CX294948

Overview
NameCX294948
Unique NameCX294948
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX294948 vs. ExPASy Swiss-Prot
Match: AGO12_ORYSJ (Protein argonaute 12 OS=Oryza sativa subsp. japonica GN=AGO12 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.603e-11
Identity = 40/94 (42.55%), Postives = 53/94 (56.38%), Query Frame = 1 
Query:   16 HEDVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFDDLSETSSSQGGMTSAGPVPVPQLPRLQEKVCNSMFFC 297
            H  VL DE GF +D LQ L ++LSY Y R T A+S+V P  YAHL A +   +M+ D+ S+  SS    T       P LP ++E V   MF+C
Sbjct:  958 HYHVLLDENGFKADTLQTLTYNLSYTYARCTRAVSIVPPAYYAHLGAFRARYYME-DEHSDQGSSSSVTTRTDRSTKP-LPEIKENVKRFMFYC 1049
[Close]
BLAST of CX294948 vs. ExPASy Swiss-Prot
Match: AGO14_ORYSJ (Protein argonaute 14 OS=Oryza sativa subsp. japonica GN=AGO14 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 41/98 (41.84%), Postives = 58/98 (59.18%), Query Frame = 1 
Query:   16 HEDVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFDDLSETSS--SQGGMTSAG--PVPVPQLPRLQEKVCNSMFFC 297
            H  VL DE  FS+D+LQ L ++L Y Y R T ++SVV P  YAHLAA +   + +   +   SS  S G   +AG  P  V +LP+++E V + MF+C
Sbjct:  955 HYHVLHDENRFSADQLQMLTYNLCYTYARCTRSVSVVPPAYYAHLAAFRARYYDEPPAMDGASSVGSGGNQAAAGGQPPAVRRLPQIKENVKDVMFYC 1052
The following BLAST results are available for this feature:
BLAST of CX294948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
AGO12_ORYSJ1.603e-1142.55Protein argonaute 12 OS=Oryza sativa subsp. japoni... [more]
AGO14_ORYSJ4.663e-1141.84Protein argonaute 14 OS=Oryza sativa subsp. japoni... [more]

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Properties
Property NameValue
Genbank descriptionC05057H11SK PhIFruit1 Citrus clementina cDNA clone C05057H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294948 ID=CX294948; Name=CX294948; organism=Citrus clementina; type=EST; length=678bp
CTCGTGCCGAATCGGCACGAGGACGTTCTATTTGATGAAATTGGCTTTTC
AAGTGATGAGCTGCAGGAACTAGTGCACTCACTTTCTTATGTGTACCAGA
GAAGCACTACAGCCATTTCTGTAGTTGCTCCAATTTGCTATGCCCACTTG
GCAGCAAGCCAGGTAGGATCATTCATGAAGTTTGACGACTTATCAGAGAC
ATCTTCTAGCCAGGGTGGGATGACATCTGCTGGACCTGTTCCTGTCCCCC
AGCTGCCTAGACTGCAGGAGAAAGTGTGCAATTCAATGTTCTTCTGTTGA
GACACTTGTGTGGCTTCTACCGTCAATCAGAATCCTATCAAAGTAGTTTG
TATATAGTTAGCCTTTTGGTTTTCATCTGGACCATCCAGTGGCAAAGGTG
TCTAGAACTTGTAGTGATGCCTTGAAAATCTCTGCTATTTAATTTTGGGT
CTAGAAACAGAAAGTGCCCTGTGCCTTTGTTTTTGTGGTGATTACTGGTG
TTGTTGACTCTTGCCAGTCCCATGCATTCGCCAGTCTCTCTATTTCCCCA
GACAGCAATGGGCTGTTAAACTGTTATTTTGATGGATTCAGGCATTTGGG
TATCGGAAATTGGAATGATTGGCATGTTTTTAGTAGCACTTTGTGGCCCT
TTTCGTATTGCAATATTGACATGCCTTT
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