CX294939

Overview
NameCX294939
Unique NameCX294939
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_THEMA (50S ribosomal protein L1 OS=Thermotoga maritima GN=rplA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.295e-29
Identity = 50/105 (47.62%), Postives = 70/105 (66.67%), Query Frame = 2 
Query:  209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*KEDSW 523
            SKR+LE + L +  K YDL  AI L+K+ ++ KF ET E H +  ID +  +Q +R T+ LP GTGK VKV V A+GEK  EA  AGAD VG +DL+E+ +++ +
Sbjct:    5 SKRYLEARKLVDRTKYYDLDEAIELVKKTATAKFDETIELHIQTGIDYRKPEQHIRGTIVLPHGTGKEVKVLVFAKGEKAKEALEAGADYVGAEDLVEKIEKEGF 109

HSP 2 Score: 50.447 bits (119), Expect = 4.295e-29
Identity = 23/34 (67.65%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:  508 KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            K GF++FD  IA+PDMM  +  LGKILGPRGLMP
Sbjct:  106 KEGFLDFDVAIATPDMMRIIGRLGKILGPRGLMP 139
[Close]
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RK1_ODOSI (50S ribosomal protein L1, chloroplastic OS=Odontella sinensis GN=rpl1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.296e-29
Identity = 47/82 (57.32%), Postives = 61/82 (74.39%), Query Frame = 2 
Query:  260 DLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ 505
            +L+ AI++L++ ++ KFTET E H  LNIDPKY DQQLR TV+LP G GK++ +AVL     F EA+ AGAD VG DDLIE+
Sbjct:   22 NLEDAITILQETATAKFTETVELHANLNIDPKYADQQLRTTVTLPHGIGKTINIAVLTNDSNFTEAREAGADRVGSDDLIEE 103

HSP 2 Score: 49.2914 bits (116), Expect = 4.296e-29
Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            I  G + FD LIA+PDMM K+A LG++LGP+GLMP
Sbjct:  104 ISQGNISFDLLIATPDMMPKLAKLGRVLGPKGLMP 138
[Close]
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_BIFLI (50S ribosomal protein L1 OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=rplA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.296e-29
Identity = 49/98 (50.00%), Postives = 63/98 (64.29%), Query Frame = 2 
Query:  206 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLI 499
            RSK++ E     +    Y    AI+LLK M +  F +T EA FRL++DP+  DQ +R TV+LP GTGK+ KV V A+G K  EA  AGAD+VG DDLI
Sbjct:    4 RSKKYREAAERVDRNNLYTANEAIALLKSMPAYNFDQTVEAVFRLSVDPRKADQLVRGTVNLPHGTGKTAKVLVFARGPKATEATEAGADIVGDDDLI 101

HSP 2 Score: 55.8398 bits (133), Expect = 4.296e-29
Identity = 22/35 (62.86%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            ++GGF++FD ++A+PDMM KV  LG++LGPRGLMP
Sbjct:  104 VQGGFLDFDAVVATPDMMGKVGRLGRVLGPRGLMP 138
[Close]
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_CALS8 (50S ribosomal protein L1 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rplA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.595e-29
Identity = 50/107 (46.73%), Postives = 71/107 (66.36%), Query Frame = 2 
Query:  206 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*KEDSWS 526
            R K++ E   L +  K YD + AI L  + S  KF ET E H RLN+DP++ DQQ+R TV LP GTGK+V+V V A+G+K  EA+ AGAD VG ++L+ + + + W+
Sbjct:    3 RGKKYQEAAKLVDKTKLYDPEEAIDLALKTSYAKFDETVEVHVRLNVDPRHADQQVRGTVVLPNGTGKNVRVLVFAKGDKAKEAEEAGADYVGAEELVAKIQNEGWT 109

