CX294957

Overview
NameCX294957
Unique NameCX294957
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294957_ssr209 microsatellite CX294957_ssr209:209..220. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5796 contig Ccv1_Contig5796:63..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3PA_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Chlamydomonas reinhardtii GN=GAPA PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.250e-34
Identity = 76/124 (61.29%), Postives = 93/124 (75.00%), Query Frame = 2
Query:  194 TSALGSSSSGYRKVAAQA--------KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDWASTL*LKG 541
            T +  SS SG R  AA+A        K++VAINGFGRIGRNFLRCWHGR+++ L+VVAIND+GGVKQASHLLKYDSTLG F ADVK V    ISVDGK I++VS+R+P+ LPW +    L ++G
Sbjct:   11 TGSAVSSKSGVRAKAARAVVDVRAEKKIRVAINGFGRIGRNFLRCWHGRQNTLLDVVAINDSGGVKQASHLLKYDSTLGTFAADVKIVDDSHISVDGKQIKIVSSRDPLQLPWKEMNIDLVIEG 134          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3PA_CHOCR (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Chondrus crispus GN=GAPA PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.949e-34
Identity = 77/163 (47.24%), Postives = 102/163 (62.58%), Query Frame = 2
Query:   47 MASATLSVAKSALQGNGKG-FSEFSGLRN---SASLPFGRKSS-----DDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPW 508
            +A+   +   S  Q  G+  F++FSG++    S+ L   +  S      D +     + S + +++ G        K++VAINGFGRIGRNF+RCW GR DS +EVV INDT GVK ASHLLKYDS LG F+ADV   G D ISV+GK I++VSNRNP+ LPW
Sbjct:    7 VATVRATTKSSVCQVQGRSTFAQFSGMKKVNQSSRLQPAQSGSAFGGYSDANDAFYTRVSGIVAATFG-----PTMKVRVAINGFGRIGRNFIRCWAGRSDSNMEVVCINDTSGVKTASHLLKYDSILGTFDADVS-AGEDTISVNGKTIKIVSNRNPLQLPW 163          

HSP 2 Score: 31.5722 bits (70), Expect = 3.949e-34
Identity = 14/26 (53.85%), Postives = 17/26 (65.38%), Query Frame = 1
Query:  490 PRQSPLGGLGIDLVIEGTGVFVDREG 567
            P Q P   + ID+V+E TGVFVD  G
Sbjct:  158 PLQLPWKEMNIDIVVEATGVFVDAPG 183          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P2_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Synechocystis sp. (strain PCC 6803) GN=gap2 PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 4.736e-28
Identity = 54/88 (61.36%), Postives = 67/88 (76.14%), Query Frame = 2
Query:  254 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDW 517
            +VAINGFGRIGRNFLRCW GR DS LEVV INDT   +  +HLL+YDS LG  +AD+     + I+V+GK I+ VS+RNP+NLPW +W
Sbjct:    3 RVAINGFGRIGRNFLRCWLGRTDSQLEVVGINDTSDPRTNAHLLRYDSMLGKLDADIS-ADENSITVNGKTIKCVSDRNPLNLPWAEW 89          

HSP 2 Score: 30.0314 bits (66), Expect = 4.736e-28
Identity = 14/28 (50.00%), Postives = 16/28 (57.14%), Query Frame = 1
Query:  490 PRQSPLGGLGIDLVIEGTGVFVDREGGS 573
            P   P     +DLVIE TGVFV  EG +
Sbjct:   81 PLNLPWAEWNVDLVIEATGVFVTHEGAT 108          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3PA_SCEVA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Scenedesmus vacuolatus GN=GapA PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.010e-28
Identity = 62/92 (67.39%), Postives = 74/92 (80.43%), Query Frame = 2
Query:  266 NGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDWASTL*LKG 541
            NGFGRIGRNFLRC   R++S LEV+AIND+GGVKQASHLLKYDSTLG F+ADVK V    ISV+GK I+VVS+R+P  LPWG+    L ++G
Sbjct:    1 NGFGRIGRNFLRCLETRQNSLLEVIAINDSGGVKQASHLLKYDSTLGKFDADVKIVDDGHISVNGKSIRVVSSRDPTKLPWGEMEIDLVIEG 92          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P2_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena sp. (strain PCC 7120) GN=gap2 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.847e-25
Identity = 48/89 (53.93%), Postives = 65/89 (73.03%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDW 517
            ++VAINGFGRIGRNF RCW GR+++ +E+VA+NDT   +  +HLLKYDS LG  +        + I+V+GK I+ VS+RNP NLPW +W
Sbjct:    2 IRVAINGFGRIGRNFARCWLGRENTNIELVAVNDTSDPRTNAHLLKYDSMLGKLKNVDITADDNSITVNGKTIKCVSDRNPENLPWKEW 90          

