CX294939
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_PROMA (50S ribosomal protein L1 OS=Prochlorococcus marinus GN=rplA PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 3.709e-31 Identity = 50/84 (59.52%), Postives = 64/84 (76.19%), Query Frame = 2 Query: 251 KEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502 K Y AI L+K+ ++ KF ET EAH RL IDPKY DQQ+R TVSLPKGTG+ V++AV+A+GEK EA +AGADL G ++LI+ Sbjct: 18 KSYAPLEAIQLVKENANAKFDETIEAHIRLGIDPKYTDQQIRTTVSLPKGTGQKVRIAVIAKGEKVAEANSAGADLAGEEELID 101 HSP 2 Score: 52.373 bits (124), Expect = 3.709e-31 Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1 Query: 502 TIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609 +I G M FD LI++PDMM KVA LG++LGPRGLMP Sbjct: 102 SISKGEMNFDLLISTPDMMPKVAKLGRVLGPRGLMP 137
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_PROM2 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9215) GN=rplA PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 3.709e-31 Identity = 50/98 (51.02%), Postives = 69/98 (70.41%), Query Frame = 2 Query: 209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502 SKR + E + L+ A+S++K+ ++ KF ET EAH RL IDPKY DQQLR TV+LP GTG+S+++AV+ GE +AK+AGADL G +DL+E Sbjct: 5 SKRMASLSTKIEDRIYAPLE-ALSIIKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALPHGTGQSIRIAVITSGENVSKAKSAGADLFGEEDLVE 101 HSP 2 Score: 55.4546 bits (132), Expect = 3.709e-31 Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 1 Query: 502 TIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609 +I G MEFD LIA+PDMM KVA LG++LGPRGLMP Sbjct: 102 SINKGNMEFDLLIATPDMMPKVAKLGRVLGPRGLMP 137
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_PROM9 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplA PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 4.830e-31 Identity = 46/77 (59.74%), Postives = 61/77 (79.22%), Query Frame = 2 Query: 272 AISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502 A+S++K+ ++ KF ET EAH RL IDPKY DQQLR TV+LP GTG+S+K+AV+ GE +AK+AGADL G +DL+E Sbjct: 25 ALSIIKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALPHGTGQSIKIAVITSGENVSKAKSAGADLFGEEDLVE 101 HSP 2 Score: 54.299 bits (129), Expect = 4.830e-31 Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 1 Query: 502 TIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609 +I G M+FD LIA+PDMM KVA LG++LGPRGLMP Sbjct: 102 SINKGNMDFDLLIATPDMMPKVAKLGRVLGPRGLMP 137
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_PROM0 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplA PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 4.830e-31 Identity = 46/77 (59.74%), Postives = 60/77 (77.92%), Query Frame = 2 Query: 272 AISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502 A+S++K+ ++ KF ET EAH RL IDPKY DQQLR TV+LP GTG+S+K+AV+ GE +AK AGADL G +DL+E Sbjct: 25 ALSIIKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALPHGTGQSIKIAVITSGENVSKAKAAGADLFGEEDLVE 101 HSP 2 Score: 55.4546 bits (132), Expect = 4.830e-31 Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 1 Query: 502 TIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609 +I G MEFD LIA+PDMM KVA LG++LGPRGLMP Sbjct: 102 SINKGNMEFDLLIATPDMMPKVAKLGRVLGPRGLMP 137
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_SYNSC (50S ribosomal protein L1 OS=Synechococcus sp. (strain CC9605) GN=rplA PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 6.289e-31 Identity = 53/98 (54.08%), Postives = 69/98 (70.41%), Query Frame = 2 Query: 209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502 SKR + E + L+ AI+L+K ++ KF ET EAH RL IDPKY DQQLR TV+LP GTG+SV++AV+ +GEK EAK AGA+L G +DL+E Sbjct: 5 SKRLASLAGKIEDRAYAPLE-AIALVKDNANAKFDETMEAHVRLGIDPKYTDQQLRTTVALPNGTGQSVRIAVVTRGEKVAEAKAAGAELAGEEDLVE 101 HSP 2 Score: 54.299 bits (129), Expect = 6.289e-31 Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 1 Query: 502 TIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609 +I G M+FD LIA+PDMM KVA LG++LGPRGLMP Sbjct: 102 SISKGEMDFDLLIATPDMMPKVAKLGRVLGPRGLMP 137
