CX294939

Overview
NameCX294939
Unique NameCX294939
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15033 contig Ccv1_Contig15033:319..928. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_SOLUE (50S ribosomal protein L1 OS=Solibacter usitatus (strain Ellin6076) GN=rplA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.606e-28
Identity = 47/92 (51.09%), Postives = 64/92 (69.57%), Query Frame = 2 
Query:  251 KEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*KEDSWS 526
            KEY L+ AI L+K++   KF ET E H RL +DPK+ DQ +R TV +P G GKS KV V+A G+K  EA  AGAD VGG+D++ + + +SW+
Sbjct:   19 KEYQLEEAIPLIKKIKFAKFDETVEVHMRLGVDPKHADQMVRGTVLMPNGLGKSKKVLVIASGDKQREATEAGADFVGGEDMVNKIQSESWT 110

HSP 2 Score: 45.4394 bits (106), Expect = 1.606e-28
Identity = 19/29 (65.52%), Postives = 24/29 (82.76%), Query Frame = 1 
Query:  523 EFDKLIASPDMMVKVASLGKILGPRGLMP 609
            ++D +IA+PDMM  V  LGK+LGPRGLMP
Sbjct:  111 DYDAVIATPDMMRSVGKLGKVLGPRGLMP 139
[Close]
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_DEIDV (50S ribosomal protein L1 OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=rplA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.607e-28
Identity = 46/98 (46.94%), Postives = 70/98 (71.43%), Query Frame = 2 
Query:  212 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ 505
            KR+  +    +  K+Y +  A +L+K++++ KF ET E HFRL IDP+ +DQ +R TV+LP GTG++V+VAV+ +GE    A+ AGAD+VG D+LIE+
Sbjct:    6 KRYRALIEKVDRNKQYTIDEAAALVKELATAKFDETVEVHFRLGIDPRKSDQNVRGTVALPHGTGRTVRVAVITKGENVAAAEAAGADVVGSDELIER 103

HSP 2 Score: 48.521 bits (114), Expect = 1.607e-28
Identity = 22/36 (61.11%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:  505 IKGGFMEFDKLIASPDMMVKVA-SLGKILGPRGLMP 609
            I GGFMEFD ++A+PDMM  V   L ++LGPRGL+P
Sbjct:  104 IAGGFMEFDAVVATPDMMAAVGQKLARLLGPRGLLP 139
[Close]
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_HELPY (50S ribosomal protein L1 OS=Helicobacter pylori GN=rplA PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.607e-28
Identity = 51/100 (51.00%), Postives = 67/100 (67.00%), Query Frame = 2 
Query:  212 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*K 511
            K F +IQN     K Y ++  + ++K ++S KF ET E   RL +DP++ DQ +R  V LP GTGK V+VAV A+  K DEAKNAGAD+VGGDDL E+ K
Sbjct:   11 KLFSKIQN----DKAYGVEQGVEVVKSLASAKFDETVEVALRLGVDPRHADQMVRGAVVLPHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEIK 106

HSP 2 Score: 48.9062 bits (115), Expect = 1.607e-28
Identity = 21/35 (60.00%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            IK G ++FD +IA+PDMM  V  +G+ILGP+GLMP
Sbjct:  105 IKNGRIDFDMVIATPDMMAVVGKVGRILGPKGLMP 139
[Close]
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_HELPS (50S ribosomal protein L1 OS=Helicobacter pylori (strain Shi470) GN=rplA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.607e-28
Identity = 51/100 (51.00%), Postives = 67/100 (67.00%), Query Frame = 2 
Query:  212 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*K 511
            K F +IQN     K Y ++  + ++K ++S KF ET E   RL +DP++ DQ +R  V LP GTGK V+VAV A+  K DEAKNAGAD+VGGDDL E+ K
Sbjct:   11 KLFSKIQN----DKAYGVEQGVEVVKSLASAKFDETVEVALRLGVDPRHADQMVRGAVVLPHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEIK 106

