50S ribosomal protein L1 OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.327e-27
Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = 2

Query:  212 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*K 511
            KR   IQ   +  K Y L  AI +LKQ  + +F +T +   +L IDP+ +DQQ+R +VSLP GTGK +++ V A G+K  EA  AGAD VG DDL+E+ K
Sbjct:    6 KRIRGIQETYDLAKSYSLGEAIDILKQCPTVRFDQTVDVSVKLGIDPRKSDQQVRGSVSLPHGTGKVLRILVFAAGDKAAEAIEAGADFVGSDDLVEKIK 105

HSP 2 Score: 51.9878 bits (123), Expect = 1.327e-27
Identity = 22/35 (62.86%), Postives = 29/35 (82.86%), Query Frame = 1

Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            IKGG+++FD  +A+PDMM +V  LGK+LGPR LMP
Sbjct:  104 IKGGWVDFDVAVATPDMMREVGKLGKVLGPRNLMP 138

[Close]

BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_CHLMU (50S ribosomal protein L1 OS=Chlamydia muridarum GN=rplA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.327e-27
Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = 2

Query:  212 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*K 511
            KR   IQ   +  K Y L  AI +LKQ  + +F +T +   +L IDP+ +DQQ+R +VSLP GTGK +++ V A G+K  EA  AGAD VG DDL+E+ K
Sbjct:    6 KRIRGIQEKYDFTKPYSLGEAIDILKQCPAVRFDQTVDVSVKLGIDPRKSDQQIRGSVSLPHGTGKVLRILVFAAGDKAAEAIEAGADFVGSDDLVEKIK 105

HSP 2 Score: 51.9878 bits (123), Expect = 1.327e-27
Identity = 22/35 (62.86%), Postives = 29/35 (82.86%), Query Frame = 1

Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            IKGG+++FD  +A+PDMM +V  LGK+LGPR LMP
Sbjct:  104 IKGGWVDFDVAVATPDMMREVGKLGKVLGPRNLMP 138

The following BLAST results are available for this feature:

BLAST of CX294939 vs. ExPASy Swiss-Prot

BLAST of CX294939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RL1_CHLT2	1.019e-27	47.00	50S ribosomal protein L1 OS=Chlamydia trachomatis ...	[more]
RL1_RHILW	1.326e-27	48.94	50S ribosomal protein L1 OS=Rhizobium leguminosaru...	[more]
RL1_RHIL3	1.326e-27	48.94	50S ribosomal protein L1 OS=Rhizobium leguminosaru...	[more]
RL1_ALKOO	1.327e-27	45.28	50S ribosomal protein L1 OS=Alkaliphilus oremlandi...	[more]
RK1_PHATR	1.327e-27	56.10	50S ribosomal protein L1, chloroplastic OS=Phaeoda...	[more]
RL1_BACLD	1.327e-27	48.00	50S ribosomal protein L1 OS=Bacillus licheniformis...	[more]
RL1_CHLAB	1.327e-27	48.98	50S ribosomal protein L1 OS=Chlamydophila abortus ...	[more]
RL1_SILPO	1.327e-27	50.00	50S ribosomal protein L1 OS=Silicibacter pomeroyi ...	[more]
RL1_CHLTB	1.327e-27	47.00	50S ribosomal protein L1 OS=Chlamydia trachomatis ...	[more]
RL1_CHLMU	1.327e-27	47.00	50S ribosomal protein L1 OS=Chlamydia muridarum GN...	[more]

Pages

Properties


Property Name	Value
Genbank description	C05057H01SK PhIFruit1 Citrus clementina cDNA clone C05057H01, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX294939 ID=CX294939; Name=CX294939; organism=Citrus clementina; type=EST; length=609bp
GAGACAGAACAAAAATGGGCTTCCTGGACACATGCTGGCGGCTGCTTCTG
CTGTCGAAGCTGATACTGACTTGGCCACTGACGATGTGGAGGACGATACT
CAGGGAGGTGCTGAAGGAGCAACTGCTACTGCTACTGCTACTGCTACTAT
TTCAACTAAGCCTAAGAAAGGCAAGGCTGCGTTGCCTCTCAAGAGAGACA
GGACTAGGTCTAAAAGATTCCTGGAAATTCAAAATTTGAGGGAAGGCAAG
AAAGAGTATGATTTGAAGACGGCAATATCTTTGTTGAAGCAGATGTCAAG
TACAAAGTTCACGGAAACAGCTGAAGCCCATTTTCGCCTCAACATTGATC
CCAAATACAATGATCAACAGCTTAGAGCAACAGTGAGTTTACCCAAGGGA
ACTGGAAAATCTGTTAAGGTGGCTGTTCTTGCTCAAGGTGAAAAGTTCGA
TGAAGCAAAAAATGCAGGAGCAGATTTGGTTGGTGGTGATGACTTGATTG
AACAATAAAAGGAGGATTCATGGAGTTCGACAAGCTAATTGCTTCACCAG
ATATGATGGTTAAGGTTGCCAGCCTAGGAAAAATTCTTGGACCACGGGGA
CTCATGCCA