CX294945

Overview
NameCX294945
Unique NameCX294945
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length602
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294945_ssr24 microsatellite CX294945_ssr24:24..37. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14817 contig Ccv1_Contig14817:1..597. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294945 vs. ExPASy Swiss-Prot
Match: RL18A_MOUSE (60S ribosomal protein L18a OS=Mus musculus GN=Rpl18a PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.546e-46
Identity = 86/165 (52.12%), Postives = 118/165 (71.52%), Query Frame = 1
Query:  100 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSXIKFPLVFRKVRPPSRKLRTTYKAN 594
            +Y+VVGR LPT     P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI+K   I A  C+R + KQFH+S IKFPL  R +R   +   TT + N
Sbjct:    9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPN 173          
BLAST of CX294945 vs. ExPASy Swiss-Prot
Match: RL18A_DANRE (60S ribosomal protein L18a OS=Danio rerio GN=rpl18a PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.347e-45
Identity = 84/165 (50.91%), Postives = 119/165 (72.12%), Query Frame = 1
Query:  100 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSXIKFPLVFRKVRPPSRKLRTTYKAN 594
            +Y+VVGR LP+  +  P +YRM+++A N V AKS+FWYF+ +L+K+KK++G+++    +FEK+P K+KN+GIWLRY SR+G HNMY+EYRD T +GAV Q Y +M +RHR R+  IQI+K   I A  C+R + KQFH+S IKFPL  R +R   +   TT + N
Sbjct:    9 EYKVVGRLLPSVKNPAPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKASGEIVYCGLVFEKSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQIMKVQVIAANKCRRPAIKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPN 173          
BLAST of CX294945 vs. ExPASy Swiss-Prot
Match: RL18A_CAEEL (60S ribosomal protein L18a OS=Caenorhabditis elegans GN=rpl-20 PE=2 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 1.347e-45
Identity = 82/166 (49.40%), Postives = 121/166 (72.89%), Query Frame = 1
Query:   97 HQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSXIKFPLVFRKVRPPSRKLRTTYKAN 594
            ++Y VVGR +PTE +    I++M+++ATN V AKS+FWYF+  L++VKK+NG++L+I ++FEKNP  +KNYG+WL+Y SRTG+HNMY+EYRDTT+ GAV Q Y +M +RHR ++  I I+K  T+ A+  KR   K FH++ I+FPL  R  +  +  + TT + N
Sbjct:   11 NEYVVVGRKIPTEKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGEILSIKQVFEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQADRIHILKVQTVKAEDTKRAGIKMFHDAKIRFPLPHRVTKRKNLSVFTTARQN 176          
BLAST of CX294945 vs. ExPASy Swiss-Prot
Match: RL18A_ICTPU (60S ribosomal protein L18a OS=Ictalurus punctatus GN=rpl18a PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.541e-44
Identity = 83/167 (49.70%), Postives = 118/167 (70.66%), Query Frame = 1
Query:  100 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSXIKFPLVFRKVRPPSRKLRTTYKANRP 600
            +Y+VVGR LP+  +  P +YRM+++A N V AKS+FWYF+ +L+K+KK+NG+ +    + E++P K+KN+GIWLRY SR+G HNMY+EYRD T +GAV Q Y +M +RHR R+  IQI+K   I A  C+R + KQFH+S IKFPL  R +R   R+ +  +   RP
Sbjct:    9 EYKVVGRLLPSAKNPTPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKANGETVYCGLVHEQSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQIMKVQVIAANKCRRAAIKQFHDSKIKFPLPHRVLR---RQHKPRFTTRRP 172          
BLAST of CX294945 vs. ExPASy Swiss-Prot
Match: RL20_YEAST (60S ribosomal protein L20 OS=Saccharomyces cerevisiae GN=RPL20A PE=1 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 6.259e-43
Identity = 86/170 (50.59%), Postives = 119/170 (70.00%), Query Frame = 1
Query:   94 FHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKL-CKRESTKQFHNSXIKFPLVFRKVRPPSRKLRTTYKANRP 600
