CX294957

Overview
NameCX294957
Unique NameCX294957
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294957_ssr209 microsatellite CX294957_ssr209:209..220. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5796 contig Ccv1_Contig5796:63..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: E4PD_SHEPW (D-erythrose-4-phosphate dehydrogenase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=epd PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 9.800e-12
Identity = 33/87 (37.93%), Postives = 51/87 (58.62%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPW 508
            ++VAING+GRIGR+ LR  +   K   +++VAIN+    +   HL +YD+T G F   VK +    + +    I+++   NP NLPW
Sbjct:    2 IRVAINGYGRIGRSILRAVYESAKRDRIQIVAINELAKPEAMLHLTQYDTTHGRFHTQVK-LDEQHMIIGDDAIKLLHEPNPANLPW 87          

HSP 2 Score: 27.335 bits (59), Expect = 9.800e-12
Identity = 12/27 (44.44%), Postives = 15/27 (55.56%), Query Frame = 1
Query:  484 PQPRQSPLGGLGIDLVIEGTGVFVDRE 564
            P P   P   + ID+V E TGV  DR+
Sbjct:   80 PNPANLPWQEMDIDIVFEATGVINDRQ 106          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3PC_DIACA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Dianthus caryophyllus GN=GAPC PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 9.800e-12
Identity = 35/91 (38.46%), Postives = 50/91 (54.95%), Query Frame = 2
Query:  245 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFE-ADVKPVGTDGISVDGKVIQVVSNRNPVNLPWG 511
            A +K+ INGFGRIGR   R    R+D   E+VA+ND     +  +++ KYDS  G ++  D+K      +    K + V  NRNP  +PWG
Sbjct:    2 APIKIGINGFGRIGRLVARVILQRED--CELVAVNDPFITTEYMTYMFKYDSVHGQWKHHDIKVKDEKTLLFGEKAVTVFGNRNPEEIPWG 90          

HSP 2 Score: 33.8834 bits (76), Expect = 9.800e-12
Identity = 13/25 (52.00%), Postives = 17/25 (68.00%), Query Frame = 1
Query:  490 PRQSPLGGLGIDLVIEGTGVFVDRE 564
            P + P GG G D V+E TGVF D++
Sbjct:   84 PEEIPWGGTGADYVVESTGVFTDKD 108          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P_BUCAP (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=gapA PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.806e-12
Identity = 37/86 (43.02%), Postives = 56/86 (65.12%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPW 508
            +K+ INGFGRIGR   R    R++  +EVVAIND    K  +++LKYDST G F+ D++ V  + + ++GK I++ S ++P  L W
Sbjct:    3 IKIGINGFGRIGRVLFRLAQEREN--IEVVAINDLLDPKYIAYMLKYDSTHGNFKKDIE-VKNNNLIINGKKIRITSIKDPEKLMW 85          

HSP 2 Score: 22.3274 bits (46), Expect = 9.806e-12
Identity = 8/15 (53.33%), Postives = 13/15 (86.67%), Query Frame = 1
Query:  520 IDLVIEGTGVFVDRE 564
            ID+VIE TG+F+ ++
Sbjct:   90 IDVVIESTGLFLTKD 104          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P2_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Candida glabrata GN=GPD2 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.806e-12
Identity = 41/88 (46.59%), Postives = 53/88 (60.23%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWG 511
            +++AINGFGRIGR  LR    R  S +EVVA+ND       A+++ KYDST G +  +V       I +DGK I V   R+P NLPWG
Sbjct:    2 VRIAINGFGRIGRLVLRVALSR--SNIEVVAVNDPFITTDYAAYMFKYDSTHGRYAGEVTH-DDKHIIIDGKKIAVHQERDPANLPWG 86          

