CX294939

Overview
NameCX294939
Unique NameCX294939
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_PROMA (50S ribosomal protein L1 OS=Prochlorococcus marinus GN=rplA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.709e-31
Identity = 50/84 (59.52%), Postives = 64/84 (76.19%), Query Frame = 2
Query:  251 KEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502
            K Y    AI L+K+ ++ KF ET EAH RL IDPKY DQQ+R TVSLPKGTG+ V++AV+A+GEK  EA +AGADL G ++LI+
Sbjct:   18 KSYAPLEAIQLVKENANAKFDETIEAHIRLGIDPKYTDQQIRTTVSLPKGTGQKVRIAVIAKGEKVAEANSAGADLAGEEELID 101          

HSP 2 Score: 52.373 bits (124), Expect = 3.709e-31
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1
Query:  502 TIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            +I  G M FD LI++PDMM KVA LG++LGPRGLMP
Sbjct:  102 SISKGEMNFDLLISTPDMMPKVAKLGRVLGPRGLMP 137          
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_PROM2 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9215) GN=rplA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.709e-31
Identity = 50/98 (51.02%), Postives = 69/98 (70.41%), Query Frame = 2
Query:  209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502
            SKR   +    E +    L+ A+S++K+ ++ KF ET EAH RL IDPKY DQQLR TV+LP GTG+S+++AV+  GE   +AK+AGADL G +DL+E
Sbjct:    5 SKRMASLSTKIEDRIYAPLE-ALSIIKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALPHGTGQSIRIAVITSGENVSKAKSAGADLFGEEDLVE 101          

HSP 2 Score: 55.4546 bits (132), Expect = 3.709e-31
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 1
Query:  502 TIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            +I  G MEFD LIA+PDMM KVA LG++LGPRGLMP
Sbjct:  102 SINKGNMEFDLLIATPDMMPKVAKLGRVLGPRGLMP 137          
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_PROM9 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.830e-31
Identity = 46/77 (59.74%), Postives = 61/77 (79.22%), Query Frame = 2
Query:  272 AISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502
            A+S++K+ ++ KF ET EAH RL IDPKY DQQLR TV+LP GTG+S+K+AV+  GE   +AK+AGADL G +DL+E
Sbjct:   25 ALSIIKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALPHGTGQSIKIAVITSGENVSKAKSAGADLFGEEDLVE 101          

HSP 2 Score: 54.299 bits (129), Expect = 4.830e-31
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 1
Query:  502 TIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            +I  G M+FD LIA+PDMM KVA LG++LGPRGLMP
Sbjct:  102 SINKGNMDFDLLIATPDMMPKVAKLGRVLGPRGLMP 137          
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_PROM0 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.830e-31
Identity = 46/77 (59.74%), Postives = 60/77 (77.92%), Query Frame = 2
Query:  272 AISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502
            A+S++K+ ++ KF ET EAH RL IDPKY DQQLR TV+LP GTG+S+K+AV+  GE   +AK AGADL G +DL+E
Sbjct:   25 ALSIIKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALPHGTGQSIKIAVITSGENVSKAKAAGADLFGEEDLVE 101          

HSP 2 Score: 55.4546 bits (132), Expect = 4.830e-31
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 1
Query:  502 TIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            +I  G MEFD LIA+PDMM KVA LG++LGPRGLMP
Sbjct:  102 SINKGNMEFDLLIATPDMMPKVAKLGRVLGPRGLMP 137          
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_SYNSC (50S ribosomal protein L1 OS=Synechococcus sp. (strain CC9605) GN=rplA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.289e-31
Identity = 53/98 (54.08%), Postives = 69/98 (70.41%), Query Frame = 2
Query:  209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502
            SKR   +    E +    L+ AI+L+K  ++ KF ET EAH RL IDPKY DQQLR TV+LP GTG+SV++AV+ +GEK  EAK AGA+L G +DL+E
Sbjct:    5 SKRLASLAGKIEDRAYAPLE-AIALVKDNANAKFDETMEAHVRLGIDPKYTDQQLRTTVALPNGTGQSVRIAVVTRGEKVAEAKAAGAELAGEEDLVE 101          