HSP 2 Score: 30.4166 bits (67), Expect = 5.847e-25
Identity = 14/28 (50.00%), Postives = 17/28 (60.71%), Query Frame = 1
Query:  490 PRQSPLGGLGIDLVIEGTGVFVDREGGS 573
            P   P     IDL+IE TGVFV +EG +
Sbjct:   82 PENLPWKEWEIDLIIEATGVFVSKEGAT 109          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P2_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap2 PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 9.904e-25
Identity = 49/89 (55.06%), Postives = 65/89 (73.03%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDW 517
            ++VAINGFGRIGRNF RCW GR++S +E+VA+NDT   +  +HLLKYDS LG  +        + I+V+GK I+ VS+RNP NLPW +W
Sbjct:    2 IRVAINGFGRIGRNFARCWLGRENSNIELVAVNDTSDPRTNAHLLKYDSMLGKLKNVDITADDNSITVNGKTIKCVSDRNPENLPWKEW 90          

HSP 2 Score: 28.4906 bits (62), Expect = 9.904e-25
Identity = 13/26 (50.00%), Postives = 15/26 (57.69%), Query Frame = 1
Query:  490 PRQSPLGGLGIDLVIEGTGVFVDREG 567
            P   P     IDL+IE TGVF  +EG
Sbjct:   82 PENLPWKEWEIDLIIESTGVFTSKEG 107          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P_AQUAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Aquifex aeolicus GN=gap PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.954e-23
Identity = 46/88 (52.27%), Postives = 60/88 (68.18%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGD 514
            +KV INGFGRIGR+F R   GR++  +E+VAIND    K  +HLLKYDS  GIF+  V+    D I VDGK I+V + ++P  +PWGD
Sbjct:    3 IKVGINGFGRIGRSFFRASWGREE--IEIVAINDLTDAKHLAHLLKYDSVHGIFKGSVE-AKDDSIVVDGKEIKVFAQKDPSQIPWGD 87          

HSP 2 Score: 39.2762 bits (90), Expect = 3.954e-23
Identity = 18/28 (64.29%), Postives = 20/28 (71.43%), Query Frame = 1
Query:  490 PRQSPLGGLGIDLVIEGTGVFVDREGGS 573
            P Q P G LG+D+VIE TGVF DRE  S
Sbjct:   80 PSQIPWGDLGVDVVIEATGVFRDRENAS 107          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P_STRCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces coelicolor GN=gap PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.843e-20
Identity = 43/88 (48.86%), Postives = 61/88 (69.32%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGD 514
            ++V INGFGRIGRN+ R     + + +E+VA+ND G     +HLLKYD+ LG  +A+V     D I+VDGK I+V+S RNP ++PWG+
Sbjct:    3 IRVGINGFGRIGRNYFRALL-EQGADIEIVAVNDLGDTATTAHLLKYDTILGRLKAEVSHT-EDTITVDGKTIKVLSERNPADIPWGE 88          

HSP 2 Score: 30.8018 bits (68), Expect = 2.843e-20
Identity = 12/24 (50.00%), Postives = 16/24 (66.67%), Query Frame = 1
Query:  490 PRQSPLGGLGIDLVIEGTGVFVDR 561
            P   P G LG+D+VIE TG+F  +
Sbjct:   81 PADIPWGELGVDIVIESTGIFTKK 104          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3PP_RALEH (Glyceraldehyde-3-phosphate dehydrogenase, plasmid OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbGP PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.658e-19
Identity = 44/89 (49.44%), Postives = 57/89 (64.04%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGD 514
            +KVAING+GRIGRN LR  + G K   LE+VAIND G     +HL +YD+  G F  +V  V  D   V+G  I+V++ RNP  LPWG+
Sbjct:    3 IKVAINGYGRIGRNVLRAHYEGGKRHDLEIVAINDLGNAATNAHLTQYDTVHGRFPGEVS-VDGDAFRVNGDRIRVLAQRNPAELPWGE 90          