HSP 2 Score: 24.2534 bits (51), Expect = 9.806e-12
Identity = 10/21 (47.62%), Postives = 12/21 (57.14%), Query Frame = 1
Query:  490 PRQSPLGGLGIDLVIEGTGVF 552
            P   P G   ID+ I+ TGVF
Sbjct:   80 PANLPWGSENIDIAIDSTGVF 100          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P_KLEPN (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Klebsiella pneumoniae GN=gap PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 9.834e-12
Identity = 38/84 (45.24%), Postives = 53/84 (63.10%), Query Frame = 2
Query:  263 INGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGD 514
            INGFGRIGR   R    +K S +E+VAIND    +  +++LKYDST G F+  V+ V    + V+GK I+V + R+P NL W +
Sbjct:    1 INGFGRIGRIVFRA--AQKRSDIEIVAINDLLDAEYMAYMLKYDSTHGRFDGTVE-VKDGHLVVNGKKIRVTAERDPANLKWDE 81          

HSP 2 Score: 23.0978 bits (48), Expect = 9.834e-12
Identity = 8/17 (47.06%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  514 LGIDLVIEGTGVFVDRE 564
            +G+D+V E TG+F+  E
Sbjct:   82 VGVDVVAEATGIFLTDE 98          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: E4PD_SHESR (D-erythrose-4-phosphate dehydrogenase OS=Shewanella sp. (strain MR-7) GN=epd PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.272e-11
Identity = 34/87 (39.08%), Postives = 53/87 (60.92%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPW 508
            ++VAING+GRIGR+ LR  +   K   +++VAIN+    +   HL +YD+T G F+  VK V  D + +   VI+++   +P  LPW
Sbjct:    2 IRVAINGYGRIGRSILRALYESGKRQQIQIVAINELAKPEAIVHLTQYDTTHGRFQPRVKLV-DDQMLIGDDVIKILHEPDPAKLPW 87          

HSP 2 Score: 26.5646 bits (57), Expect = 1.272e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 1
Query:  484 PQPRQSPLGGLGIDLVIEGTGVFVDR 561
            P P + P   + ID+V E TG  +DR
Sbjct:   80 PDPAKLPWREMDIDIVYEATGAILDR 105          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: E4PD_SHESM (D-erythrose-4-phosphate dehydrogenase OS=Shewanella sp. (strain MR-4) GN=epd PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.272e-11
Identity = 34/87 (39.08%), Postives = 53/87 (60.92%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPW 508
            ++VAING+GRIGR+ LR  +   K   +++VAIN+    +   HL +YD+T G F+  VK V  D + +   VI+++   +P  LPW
Sbjct:    2 IRVAINGYGRIGRSILRALYESGKRQQIQIVAINELAKPEAIVHLTQYDTTHGRFQPRVKLV-DDQMLIGDDVIKILHEPDPAKLPW 87          

HSP 2 Score: 26.5646 bits (57), Expect = 1.272e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 1
Query:  484 PQPRQSPLGGLGIDLVIEGTGVFVDR 561
            P P + P   + ID+V E TG  +DR
Sbjct:   80 PDPAKLPWHEMDIDIVYEATGAILDR 105          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: E4PD_SHESA (D-erythrose-4-phosphate dehydrogenase OS=Shewanella sp. (strain ANA-3) GN=epd PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.272e-11
Identity = 34/87 (39.08%), Postives = 53/87 (60.92%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPW 508
            ++VAING+GRIGR+ LR  +   K   +++VAIN+    +   HL +YD+T G F+  VK V  D + +   VI+++   +P  LPW
Sbjct:    2 IRVAINGYGRIGRSILRALYESGKRQQIQIVAINELAKPEAIIHLTQYDTTHGRFQPRVKLV-DDQMLIGDDVIKILHEPDPAKLPW 87          

HSP 2 Score: 26.5646 bits (57), Expect = 1.272e-11
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 1
Query:  484 PQPRQSPLGGLGIDLVIEGTGVFVDR 561
            P P + P   + ID+V E TG  +DR
Sbjct:   80 PDPAKLPWREMDIDIVYEATGAILDR 105          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: E4PD_ALTMD (D-erythrose-4-phosphate dehydrogenase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=epd PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 1.272e-11
Identity = 36/89 (40.45%), Postives = 53/89 (59.55%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGD 514
            + +AINGFGRIGRN LR  +   +++   VVAIND    +  +HLLKYD+  G F  DV  +  + ++V G  I +++  +   LPW D
Sbjct:    2 VNIAINGFGRIGRNVLRALYESGRNNEFNVVAINDIAKPEGIAHLLKYDTAHGRFRFDV-ALENNTLNVAGDDIALLAISDIKELPWRD 89          