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_ACAM1 (50S ribosomal protein L1 OS=Acaryochloris marina (strain MBIC 11017) GN=rplA PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 8.187e-31 Identity = 52/99 (52.53%), Postives = 73/99 (73.74%), Query Frame = 2 Query: 209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ 505 S+R E++ E + Y+ A+ LL + ++ KF E+AEAH RL IDPKY DQQLR TV+LPKGTG+ V++AV+A+GEK EA +AGAD+VG ++LI + Sbjct: 6 SRRMRELKQQVEDRA-YEPLEALELLCKTATAKFPESAEAHIRLGIDPKYTDQQLRTTVALPKGTGQEVRIAVVARGEKVKEATDAGADVVGSEELITE 103 HSP 2 Score: 51.9878 bits (123), Expect = 8.187e-31 Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 1 Query: 505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609 I+ G M+FD LIA+PDMM +VA +G+ILGPRGLMP Sbjct: 104 IQQGRMDFDLLIATPDMMPQVAKVGRILGPRGLMP 138
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RK1_PORYE (50S ribosomal protein L1, chloroplastic OS=Porphyra yezoensis GN=rpl1 PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 8.194e-31 Identity = 51/85 (60.00%), Postives = 66/85 (77.65%), Query Frame = 2 Query: 251 KEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ 505 K Y + A+S+LK S+ KF ETAEAH L ++PKY DQQLRATV LPKGTGK +KVAV+A+GEK EA +AGAD+ G ++LI++ Sbjct: 18 KLYTINEAVSILKATSNAKFKETAEAHIALGLNPKYADQQLRATVILPKGTGKLIKVAVIAKGEKLTEAISAGADVSGSEELIDE 102 HSP 2 Score: 50.0618 bits (118), Expect = 8.194e-31 Identity = 21/32 (65.62%), Postives = 28/32 (87.50%), Query Frame = 1 Query: 514 GFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609 G ++FDKLIA+PD+M +A LG++LGPRGLMP Sbjct: 106 GRLDFDKLIATPDVMPLIAKLGRVLGPRGLMP 137
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_SYNJA (50S ribosomal protein L1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplA PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 1.066e-30 Identity = 58/104 (55.77%), Postives = 74/104 (71.15%), Query Frame = 2 Query: 200 RTRSKRFLEIQNLREGKKE--YDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ 505 R SKR +Q LRE K Y A++L+K+ ++ KF E AE H RL IDPKY DQQLR TV LP+GTG+ ++VAV+A+GEK EA+NAGAD VG +DLIE+ Sbjct: 3 RKLSKR---MQALREKVKPIAYPPAEALALMKETATAKFDEAAEVHIRLGIDPKYADQQLRTTVVLPRGTGQEIRVAVIARGEKVTEAQNAGADRVGFEDLIEE 103 HSP 2 Score: 48.9062 bits (115), Expect = 1.066e-30 Identity = 21/32 (65.62%), Postives = 28/32 (87.50%), Query Frame = 1 Query: 514 GFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609 G ++FD LIA+PD+M +VA LG++LGPRGLMP Sbjct: 107 GVIDFDLLIATPDVMPQVAKLGRLLGPRGLMP 138
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_SYNP2 (50S ribosomal protein L1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplA PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.066e-30 Identity = 49/84 (58.33%), Postives = 65/84 (77.38%), Query Frame = 2 Query: 251 KEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502 + Y+ A++LLK+ ++ KF ETAEAH RL IDPKY DQQLR TV+ PKGTG+SV+VAV+ GE+ A+ +GADLVG ++LIE Sbjct: 19 RAYEPLEALTLLKETATAKFDETAEAHIRLGIDPKYTDQQLRTTVAFPKGTGQSVRVAVITSGEQVKVAEESGADLVGSEELIE 102 HSP 2 Score: 51.2174 bits (121), Expect = 1.066e-30 Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 1 Query: 505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609 I+ G M+F+ LIA+PDMM KVA LG+ LGPRGLMP Sbjct: 104 IQKGMMDFEVLIATPDMMPKVARLGRQLGPRGLMP 138
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_PROM5 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplA PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.066e-30 Identity = 50/98 (51.02%), Postives = 69/98 (70.41%), Query Frame = 2 Query: 209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502 SKR + E + L+ A++++K+ ++ KF ET EAH RL IDPKY DQQLR TV+LP GTG+S+K+AV+ GE +AK+AGADL G +DL+E Sbjct: 5 SKRMTALSTKIEDRTYAPLE-ALAIIKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALPHGTGQSIKIAVITSGENVAKAKSAGADLFGEEDLVE 101 HSP 2 Score: 54.299 bits (129), Expect = 1.066e-30 Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 1 Query: 502 TIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609 +I G M+FD LIA+PDMM KVA LG++LGPRGLMP Sbjct: 102 SINKGNMDFDLLIATPDMMPKVAKLGRVLGPRGLMP 137 The following BLAST results are available for this feature:
BLAST of CX294939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX294939 ID=CX294939; Name=CX294939; organism=Citrus clementina; type=EST; length=609bpback to top |