CX294939 | Citrus Genome Database

Overview


Name	CX294939
Unique Name	CX294939
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	609

Libraries


Library Name	Type
PhIFruit1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_VIBVY (50S ribosomal protein L1 OS=Vibrio vulnificus (strain YJ016) GN=rplA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.637e-24
Identity = 42/102 (41.18%), Postives = 66/102 (64.71%), Query Frame = 2

Query:  209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*KE 514
            +KR   I+   +  +EY++  A++LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+ ++VAV AQG   + AK AGAD+VG +DL EQ K+
Sbjct:    5 TKRMRVIREKVDVTREYEINEAVALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRDIRVAVFAQGANAEAAKEAGADIVGMEDLAEQVKK 106

HSP 2 Score: 46.595 bits (109), Expect = 1.637e-24
Identity = 22/35 (62.86%), Postives = 25/35 (71.43%), Query Frame = 1

Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            +K G M FD ++ASPD M  V  LG ILGPRGLMP
Sbjct:  104 VKKGEMNFDVVVASPDAMRVVGQLGTILGPRGLMP 138

[Close]

BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_VIBVU (50S ribosomal protein L1 OS=Vibrio vulnificus GN=rplA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.637e-24
Identity = 42/102 (41.18%), Postives = 66/102 (64.71%), Query Frame = 2

Query:  209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*KE 514
            +KR   I+   +  +EY++  A++LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+ ++VAV AQG   + AK AGAD+VG +DL EQ K+
Sbjct:    5 TKRMRVIREKVDVTREYEINEAVALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRDIRVAVFAQGANAEAAKEAGADIVGMEDLAEQVKK 106

HSP 2 Score: 46.595 bits (109), Expect = 1.637e-24
Identity = 22/35 (62.86%), Postives = 25/35 (71.43%), Query Frame = 1

Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            +K G M FD ++ASPD M  V  LG ILGPRGLMP
Sbjct:  104 VKKGEMNFDVVVASPDAMRVVGQLGTILGPRGLMP 138

[Close]

BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_PHOLL (50S ribosomal protein L1 OS=Photorhabdus luminescens subsp. laumondii GN=rplA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.637e-24
Identity = 42/98 (42.86%), Postives = 62/98 (63.27%), Query Frame = 2

Query:  209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502
            +KR   I+   +  K+YD+  A+ LLK++++ KF E+ +    L ID + +DQ +R    LP GTG+SV+VAV  QG   + AK AGA+LVG +DL E
Sbjct:    5 TKRMRTIREKVDATKQYDINEAVVLLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVGMEDLAE 102

HSP 2 Score: 48.521 bits (114), Expect = 1.637e-24
Identity = 23/35 (65.71%), Postives = 27/35 (77.14%), Query Frame = 1

Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            +K G M+FD +IASPD M  V  LG+ILGPRGLMP
Sbjct:  104 VKKGEMDFDVVIASPDAMRVVGQLGQILGPRGLMP 138

[Close]

BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_DESPS (50S ribosomal protein L1 OS=Desulfotalea psychrophila GN=rplA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.637e-24
Identity = 41/100 (41.00%), Postives = 61/100 (61.00%), Query Frame = 2

Query:  206 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ 505
            R K +       + ++ Y L+ A+  +   S  KF ET +   +L +DP++ DQ +R++V LP GTGK  +V V A+G K  EA+ AGAD VGGDDL+E+
Sbjct:    4 RGKNYSNKSQSFDKQQVYTLEEAVGHVLATSYAKFDETFDIAIKLGVDPRHADQMIRSSVVLPHGTGKVTRVLVFAKGAKEAEAREAGADFVGGDDLVEK 103

HSP 2 Score: 51.9878 bits (123), Expect = 1.637e-24
Identity = 21/35 (60.00%), Postives = 29/35 (82.86%), Query Frame = 1

Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            I+GG++EFDK +A+PDMM  V  +G++LGPR LMP
Sbjct:  104 IQGGWLEFDKTVATPDMMGTVGKIGRVLGPRNLMP 138

[Close]

BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_PELTS (50S ribosomal protein L1 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rplA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.637e-24
Identity = 41/89 (46.07%), Postives = 59/89 (66.29%), Query Frame = 2