HSP 2 Score: 48.9062 bits (115), Expect = 1.607e-28
Identity = 21/35 (60.00%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            IK G ++FD +IA+PDMM  V  +G+ILGP+GLMP
Sbjct:  105 IKNGRIDFDMVIATPDMMAVVGKVGRILGPKGLMP 139
[Close]
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_HELPH (50S ribosomal protein L1 OS=Helicobacter pylori (strain HPAG1) GN=rplA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.607e-28
Identity = 51/100 (51.00%), Postives = 67/100 (67.00%), Query Frame = 2 
Query:  212 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*K 511
            K F +IQN     K Y ++  + ++K ++S KF ET E   RL +DP++ DQ +R  V LP GTGK V+VAV A+  K DEAKNAGAD+VGGDDL E+ K
Sbjct:   11 KLFSKIQN----DKAYGVEQGVEVVKSLASAKFDETVEVALRLGVDPRHADQMVRGAVVLPHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEIK 106

HSP 2 Score: 48.9062 bits (115), Expect = 1.607e-28
Identity = 21/35 (60.00%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            IK G ++FD +IA+PDMM  V  +G+ILGP+GLMP
Sbjct:  105 IKNGRIDFDMVIATPDMMAVVGKVGRILGPKGLMP 139
[Close]
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_HELPG (50S ribosomal protein L1 OS=Helicobacter pylori (strain G27) GN=rplA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.607e-28
Identity = 51/100 (51.00%), Postives = 67/100 (67.00%), Query Frame = 2 
Query:  212 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*K 511
            K F +IQN     K Y ++  + ++K ++S KF ET E   RL +DP++ DQ +R  V LP GTGK V+VAV A+  K DEAKNAGAD+VGGDDL E+ K
Sbjct:   11 KLFSKIQN----DKAYGVEQGVEVVKSLASAKFDETVEVALRLGVDPRHADQMVRGAVVLPHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEIK 106

HSP 2 Score: 48.9062 bits (115), Expect = 1.607e-28
Identity = 21/35 (60.00%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            IK G ++FD +IA+PDMM  V  +G+ILGP+GLMP
Sbjct:  105 IKNGRIDFDMVIATPDMMAVVGKVGRILGPKGLMP 139
[Close]
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_HELP2 (50S ribosomal protein L1 OS=Helicobacter pylori (strain P12) GN=rplA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.607e-28
Identity = 51/100 (51.00%), Postives = 67/100 (67.00%), Query Frame = 2 
Query:  212 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*K 511
            K F +IQN     K Y ++  + ++K ++S KF ET E   RL +DP++ DQ +R  V LP GTGK V+VAV A+  K DEAKNAGAD+VGGDDL E+ K
Sbjct:   11 KLFSKIQN----DKAYGVEQGVEVVKSLASAKFDETVEVALRLGVDPRHADQMVRGAVVLPHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEIK 106

HSP 2 Score: 48.9062 bits (115), Expect = 1.607e-28
Identity = 21/35 (60.00%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            IK G ++FD +IA+PDMM  V  +G+ILGP+GLMP
Sbjct:  105 IKNGRIDFDMVIATPDMMAVVGKVGRILGPKGLMP 139
[Close]
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RK1_CYAME (50S ribosomal protein L1, chloroplastic OS=Cyanidioschyzon merolae GN=rpl1 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.608e-28
Identity = 53/100 (53.00%), Postives = 70/100 (70.00%), Query Frame = 2 
Query:  206 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ 505
            RSKR+  + +L E K  Y  + A+ LLK++++ KF ETAEAH RLN+DPKY DQQ+RATV LP GTGK++++AV+ +     E    GADLVG DDL  Q
Sbjct:    3 RSKRYQSLCSLIEPKL-YSPQEALKLLKKLATAKFVETAEAHIRLNLDPKYTDQQIRATVVLPHGTGKAIRIAVITKQSSHIE----GADLVGSDDLCAQ 97

HSP 2 Score: 47.7506 bits (112), Expect = 1.608e-28
Identity = 23/35 (65.71%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            I    + FD LIA+PDMM  +A LGKILGPRGLMP
Sbjct:   98 IAQSIINFDCLIATPDMMPTLAKLGKILGPRGLMP 132
[Close]
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_DICTD (50S ribosomal protein L1 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rplA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.090e-28
Identity = 52/106 (49.06%), Postives = 72/106 (67.92%), Query Frame = 2 
Query:  206 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*KEDSW 523
            R KR+ ++ +L E  + Y  K A+SL+K++++ KF ET     RL +DP++ DQQ+R TV LP GTGK  KV V A+GEK  EA+ AGAD VGG+DL++Q  E  W
Sbjct:    4 RGKRYQQLLSLIEKGRLYSPKEAVSLVKKLATAKFDETINLAVRLGVDPRHADQQVRGTVVLPYGTGKEKKVLVFAEGEKAQEAREAGADYVGGEDLVKQ-IESGW 108