            F +YQV+GR LPTES   PK++RM+++A+NEV AKS++WYFL+KL KVKK++G++++IN+I E +PTK+KN+G+W+RY SR+G HNMYKE RD +   AVE +Y +MA+RHR R   I I+K A I      KR+  KQF    +KFPL  R      +K   T+   RP
Sbjct:    4 FKEYQVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHKVKKASGEIVSINQINEAHPTKVKNFGVWVRYDSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIHILKVAEIEKTADVKRQYVKQFLTKDLKFPLPHR-----VQKSTKTFSYKRP 168          
BLAST of CX294945 vs. ExPASy Swiss-Prot
Match: RL18A_SALSA (60S ribosomal protein L18a OS=Salmo salar GN=rpl18a PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.057e-42
Identity = 80/165 (48.48%), Postives = 112/165 (67.88%), Query Frame = 1
Query:  100 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSXIKFPLVFRKVRPPSRKLRTTYKAN 594
            +Y+VVGR LP+  +  P +YRM+++A N V AKS+FWYF+ +L+K+KK+NG+ +    + EK P K+KN+G+WLR  SR+G HNMY+EYRD T + AV Q Y +M +RHR R+  I I+K   I A  C+R + KQFH+S IKFPL  R +R       TT + N
Sbjct:    9 EYKVVGRLLPSVKNPTPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKANGETVYCGLVHEKTPLKVKNFGVWLRNDSRSGTHNMYREYRDLTTSAAVTQCYRDMGARHRARAHSIHIMKVQEIAANKCRRPAIKQFHDSKIKFPLPHRVLRRQHNPRFTTKRPN 173          
BLAST of CX294945 vs. ExPASy Swiss-Prot
Match: RL20_SCHPO (60S ribosomal protein L20 OS=Schizosaccharomyces pombe GN=rpl20a PE=1 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 3.434e-41
Identity = 83/168 (49.40%), Postives = 113/168 (67.26%), Query Frame = 1
Query:  100 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKL-CKRESTKQFHNSXIKFPLVFRKVRPPSRKLRTTYKANRP 600
            +YQVVGR +PTE +  PK++RM+L+A NE  AKS++WYFL+ + KVKK+ G+++AINEI E  P K K +GIW+RY SR+G HNMYKE+RDTT  GAVE MY +MA+RHR R   I+I+K   +  K   +R   KQ  N  +KFPL  R+        +  +  +RP
Sbjct:    5 EYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKVFAPHRP 172          
The following BLAST results are available for this feature:
BLAST of CX294945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RL18A_MOUSE3.546e-4652.1260S ribosomal protein L18a OS=Mus musculus GN=Rpl1... [more]
RL18A_DANRE1.347e-4550.9160S ribosomal protein L18a OS=Danio rerio GN=rpl18... [more]
RL18A_CAEEL1.347e-4549.4060S ribosomal protein L18a OS=Caenorhabditis elega... [more]
RL18A_ICTPU2.541e-4449.7060S ribosomal protein L18a OS=Ictalurus punctatus ... [more]
RL20_YEAST6.259e-4350.5960S ribosomal protein L20 OS=Saccharomyces cerevis... [more]
RL18A_SALSA4.057e-4248.4860S ribosomal protein L18a OS=Salmo salar GN=rpl18... [more]
RL20_SCHPO3.434e-4149.4060S ribosomal protein L20 OS=Schizosaccharomyces p... [more]

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Properties
Property NameValue
Genbank descriptionC05057H08SK PhIFruit1 Citrus clementina cDNA clone C05057H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294945 ID=CX294945; Name=CX294945; organism=Citrus clementina; type=EST; length=602bp
CTCGTGCCGAATTCGGCACGAGGGAGAGAGAGAGAGAGTTACGCTGCGGA
GATCGTCACATCTTGTATTTCCTCGAAAATGGTCACTTTCAGGTTTCACC
AGTATCAGGTTGTTGGGAGAGCTCTTCCAACTGAGTCCGATGAGCATCCT
AAGATTTACAGGATGAAGTTGTGGGCCACGAATGAGGTTCGAGCCAAGTC
CAAGTTCTGGTACTTTCTTAGAAAGCTCAAGAAGGTCAAGAAGAGTAATG
GTCAAATGCTTGCCATTAACGAGATTTTTGAGAAGAACCCAACCAAGATC
AAGAACTATGGCATCTGGTTGCGTTATCAGAGTCGAACTGGTTATCACAA
TATGTACAAGGAGTACCGTGATACCACTCTGAACGGGGCTGTGGAGCAGA
TGTACACTGAGATGGCTTCTCGCCATAGGGTCAGGTCTCCTTGCATTCAA
ATTATCAAGACTGCTACCATCCCTGCGAAGCTATGCAAGAGAGAAAGCAC
CAAGCAGTTCCACAATTCANAAATCAAGTTTCCGTTGGTGTTCAGGAAGG
TGAGACCACCAAGCAGGAAGCTGAGGACCACATACAAGGCAAACAGGCCT
AA
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