HSP 2 Score: 28.1054 bits (61), Expect = 1.272e-11
Identity = 12/26 (46.15%), Postives = 17/26 (65.38%), Query Frame = 1
Query:  493 RQSPLGGLGIDLVIEGTGVFVDREGG 570
            ++ P   LG+D+V+E TG F DR  G
Sbjct:   83 KELPWRDLGVDIVLECTGKFDDRASG 108          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P_COLLN (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum lindemuthianum GN=GPDA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 1.652e-11
Identity = 37/89 (41.57%), Postives = 56/89 (62.92%), Query Frame = 2
Query:  245 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPW 508
            A +KV INGFGRIGR   R  +  +   +E+VA+ND     K A+++LKYDST GIF  ++   G D + ++GK ++  + R+P  +PW
Sbjct:    2 APIKVGINGFGRIGRIVFR--NAVEHPDVEIVAVNDPFIETKYAAYMLKYDSTHGIFNGEIAQDGND-LVINGKKVKFYTERDPAVIPW 87          

HSP 2 Score: 21.9422 bits (45), Expect = 1.652e-11
Identity = 10/21 (47.62%), Postives = 11/21 (52.38%), Query Frame = 1
Query:  490 PRQSPLGGLGIDLVIEGTGVF 552
            P   P    G D V+E TGVF
Sbjct:   82 PAVIPWKETGADYVVESTGVF 102          
The following BLAST results are available for this feature:
BLAST of CX294957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
E4PD_SHEPW9.800e-1237.93D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
G3PC_DIACA9.800e-1238.46Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_BUCAP9.806e-1243.02Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3P2_CANGA9.806e-1246.59Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Cand... [more]
G3P_KLEPN9.834e-1245.24Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
E4PD_SHESR1.272e-1139.08D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_SHESM1.272e-1139.08D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_SHESA1.272e-1139.08D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_ALTMD1.272e-1140.45D-erythrose-4-phosphate dehydrogenase OS=Alteromon... [more]
G3P_COLLN1.652e-1141.57Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]

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Properties
Property NameValue
Genbank descriptionC05065A08SK DroRLeaf1 Citrus clementina cDNA clone C05065A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294957 ID=CX294957; Name=CX294957; organism=Citrus clementina; type=EST; length=587bp
GAGGCCACTGCTTGCTCTTGCTTGCATCATCCAGCAAATACCTATCATGG
CTTCGGCCACTCTCTCTGTAGCCAAATCAGCTCTTCAGGGAAATGGTAAG
GGATTCTCAGAATTCTCAGGTCTACGCAACTCTGCAAGCCTTCCTTTTGG
CAGGAAATCTTCTGATGACTTCCATTCAGTCATTGCTCTCCAGACCTCTG
CTTTAGGAAGCAGCAGCAGCGGGTACAGGAAGGTTGCTGCTCAGGCAAAG
CTGAAGGTTGCAATCAATGGGTTTGGTAGAATTGGTAGGAACTTCTTGAG
GTGCTGGCACGGCCGCAAGGACTCTCCACTTGAAGTCGTTGCCATCAATG
ACACCGGAGGTGTCAAGCAGGCCTCTCACCTCCTCAAGTACGACTCCACC
CTTGGCATCTTTGAAGCCGATGTTAAACCAGTTGGTACTGATGGCATCTC
TGTTGATGGCAAGGTCATCCAGGTTGTTTCTAACCGCAACCCCGTCAATC
TCCCCTGGGGGGACTGGGCATCGACCTTGTGATTGAAGGGACAGGAGTGT
TTGTAGACAGAGAGGGCGGCAGCACATCAGCTGTGCA
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