Query:  257 YDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*KEDSW 523
            YD   A  LLK+++  KF ET E   RL +DP++ DQQ+R  V LP GTGK+  V V A+G+K  EA+ AGAD VG +D++ + +++ W
Sbjct:   21 YDPAEAFELLKKVAPAKFDETVEVAVRLGVDPRHADQQVRGAVVLPHGTGKTRTVLVFAKGDKAREAEEAGADFVGAEDMVARIQQEGW 109

HSP 2 Score: 46.2098 bits (108), Expect = 1.637e-24
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 1

Query:  514 GFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            G++ FD  IA+PDMM  V  LG+ILGPRGLMP
Sbjct:  108 GWLGFDVAIATPDMMGMVGKLGRILGPRGLMP 139

[Close]

BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_NITEU (50S ribosomal protein L1 OS=Nitrosomonas europaea GN=rplA PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.637e-24
Identity = 47/101 (46.53%), Postives = 67/101 (66.34%), Query Frame = 2

Query:  209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*K 511
            SKR+ EI    +  + Y L  A++L+K+ +  KF E+ +    L ID + +DQ +R +V LP GTGKSV+VAV AQG+K  EA +AGAD+VG +DL E+ K
Sbjct:    5 SKRYREIVQKIDRSQLYSLVDALALVKETAVAKFDESVDIAINLGIDVRKSDQVVRGSVVLPSGTGKSVRVAVFAQGDKAKEALDAGADIVGFEDLAERVK 105

HSP 2 Score: 46.2098 bits (108), Expect = 1.637e-24
Identity = 22/35 (62.86%), Postives = 25/35 (71.43%), Query Frame = 1

Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            +K G + FD  IASPD M  V  LG+ILGPRGLMP
Sbjct:  104 VKAGEINFDLAIASPDAMRVVGQLGQILGPRGLMP 138

[Close]

BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_HERAR (50S ribosomal protein L1 OS=Herminiimonas arsenicoxydans GN=rplA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.637e-24
Identity = 45/101 (44.55%), Postives = 64/101 (63.37%), Query Frame = 2

Query:  209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*K 511
            SKR    +   +  K Y    A++L+K+ +S KF E+ +   +L +D K +DQ +R +V LP GTGK V+VAV A GEK ++AK AGAD+VG +DL E  K
Sbjct:    5 SKRVKAFKAKVDRTKAYPFDNALALIKECASAKFNESIDVSVQLGVDAKKSDQVVRGSVVLPAGTGKDVRVAVFATGEKAEQAKAAGADIVGMEDLAESIK 105

HSP 2 Score: 47.7506 bits (112), Expect = 1.637e-24
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 1

Query:  502 TIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            +IK G M FD +IASPD M  V +LG+ILGPRG+MP
Sbjct:  103 SIKAGNMPFDIVIASPDTMRIVGTLGQILGPRGMMP 138

[Close]

BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_POLSJ (50S ribosomal protein L1 OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=rplA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.637e-24
Identity = 47/101 (46.53%), Postives = 63/101 (62.38%), Query Frame = 2

Query:  209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*K 511
            +KR   I +  +  K Y L  AI L+K+ +  KF E+ +   +L ID K +DQ +R  V LP GTGK+ +VAV AQG K +EAK AGAD+VG DDL  + K
Sbjct:    5 TKRQKTIGDKIDSNKLYALSDAIGLVKEFAVAKFDESIDVAVQLGIDAKKSDQVVRGAVVLPNGTGKTKRVAVFAQGAKAEEAKAAGADIVGMDDLAAEIK 105

HSP 2 Score: 49.6766 bits (117), Expect = 1.637e-24
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 1

Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            IK G M+FD +IASPD M  V +LG+ILGPRGLMP
Sbjct:  104 IKAGKMDFDVVIASPDAMRIVGTLGQILGPRGLMP 138

[Close]

BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_LISW6 (50S ribosomal protein L1 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=rplA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.638e-24
Identity = 42/100 (42.00%), Postives = 60/100 (60.00%), Query Frame = 2

Query:  206 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ 505
            + K++ +     +  K Y  + A+ L K++   KF  T E  FRL +DPK  DQQ+R  V LP GTGK+ +V V A+GEK  EA+ AGAD VG  + +E+
Sbjct:    4 KGKKYQDALKQIDANKVYTAEEAVELAKKIDFAKFDATVEVAFRLGVDPKKADQQIRGAVVLPNGTGKTQRVLVFAKGEKAKEAEAAGADYVGESEFVEK 103

HSP 2 Score: 48.9062 bits (115), Expect = 1.638e-24
Identity = 20/35 (57.14%), Postives = 28/35 (80.00%), Query Frame = 1

Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            I  G+ EFD ++A+PDMM +V  LG++LGP+GLMP
Sbjct:  104 INQGWFEFDVIVATPDMMGEVGKLGRVLGPKGLMP 138

[Close]

BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_LISMH (50S ribosomal protein L1 OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=rplA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.638e-24
Identity = 42/100 (42.00%), Postives = 60/100 (60.00%), Query Frame = 2

Query:  206 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ 505
            + K++ +     +  K Y  + A+ L K++   KF  T E  FRL +DPK  DQQ+R  V LP GTGK+ +V V A+GEK  EA+ AGAD VG  + +E+
Sbjct:    4 KGKKYQDALKQIDANKVYTAEEAVELAKKIDFAKFDATVEVAFRLGVDPKKADQQIRGAVVLPNGTGKTQRVLVFAKGEKAKEAEAAGADYVGESEFVEK 103

HSP 2 Score: 48.9062 bits (115), Expect = 1.638e-24
Identity = 20/35 (57.14%), Postives = 28/35 (80.00%), Query Frame = 1

Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            I  G+ EFD ++A+PDMM +V  LG++LGP+GLMP
Sbjct:  104 INQGWFEFDVIVATPDMMGEVGKLGRVLGPKGLMP 138

The following BLAST results are available for this feature:

BLAST of CX294939 vs. ExPASy Swiss-Prot

BLAST of CX294939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RL1_VIBVY	1.637e-24	41.18	50S ribosomal protein L1 OS=Vibrio vulnificus (str...	[more]
RL1_VIBVU	1.637e-24	41.18	50S ribosomal protein L1 OS=Vibrio vulnificus GN=r...	[more]
RL1_PHOLL	1.637e-24	42.86	50S ribosomal protein L1 OS=Photorhabdus luminesce...	[more]
RL1_DESPS	1.637e-24	41.00	50S ribosomal protein L1 OS=Desulfotalea psychroph...	[more]
RL1_PELTS	1.637e-24	46.07	50S ribosomal protein L1 OS=Pelotomaculum thermopr...	[more]
RL1_NITEU	1.637e-24	46.53	50S ribosomal protein L1 OS=Nitrosomonas europaea ...	[more]
RL1_HERAR	1.637e-24	44.55	50S ribosomal protein L1 OS=Herminiimonas arsenico...	[more]
RL1_POLSJ	1.637e-24	46.53	50S ribosomal protein L1 OS=Polaromonas sp. (strai...	[more]
RL1_LISW6	1.638e-24	42.00	50S ribosomal protein L1 OS=Listeria welshimeri se...	[more]
RL1_LISMH	1.638e-24	42.00	50S ribosomal protein L1 OS=Listeria monocytogenes...	[more]

Pages

Properties


Property Name	Value
Genbank description	C05057H01SK PhIFruit1 Citrus clementina cDNA clone C05057H01, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX294939 ID=CX294939; Name=CX294939; organism=Citrus clementina; type=EST; length=609bp
GAGACAGAACAAAAATGGGCTTCCTGGACACATGCTGGCGGCTGCTTCTG
CTGTCGAAGCTGATACTGACTTGGCCACTGACGATGTGGAGGACGATACT
CAGGGAGGTGCTGAAGGAGCAACTGCTACTGCTACTGCTACTGCTACTAT
TTCAACTAAGCCTAAGAAAGGCAAGGCTGCGTTGCCTCTCAAGAGAGACA
GGACTAGGTCTAAAAGATTCCTGGAAATTCAAAATTTGAGGGAAGGCAAG
AAAGAGTATGATTTGAAGACGGCAATATCTTTGTTGAAGCAGATGTCAAG
TACAAAGTTCACGGAAACAGCTGAAGCCCATTTTCGCCTCAACATTGATC
CCAAATACAATGATCAACAGCTTAGAGCAACAGTGAGTTTACCCAAGGGA
ACTGGAAAATCTGTTAAGGTGGCTGTTCTTGCTCAAGGTGAAAAGTTCGA
TGAAGCAAAAAATGCAGGAGCAGATTTGGTTGGTGGTGATGACTTGATTG
AACAATAAAAGGAGGATTCATGGAGTTCGACAAGCTAATTGCTTCACCAG
ATATGATGGTTAAGGTTGCCAGCCTAGGAAAAATTCTTGGACCACGGGGA
CTCATGCCA