HSP 2 Score: 54.299 bits (129), Expect = 6.289e-31
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 1
Query:  502 TIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            +I  G M+FD LIA+PDMM KVA LG++LGPRGLMP
Sbjct:  102 SISKGEMDFDLLIATPDMMPKVAKLGRVLGPRGLMP 137          
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_ACAM1 (50S ribosomal protein L1 OS=Acaryochloris marina (strain MBIC 11017) GN=rplA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 8.187e-31
Identity = 52/99 (52.53%), Postives = 73/99 (73.74%), Query Frame = 2
Query:  209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ 505
            S+R  E++   E +  Y+   A+ LL + ++ KF E+AEAH RL IDPKY DQQLR TV+LPKGTG+ V++AV+A+GEK  EA +AGAD+VG ++LI +
Sbjct:    6 SRRMRELKQQVEDRA-YEPLEALELLCKTATAKFPESAEAHIRLGIDPKYTDQQLRTTVALPKGTGQEVRIAVVARGEKVKEATDAGADVVGSEELITE 103          

HSP 2 Score: 51.9878 bits (123), Expect = 8.187e-31
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 1
Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            I+ G M+FD LIA+PDMM +VA +G+ILGPRGLMP
Sbjct:  104 IQQGRMDFDLLIATPDMMPQVAKVGRILGPRGLMP 138          
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RK1_PORYE (50S ribosomal protein L1, chloroplastic OS=Porphyra yezoensis GN=rpl1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 8.194e-31
Identity = 51/85 (60.00%), Postives = 66/85 (77.65%), Query Frame = 2
Query:  251 KEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ 505
            K Y +  A+S+LK  S+ KF ETAEAH  L ++PKY DQQLRATV LPKGTGK +KVAV+A+GEK  EA +AGAD+ G ++LI++
Sbjct:   18 KLYTINEAVSILKATSNAKFKETAEAHIALGLNPKYADQQLRATVILPKGTGKLIKVAVIAKGEKLTEAISAGADVSGSEELIDE 102          

HSP 2 Score: 50.0618 bits (118), Expect = 8.194e-31
Identity = 21/32 (65.62%), Postives = 28/32 (87.50%), Query Frame = 1
Query:  514 GFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            G ++FDKLIA+PD+M  +A LG++LGPRGLMP
Sbjct:  106 GRLDFDKLIATPDVMPLIAKLGRVLGPRGLMP 137          
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_SYNJA (50S ribosomal protein L1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.066e-30
Identity = 58/104 (55.77%), Postives = 74/104 (71.15%), Query Frame = 2
Query:  200 RTRSKRFLEIQNLREGKKE--YDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ 505
            R  SKR   +Q LRE  K   Y    A++L+K+ ++ KF E AE H RL IDPKY DQQLR TV LP+GTG+ ++VAV+A+GEK  EA+NAGAD VG +DLIE+
Sbjct:    3 RKLSKR---MQALREKVKPIAYPPAEALALMKETATAKFDEAAEVHIRLGIDPKYADQQLRTTVVLPRGTGQEIRVAVIARGEKVTEAQNAGADRVGFEDLIEE 103          

HSP 2 Score: 48.9062 bits (115), Expect = 1.066e-30
Identity = 21/32 (65.62%), Postives = 28/32 (87.50%), Query Frame = 1
Query:  514 GFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            G ++FD LIA+PD+M +VA LG++LGPRGLMP
Sbjct:  107 GVIDFDLLIATPDVMPQVAKLGRLLGPRGLMP 138          
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_SYNP2 (50S ribosomal protein L1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.066e-30
Identity = 49/84 (58.33%), Postives = 65/84 (77.38%), Query Frame = 2
Query:  251 KEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502
            + Y+   A++LLK+ ++ KF ETAEAH RL IDPKY DQQLR TV+ PKGTG+SV+VAV+  GE+   A+ +GADLVG ++LIE
Sbjct:   19 RAYEPLEALTLLKETATAKFDETAEAHIRLGIDPKYTDQQLRTTVAFPKGTGQSVRVAVITSGEQVKVAEESGADLVGSEELIE 102          