HSP 2 Score: 45.4394 bits (106), Expect = 5.595e-29
Identity = 20/32 (62.50%), Postives = 25/32 (78.12%), Query Frame = 1 
Query:  514 GFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            G+ +FD  IA+PDMM  V  LGK+LGP+GLMP
Sbjct:  107 GWTDFDVCIATPDMMGLVGRLGKVLGPKGLMP 138
[Close]
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_BRUSU (50S ribosomal protein L1 OS=Brucella suis GN=rplA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.280e-29
Identity = 47/98 (47.96%), Postives = 67/98 (68.37%), Query Frame = 2 
Query:  209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502
            SKR  +I+   +  K YDL  AI L+K+ +  KF ET E    L +DP++ DQ +R  V+LP GTG++V+VAV A+G+K +EAK AGAD+VG ++L E
Sbjct:    5 SKRINKIREGVDRNKLYDLSAAIGLVKERAVAKFDETVEIAMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGDKAEEAKKAGADIVGAEELFE 102

HSP 2 Score: 51.6026 bits (122), Expect = 7.280e-29
Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            + GG +EFD+ IA+PDMM  V  LGK+LGPRG+MP
Sbjct:  104 VNGGKIEFDRCIATPDMMPLVGRLGKVLGPRGMMP 138
[Close]
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_BRUSI (50S ribosomal protein L1 OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=rplA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.280e-29
Identity = 47/98 (47.96%), Postives = 67/98 (68.37%), Query Frame = 2 
Query:  209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502
            SKR  +I+   +  K YDL  AI L+K+ +  KF ET E    L +DP++ DQ +R  V+LP GTG++V+VAV A+G+K +EAK AGAD+VG ++L E
Sbjct:    5 SKRINKIREGVDRNKLYDLSAAIGLVKERAVAKFDETVEIAMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGDKAEEAKKAGADIVGAEELFE 102

HSP 2 Score: 51.6026 bits (122), Expect = 7.280e-29
Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            + GG +EFD+ IA+PDMM  V  LGK+LGPRG+MP
Sbjct:  104 VNGGKIEFDRCIATPDMMPLVGRLGKVLGPRGMMP 138
[Close]
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_BRUO2 (50S ribosomal protein L1 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=rplA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.280e-29
Identity = 47/98 (47.96%), Postives = 67/98 (68.37%), Query Frame = 2 
Query:  209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502
            SKR  +I+   +  K YDL  AI L+K+ +  KF ET E    L +DP++ DQ +R  V+LP GTG++V+VAV A+G+K +EAK AGAD+VG ++L E
Sbjct:    5 SKRINKIREGVDRNKLYDLSAAIGLVKERAVAKFDETVEIAMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGDKAEEAKKAGADIVGAEELFE 102

HSP 2 Score: 51.6026 bits (122), Expect = 7.280e-29
Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            + GG +EFD+ IA+PDMM  V  LGK+LGPRG+MP
Sbjct:  104 VNGGKIEFDRCIATPDMMPLVGRLGKVLGPRGMMP 138
[Close]
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_BRUMB (50S ribosomal protein L1 OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=rplA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.280e-29
Identity = 47/98 (47.96%), Postives = 67/98 (68.37%), Query Frame = 2 
Query:  209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502
            SKR  +I+   +  K YDL  AI L+K+ +  KF ET E    L +DP++ DQ +R  V+LP GTG++V+VAV A+G+K +EAK AGAD+VG ++L E
Sbjct:    5 SKRINKIREGVDRNKLYDLSAAIGLVKERAVAKFDETVEIAMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGDKAEEAKKAGADIVGAEELFE 102

HSP 2 Score: 51.6026 bits (122), Expect = 7.280e-29
Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            + GG +EFD+ IA+PDMM  V  LGK+LGPRG+MP
Sbjct:  104 VNGGKIEFDRCIATPDMMPLVGRLGKVLGPRGMMP 138
[Close]
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_BRUC2 (50S ribosomal protein L1 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rplA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.280e-29
Identity = 47/98 (47.96%), Postives = 67/98 (68.37%), Query Frame = 2 
Query:  209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502
            SKR  +I+   +  K YDL  AI L+K+ +  KF ET E    L +DP++ DQ +R  V+LP GTG++V+VAV A+G+K +EAK AGAD+VG ++L E
Sbjct:    5 SKRINKIREGVDRNKLYDLSAAIGLVKERAVAKFDETVEIAMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGDKAEEAKKAGADIVGAEELFE 102

