CX294957

Overview
NameCX294957
Unique NameCX294957
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: E4PD_SHEB2 (D-erythrose-4-phosphate dehydrogenase OS=Shewanella baltica (strain OS223) GN=epd PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.652e-11
Identity = 33/87 (37.93%), Postives = 51/87 (58.62%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPW 508
            ++VAING+GRIGR+ LR  +   K   +++VAIN+    +   HL +YD+T G F   VK V  D + +    I+++   +P  LPW
Sbjct:    2 IRVAINGYGRIGRSILRALYESGKRQQMQIVAINELAKPEAIIHLTQYDTTHGRFAHKVKLV-DDHMLIGDDAIKILHEPDPTKLPW 87          

HSP 2 Score: 28.8758 bits (63), Expect = 1.652e-11
Identity = 12/27 (44.44%), Postives = 17/27 (62.96%), Query Frame = 1
Query:  484 PQPRQSPLGGLGIDLVIEGTGVFVDRE 564
            P P + P   + ID+V E TGV +DR+
Sbjct:   80 PDPTKLPWHEMDIDIVYEATGVLLDRQ 106          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P_ERYGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Erysiphe graminis subsp. hordei GN=GPD PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.049e-11
Identity = 43/113 (38.05%), Postives = 66/113 (58.41%), Query Frame = 2
Query:  245 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDWASTL*LKGQECL-*TERAAAH 577
            A +KV INGFGRIGR   R  +  +   +EVVA+ND     + A+++LKYDST G F  D++ V  DG+ V+ + ++  + RNP  +PW +  +   ++       TE+A AH
Sbjct:    2 APIKVGINGFGRIGRIVFR--NAAQSCEVEVVAVNDPFIEPEYAAYMLKYDSTHGQFNGDIQTV-EDGLVVNSRNVKFYNKRNPEEIPWAETGAEYIVESTGVFTTTEKAKAH 111          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P_PODAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Podospora anserina GN=GPD PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.676e-11
Identity = 42/111 (37.84%), Postives = 67/111 (60.36%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDWASTL*LKGQECL-*TERAAAH 577
            +KV INGFGRIGR   R  +  +   +E+VA+ND     K A ++LKYDST G+F+  ++  G+D + V+GK ++  + R+P  +PW D  +   ++       TE+A+AH
Sbjct:    3 VKVGINGFGRIGRIVFR--NAVEHPDVEIVAVNDPFIEPKYAEYMLKYDSTHGVFKGTIQVSGSD-LIVNGKTVKFYTERDPSAIPWKDTGAEYIVESTGVFTTTEKASAH 110          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P2_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces lactis GN=GAP2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.676e-11
Identity = 41/89 (46.07%), Postives = 55/89 (61.80%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGD 514
            ++VAINGFGRIGR  LR    R +  +EVVAIND    V  A+++ KYDST G F  +V     + + +DGK + V   R+P  LPWG+
Sbjct:    2 VRVAINGFGRIGRLVLRIALSRPN--VEVVAINDPFISVDYAAYMFKYDSTHGRFAGEVSH-DENSLIIDGKKVLVFQERDPATLPWGE 87          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: E4PD_AERS4 (D-erythrose-4-phosphate dehydrogenase OS=Aeromonas salmonicida (strain A449) GN=epd PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 2.784e-11
Identity = 32/87 (36.78%), Postives = 53/87 (60.92%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPW 508
            +K+AING+GRIGRN LR  +   +D  +++VAIN+    +   HL ++D++ G F   V+  G   + V   +I + + ++P NLPW
Sbjct:    2 IKIAINGYGRIGRNVLRALYESGRDKNIKIVAINELAAPEAMVHLTRFDTSHGRFRYPVQLAG-HSMLVGEDLISLFAEQDPANLPW 87          

HSP 2 Score: 25.7942 bits (55), Expect = 2.784e-11
Identity = 11/24 (45.83%), Postives = 15/24 (62.50%), Query Frame = 1
Query:  490 PRQSPLGGLGIDLVIEGTGVFVDR 561
            P   P   LG+D+V++ TGVF  R
Sbjct:   82 PANLPWRALGVDVVLDCTGVFGSR 105          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P_PHANO (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeosphaeria nodorum GN=GPD1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.495e-11
Identity = 36/89 (40.45%), Postives = 58/89 (65.17%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGD 514
            +KV INGFGRIGR   R  +  + + +E+VA+ND       A+++LKYDS  G F+ D+K  G D ++++GK I+  + ++P N+PW +
Sbjct:    3 VKVGINGFGRIGRIVFR--NAIEHNDVEIVAVNDPFIEPHYAAYMLKYDSQHGQFKGDIKVEGND-LTINGKTIRFYTEKDPANIPWSE 88          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: E4PD_AERHH (D-erythrose-4-phosphate dehydrogenase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=epd PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 3.614e-11
Identity = 32/87 (36.78%), Postives = 53/87 (60.92%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPW 508
            +K+AING+GRIGRN LR  +   +D  +++VAIN+    +   HL ++D++ G F   V+  G + + V   +I + + R+P  LPW
Sbjct:    2 IKIAINGYGRIGRNVLRALYESGRDKNIKIVAINELAAPEAMVHLTRFDTSHGRFHHPVQLAG-NSMLVGEDLISLFAERDPSRLPW 87          