HSP 2 Score: 44.2838 bits (103), Expect = 2.090e-28
Identity = 23/38 (60.53%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:  505 IKGGFMEFDKLIASPDMM--VKVAS-LGKILGPRGLMP 609
            I+ G+++FD  IA+PD+M  +K+ S LGKILGPRGLMP
Sbjct:  104 IESGWLDFDVAIATPDIMGTLKIPSRLGKILGPRGLMP 141
[Close]
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_PARUW (50S ribosomal protein L1 OS=Protochlamydia amoebophila (strain UWE25) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.091e-28
Identity = 45/99 (45.45%), Postives = 64/99 (64.65%), Query Frame = 2 
Query:  209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ 505
            SKR  EI    +  K Y ++ AI +LK+    KF +T E   +L +DP+ +DQ +R TVSLP GTGK++K+ V A+G+K  EA  AGAD  G D+L+E+
Sbjct:    5 SKRIREIAKSLDAAKAYTIREAIDILKKCPPVKFDQTVEVSLKLGVDPRRSDQSVRGTVSLPNGTGKTMKILVFAKGDKVKEALEAGADYAGHDELLEK 103

HSP 2 Score: 52.373 bits (124), Expect = 2.091e-28
Identity = 21/35 (60.00%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            + GG+ +FD ++A+PDMM +V  LGK+LGPRGLMP
Sbjct:  104 VNGGWTDFDAVVATPDMMREVGKLGKVLGPRGLMP 138
The following BLAST results are available for this feature:
BLAST of CX294939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_SOLUE1.606e-2851.0950S ribosomal protein L1 OS=Solibacter usitatus (s... [more]
RL1_DEIDV1.607e-2846.9450S ribosomal protein L1 OS=Deinococcus deserti (s... [more]
RL1_HELPY1.607e-2851.0050S ribosomal protein L1 OS=Helicobacter pylori GN... [more]
RL1_HELPS1.607e-2851.0050S ribosomal protein L1 OS=Helicobacter pylori (s... [more]
RL1_HELPH1.607e-2851.0050S ribosomal protein L1 OS=Helicobacter pylori (s... [more]
RL1_HELPG1.607e-2851.0050S ribosomal protein L1 OS=Helicobacter pylori (s... [more]
RL1_HELP21.607e-2851.0050S ribosomal protein L1 OS=Helicobacter pylori (s... [more]
RK1_CYAME1.608e-2853.0050S ribosomal protein L1, chloroplastic OS=Cyanidi... [more]
RL1_DICTD2.090e-2849.0650S ribosomal protein L1 OS=Dictyoglomus turgidum ... [more]
RL1_PARUW2.091e-2845.4550S ribosomal protein L1 OS=Protochlamydia amoebop... [more]

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Properties
Property NameValue
Genbank descriptionC05057H01SK PhIFruit1 Citrus clementina cDNA clone C05057H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294939 ID=CX294939; Name=CX294939; organism=Citrus clementina; type=EST; length=609bp
GAGACAGAACAAAAATGGGCTTCCTGGACACATGCTGGCGGCTGCTTCTG
CTGTCGAAGCTGATACTGACTTGGCCACTGACGATGTGGAGGACGATACT
CAGGGAGGTGCTGAAGGAGCAACTGCTACTGCTACTGCTACTGCTACTAT
TTCAACTAAGCCTAAGAAAGGCAAGGCTGCGTTGCCTCTCAAGAGAGACA
GGACTAGGTCTAAAAGATTCCTGGAAATTCAAAATTTGAGGGAAGGCAAG
AAAGAGTATGATTTGAAGACGGCAATATCTTTGTTGAAGCAGATGTCAAG
TACAAAGTTCACGGAAACAGCTGAAGCCCATTTTCGCCTCAACATTGATC
CCAAATACAATGATCAACAGCTTAGAGCAACAGTGAGTTTACCCAAGGGA
ACTGGAAAATCTGTTAAGGTGGCTGTTCTTGCTCAAGGTGAAAAGTTCGA
TGAAGCAAAAAATGCAGGAGCAGATTTGGTTGGTGGTGATGACTTGATTG
AACAATAAAAGGAGGATTCATGGAGTTCGACAAGCTAATTGCTTCACCAG
ATATGATGGTTAAGGTTGCCAGCCTAGGAAAAATTCTTGGACCACGGGGA
CTCATGCCA
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