HSP 2 Score: 51.6026 bits (122), Expect = 7.280e-29
Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            + GG +EFD+ IA+PDMM  V  LGK+LGPRG+MP
Sbjct:  104 VNGGKIEFDRCIATPDMMPLVGRLGKVLGPRGMMP 138
[Close]
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_BRUAB (50S ribosomal protein L1 OS=Brucella abortus GN=rplA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.280e-29
Identity = 47/98 (47.96%), Postives = 67/98 (68.37%), Query Frame = 2 
Query:  209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502
            SKR  +I+   +  K YDL  AI L+K+ +  KF ET E    L +DP++ DQ +R  V+LP GTG++V+VAV A+G+K +EAK AGAD+VG ++L E
Sbjct:    5 SKRINKIREGVDRNKLYDLSAAIGLVKERAVAKFDETVEIAMNLGVDPRHADQMVRGVVNLPNGTGRTVRVAVFARGDKAEEAKKAGADIVGAEELFE 102

HSP 2 Score: 51.6026 bits (122), Expect = 7.280e-29
Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            + GG +EFD+ IA+PDMM  V  LGK+LGPRG+MP
Sbjct:  104 VNGGKIEFDRCIATPDMMPLVGRLGKVLGPRGMMP 138
The following BLAST results are available for this feature:
BLAST of CX294939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_THEMA4.295e-2947.6250S ribosomal protein L1 OS=Thermotoga maritima GN... [more]
RK1_ODOSI4.296e-2957.3250S ribosomal protein L1, chloroplastic OS=Odontel... [more]
RL1_BIFLI4.296e-2950.0050S ribosomal protein L1 OS=Bifidobacterium longum... [more]
RL1_CALS85.595e-2946.7350S ribosomal protein L1 OS=Caldicellulosiruptor s... [more]
RL1_BRUSU7.280e-2947.9650S ribosomal protein L1 OS=Brucella suis GN=rplA ... [more]
RL1_BRUSI7.280e-2947.9650S ribosomal protein L1 OS=Brucella suis (strain ... [more]
RL1_BRUO27.280e-2947.9650S ribosomal protein L1 OS=Brucella ovis (strain ... [more]
RL1_BRUMB7.280e-2947.9650S ribosomal protein L1 OS=Brucella melitensis bi... [more]
RL1_BRUC27.280e-2947.9650S ribosomal protein L1 OS=Brucella canis (strain... [more]
RL1_BRUAB7.280e-2947.9650S ribosomal protein L1 OS=Brucella abortus GN=rp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05057H01SK PhIFruit1 Citrus clementina cDNA clone C05057H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294939 ID=CX294939; Name=CX294939; organism=Citrus clementina; type=EST; length=609bp
GAGACAGAACAAAAATGGGCTTCCTGGACACATGCTGGCGGCTGCTTCTG
CTGTCGAAGCTGATACTGACTTGGCCACTGACGATGTGGAGGACGATACT
CAGGGAGGTGCTGAAGGAGCAACTGCTACTGCTACTGCTACTGCTACTAT
TTCAACTAAGCCTAAGAAAGGCAAGGCTGCGTTGCCTCTCAAGAGAGACA
GGACTAGGTCTAAAAGATTCCTGGAAATTCAAAATTTGAGGGAAGGCAAG
AAAGAGTATGATTTGAAGACGGCAATATCTTTGTTGAAGCAGATGTCAAG
TACAAAGTTCACGGAAACAGCTGAAGCCCATTTTCGCCTCAACATTGATC
CCAAATACAATGATCAACAGCTTAGAGCAACAGTGAGTTTACCCAAGGGA
ACTGGAAAATCTGTTAAGGTGGCTGTTCTTGCTCAAGGTGAAAAGTTCGA
TGAAGCAAAAAATGCAGGAGCAGATTTGGTTGGTGGTGATGACTTGATTG
AACAATAAAAGGAGGATTCATGGAGTTCGACAAGCTAATTGCTTCACCAG
ATATGATGGTTAAGGTTGCCAGCCTAGGAAAAATTCTTGGACCACGGGGA
CTCATGCCA
back to top