HSP 2 Score: 26.1794 bits (56), Expect = 3.614e-11
Identity = 11/24 (45.83%), Postives = 16/24 (66.67%), Query Frame = 1
Query:  490 PRQSPLGGLGIDLVIEGTGVFVDR 561
            P + P   LG+D+V++ TGVF  R
Sbjct:   82 PSRLPWRALGVDVVLDCTGVFGSR 105          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P2_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agaricus bisporus GN=gpd2 PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 3.614e-11
Identity = 36/88 (40.91%), Postives = 54/88 (61.36%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWG 511
            +KV INGFGRIGR  LR  +  +   +EVVA+ND    ++  +++ KYDS  G F+  V+ V      VDG+ ++V + R+P  +PWG
Sbjct:    2 VKVGINGFGRIGRIVLR--NALQFQDIEVVAVNDPFIDLEYMAYMFKYDSVHGRFKGTVE-VKNGSFVVDGRPMKVFAERDPAAIPWG 86          

HSP 2 Score: 26.9498 bits (58), Expect = 3.614e-11
Identity = 11/21 (52.38%), Postives = 13/21 (61.90%), Query Frame = 1
Query:  490 PRQSPLGGLGIDLVIEGTGVF 552
            P   P G +G D V+E TGVF
Sbjct:   80 PAAIPWGSVGADYVVESTGVF 100          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: E4PD_SHEON (D-erythrose-4-phosphate dehydrogenase OS=Shewanella oneidensis GN=epd PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 3.614e-11
Identity = 34/88 (38.64%), Postives = 52/88 (59.09%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDG-ISVDGKVIQVVSNRNPVNLPW 508
            ++VAING+GRIGR+ LR  +   K   +++VAIN+    +   HL +YD+T G F+  VK V  DG + +    I++    +P  LPW
Sbjct:    2 IRVAINGYGRIGRSILRALYESGKRQQIQIVAINELAKPEAIIHLTQYDTTHGRFQPRVKLV--DGQMQIGDDTIKIFHEPDPAKLPW 87          

HSP 2 Score: 28.1054 bits (61), Expect = 3.614e-11
Identity = 12/27 (44.44%), Postives = 16/27 (59.26%), Query Frame = 1
Query:  484 PQPRQSPLGGLGIDLVIEGTGVFVDRE 564
            P P + P   L ID+V E TG  +DR+
Sbjct:   80 PDPAKLPWRELDIDIVYEATGAILDRQ 106          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3PC_PHYPA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Physcomitrella patens GN=GAPC PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 6.086e-11
Identity = 36/95 (37.89%), Postives = 55/95 (57.89%), Query Frame = 2
Query:  233 VAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQ-ASHLLKYDSTLGIFEADVKPVGTDG-ISVDGKVIQVVSNRNPVNLPWG 511
            +   AK+KV INGFGRIGR   R    R D  +E+VAIND     +  +++ KYDST G ++     + ++G ++  G  + V + R+P  +PWG
Sbjct:    1 MVGSAKIKVGINGFGRIGRLVARVALERDD--IELVAINDPFITPEYMTYMFKYDSTHGQWKKTEVTLHSEGHLTFGGNPVAVYACRDPSEIPWG 93          

HSP 2 Score: 30.0314 bits (66), Expect = 6.086e-11
Identity = 12/25 (48.00%), Postives = 16/25 (64.00%), Query Frame = 1
Query:  490 PRQSPLGGLGIDLVIEGTGVFVDRE 564
            P + P G  G D V+E TGVF D++
Sbjct:   87 PSEIPWGKHGADFVVESTGVFTDKD 111          
The following BLAST results are available for this feature:
BLAST of CX294957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
E4PD_SHEB21.652e-1137.93D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
G3P_ERYGR2.049e-1138.05Glyceraldehyde-3-phosphate dehydrogenase OS=Erysip... [more]
G3P_PODAN2.676e-1137.84Glyceraldehyde-3-phosphate dehydrogenase OS=Podosp... [more]
G3P2_KLULA2.676e-1146.07Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
E4PD_AERS42.784e-1136.78D-erythrose-4-phosphate dehydrogenase OS=Aeromonas... [more]
G3P_PHANO3.495e-1140.45Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeos... [more]
E4PD_AERHH3.614e-1136.78D-erythrose-4-phosphate dehydrogenase OS=Aeromonas... [more]
G3P2_AGABI3.614e-1140.91Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agar... [more]
E4PD_SHEON3.614e-1138.64D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
G3PC_PHYPA6.086e-1137.89Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionC05065A08SK DroRLeaf1 Citrus clementina cDNA clone C05065A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294957 ID=CX294957; Name=CX294957; organism=Citrus clementina; type=EST; length=587bp
GAGGCCACTGCTTGCTCTTGCTTGCATCATCCAGCAAATACCTATCATGG
CTTCGGCCACTCTCTCTGTAGCCAAATCAGCTCTTCAGGGAAATGGTAAG
GGATTCTCAGAATTCTCAGGTCTACGCAACTCTGCAAGCCTTCCTTTTGG
CAGGAAATCTTCTGATGACTTCCATTCAGTCATTGCTCTCCAGACCTCTG
CTTTAGGAAGCAGCAGCAGCGGGTACAGGAAGGTTGCTGCTCAGGCAAAG
CTGAAGGTTGCAATCAATGGGTTTGGTAGAATTGGTAGGAACTTCTTGAG
GTGCTGGCACGGCCGCAAGGACTCTCCACTTGAAGTCGTTGCCATCAATG
ACACCGGAGGTGTCAAGCAGGCCTCTCACCTCCTCAAGTACGACTCCACC
CTTGGCATCTTTGAAGCCGATGTTAAACCAGTTGGTACTGATGGCATCTC
TGTTGATGGCAAGGTCATCCAGGTTGTTTCTAACCGCAACCCCGTCAATC
TCCCCTGGGGGGACTGGGCATCGACCTTGTGATTGAAGGGACAGGAGTGT
TTGTAGACAGAGAGGGCGGCAGCACATCAGCTGTGCA
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