HSP 2 Score: 31.187 bits (69), Expect = 6.658e-19
Identity = 13/28 (46.43%), Postives = 19/28 (67.86%), Query Frame = 1
Query:  490 PRQSPLGGLGIDLVIEGTGVFVDREGGS 573
            P + P G LG+D+V+E TG+F  +E  S
Sbjct:   83 PAELPWGELGVDVVMECTGLFTSKEKAS 110          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3PC_RALEH (Glyceraldehyde-3-phosphate dehydrogenase, chromosomal OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbGC PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.126e-18
Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGD 514
            +KVAING+GRIGRN LR  + G K   +E+VAIND G     +HL +YD+  G F  +V  V  D   V+G  I+V++ RNP  LPWG+
Sbjct:    3 IKVAINGYGRIGRNVLRAHYEGGKRHDIEIVAINDLGNAATNAHLTQYDTVHGRFPGEVS-VDGDAFRVNGDRIRVLAQRNPAELPWGE 90          

HSP 2 Score: 31.187 bits (69), Expect = 1.126e-18
Identity = 13/28 (46.43%), Postives = 19/28 (67.86%), Query Frame = 1
Query:  490 PRQSPLGGLGIDLVIEGTGVFVDREGGS 573
            P + P G LG+D+V+E TG+F  +E  S
Sbjct:   83 PAELPWGELGVDVVMECTGLFTSKEKAS 110          
The following BLAST results are available for this feature:
BLAST of CX294957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
G3PA_CHLRE2.250e-3461.29Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_CHOCR3.949e-3447.24Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3P2_SYNY34.736e-2861.36Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Syne... [more]
G3PA_SCEVA7.010e-2867.39Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P2_ANASP5.847e-2553.93Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P2_ANAVT9.904e-2555.06Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P_AQUAE3.954e-2352.27Glyceraldehyde-3-phosphate dehydrogenase OS=Aquife... [more]
G3P_STRCO2.843e-2048.86Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3PP_RALEH6.658e-1949.44Glyceraldehyde-3-phosphate dehydrogenase, plasmid ... [more]
G3PC_RALEH1.126e-1848.31Glyceraldehyde-3-phosphate dehydrogenase, chromoso... [more]

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Properties
Property NameValue
Genbank descriptionC05065A08SK DroRLeaf1 Citrus clementina cDNA clone C05065A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294957 ID=CX294957; Name=CX294957; organism=Citrus clementina; type=EST; length=587bp
GAGGCCACTGCTTGCTCTTGCTTGCATCATCCAGCAAATACCTATCATGG
CTTCGGCCACTCTCTCTGTAGCCAAATCAGCTCTTCAGGGAAATGGTAAG
GGATTCTCAGAATTCTCAGGTCTACGCAACTCTGCAAGCCTTCCTTTTGG
CAGGAAATCTTCTGATGACTTCCATTCAGTCATTGCTCTCCAGACCTCTG
CTTTAGGAAGCAGCAGCAGCGGGTACAGGAAGGTTGCTGCTCAGGCAAAG
CTGAAGGTTGCAATCAATGGGTTTGGTAGAATTGGTAGGAACTTCTTGAG
GTGCTGGCACGGCCGCAAGGACTCTCCACTTGAAGTCGTTGCCATCAATG
ACACCGGAGGTGTCAAGCAGGCCTCTCACCTCCTCAAGTACGACTCCACC
CTTGGCATCTTTGAAGCCGATGTTAAACCAGTTGGTACTGATGGCATCTC
TGTTGATGGCAAGGTCATCCAGGTTGTTTCTAACCGCAACCCCGTCAATC
TCCCCTGGGGGGACTGGGCATCGACCTTGTGATTGAAGGGACAGGAGTGT
TTGTAGACAGAGAGGGCGGCAGCACATCAGCTGTGCA
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