HSP 2 Score: 51.2174 bits (121), Expect = 1.066e-30
Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 1
Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            I+ G M+F+ LIA+PDMM KVA LG+ LGPRGLMP
Sbjct:  104 IQKGMMDFEVLIATPDMMPKVARLGRQLGPRGLMP 138          
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_PROM5 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.066e-30
Identity = 50/98 (51.02%), Postives = 69/98 (70.41%), Query Frame = 2
Query:  209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502
            SKR   +    E +    L+ A++++K+ ++ KF ET EAH RL IDPKY DQQLR TV+LP GTG+S+K+AV+  GE   +AK+AGADL G +DL+E
Sbjct:    5 SKRMTALSTKIEDRTYAPLE-ALAIIKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALPHGTGQSIKIAVITSGENVAKAKSAGADLFGEEDLVE 101          

HSP 2 Score: 54.299 bits (129), Expect = 1.066e-30
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 1
Query:  502 TIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            +I  G M+FD LIA+PDMM KVA LG++LGPRGLMP
Sbjct:  102 SINKGNMDFDLLIATPDMMPKVAKLGRVLGPRGLMP 137          
The following BLAST results are available for this feature:
BLAST of CX294939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_PROMA3.709e-3159.5250S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_PROM23.709e-3151.0250S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_PROM94.830e-3159.7450S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_PROM04.830e-3159.7450S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_SYNSC6.289e-3154.0850S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RL1_ACAM18.187e-3152.5350S ribosomal protein L1 OS=Acaryochloris marina (... [more]
RK1_PORYE8.194e-3160.0050S ribosomal protein L1, chloroplastic OS=Porphyr... [more]
RL1_SYNJA1.066e-3055.7750S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RL1_SYNP21.066e-3058.3350S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RL1_PROM51.066e-3051.0250S ribosomal protein L1 OS=Prochlorococcus marinu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05057H01SK PhIFruit1 Citrus clementina cDNA clone C05057H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294939 ID=CX294939; Name=CX294939; organism=Citrus clementina; type=EST; length=609bp
GAGACAGAACAAAAATGGGCTTCCTGGACACATGCTGGCGGCTGCTTCTG
CTGTCGAAGCTGATACTGACTTGGCCACTGACGATGTGGAGGACGATACT
CAGGGAGGTGCTGAAGGAGCAACTGCTACTGCTACTGCTACTGCTACTAT
TTCAACTAAGCCTAAGAAAGGCAAGGCTGCGTTGCCTCTCAAGAGAGACA
GGACTAGGTCTAAAAGATTCCTGGAAATTCAAAATTTGAGGGAAGGCAAG
AAAGAGTATGATTTGAAGACGGCAATATCTTTGTTGAAGCAGATGTCAAG
TACAAAGTTCACGGAAACAGCTGAAGCCCATTTTCGCCTCAACATTGATC
CCAAATACAATGATCAACAGCTTAGAGCAACAGTGAGTTTACCCAAGGGA
ACTGGAAAATCTGTTAAGGTGGCTGTTCTTGCTCAAGGTGAAAAGTTCGA
TGAAGCAAAAAATGCAGGAGCAGATTTGGTTGGTGGTGATGACTTGATTG
AACAATAAAAGGAGGATTCATGGAGTTCGACAAGCTAATTGCTTCACCAG
ATATGATGGTTAAGGTTGCCAGCCTAGGAAAAATTCTTGGACCACGGGGA
CTCATGCCA
back to top