CX294962

Overview
NameCX294962
Unique NameCX294962
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length769
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294962 vs. ExPASy Swiss-Prot
Match: FRS6_ARATH (Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=FRS6 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.869e-18
Identity = 61/202 (30.20%), Postives = 90/202 (44.55%), Query Frame = 3
Query:   78 NPWLKTQYMLRRKWAYCFCKSVFSAGIRSTQHCHGISHIFHSLTSKATTPLQFVQQYFKVAEQQRREELYEDLRCNGSAPPTILRSNAIEKEAAKIYSCTMFKLFQ---EELLECLSVAIEEIQGDGM--TAKFRLTEEGQKKE---KIVEFNCMETHLTCSCKKYESVGILCVHALKVLNAKNIFHIPPQYILKRWTKSAK 659
            N WL++ Y  R KWA  + K  F AGI +      +   F     K T   +F+ +Y    +++ REE   D+         +    + E + ++IY+  MFK FQ   EE+  C S     + G  +    K R+  E  ++E     V +N     + C C  +   G LC HAL VLN   +  IP +YIL RW K  K
Sbjct:  437 NEWLRSLYEERAKWAPVYLKDTFFAGIAAAHPGETLKPFFERYVHKQTPLKEFLDKYELALQKKHREETLSDIESQTLNTAELKTKCSFETQLSRIYTRDMFKKFQIEVEEMYSCFSTTQVHVDGPFVIFLVKERVRGESSRREIRDFEVLYNRSVGEVRCICSCFNFYGYLCRHALCVLNFNGVEEIPLRYILPRWRKDYK 638          
BLAST of CX294962 vs. ExPASy Swiss-Prot
Match: FRS10_ARATH (Putative protein FAR1-RELATED SEQUENCE 10 OS=Arabidopsis thaliana GN=FRS10 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.072e-12
Identity = 45/143 (31.47%), Postives = 65/143 (45.45%), Query Frame = 3
Query:  318 PTILRSNAIEKEAAKIYSCTMFKLFQEELLECLSVAIEEIQGDGMTAKFRLTEEGQKKEKIVEFNCMETHLTCSCKKYESVGILCVHALKVLNAKNIFHIPPQYILKRWTKSAKDGMVVNGHEGEVVDDSQKHLHLDESNLCT 746
            P++     +E  A  I +   F + Q E++  +  A+ E+             EG   E  V +N     + CSCK++E  GILC H L+VL  KN FHIP QY L RW + +      N +   + DDS +  H     L T
Sbjct:  511 PSLKTCMPMEDHARGILTPYAFSVLQNEMVLSVQYAVAEMANGPFIVHHYKKMEG---ECCVIWNPENEEIQCSCKEFEHSGILCRHTLRVLTVKNCFHIPEQYFLLRWRQESPHVATENQNGQGIGDDSAQTFHSLTETLLT 650          
BLAST of CX294962 vs. ExPASy Swiss-Prot
Match: FRS11_ARATH (Protein FAR1-RELATED SEQUENCE 11 OS=Arabidopsis thaliana GN=FRS11 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.167e-11
Identity = 53/203 (26.11%), Postives = 88/203 (43.35%), Query Frame = 3
Query:   63 YELRANPWLKTQYMLRRKWAYCFCKSVFSAGIRSTQHCHGISHIFHSLTSKATTPLQFVQQYFKVA-------EQQRREELYEDLRCNGSAPPTILRSNAIEKEAAKIYSCTMFKLFQEELLECLSVAIEEIQGDGMTAKFRLTEEGQKKEKIVEFNCMETHLTCSCKKYESVGILCVHALKVLNAKNIFHIPPQYILKRWTK 650
            + L  N  +   Y  R  W+  + +S F AG+  T     I+       S  T    FV+Q   V        EQQ  ++  +++     AP        +E  AA + +   F   QE+L+     A  ++  +G   +     +G +K   V +   E  ++CSC+ +E  G LC HAL+VL+  N F +P +Y+  RW +
Sbjct:  414 FGLHTNRHINNLYASRSLWSLPYLRSHFLAGMTLTGRSKAINAFIQRFLSAQTRLAHFVEQVAVVVDFKDQATEQQTMQQNLQNISLKTGAP--------MESHAASVLTPFAFSKLQEQLVLAAHYASFQMD-EGYLVRHHTKLDGGRK---VYWVPQEGIISCSCQLFEFSGFLCRHALRVLSTGNCFQVPDRYLPLRWRR 604          
The following BLAST results are available for this feature:
BLAST of CX294962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
FRS6_ARATH2.869e-1830.20Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis tha... [more]
FRS10_ARATH3.072e-1231.47Putative protein FAR1-RELATED SEQUENCE 10 OS=Arabi... [more]
FRS11_ARATH1.167e-1126.11Protein FAR1-RELATED SEQUENCE 11 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionC05065B01SK DroRLeaf1 Citrus clementina cDNA clone C05065B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294962 ID=CX294962; Name=CX294962; organism=Citrus clementina; type=EST; length=769bp
GATTGGCCGAGGGTGAATCAGAGGAAGAATTCGAGTCTATGTGGGAATAT
TTACTGGAGCAATATGAGCTTCGTGCAAATCCTTGGCTCAAAACTCAATA
TATGTTGAGAAGAAAATGGGCTTATTGTTTCTGTAAGAGTGTCTTCTCTG
CTGGCATACGATCAACCCAACACTGTCACGGCATCAGTCATATTTTCCAC
AGTTTGACAAGCAAGGCAACAACTCCATTGCAGTTTGTTCAGCAGTACTT
TAAAGTGGCAGAGCAACAGCGTAGAGAAGAATTATATGAAGATCTTCGCT
GCAATGGAAGTGCACCTCCAACAATTTTAAGAAGCAATGCAATTGAGAAA
GAAGCAGCAAAGATATATAGCTGCACAATGTTTAAGCTTTTCCAAGAAGA
GTTGCTTGAATGTTTGTCAGTGGCAATAGAAGAAATTCAAGGTGATGGAA
TGACTGCTAAATTCAGGCTAACTGAGGAAGGCCAGAAGAAGGAGAAAATT
GTTGAATTTAATTGTATGGAAACCCATCTCACATGTAGTTGCAAAAAATA
TGAGTCGGTTGGCATCTTATGTGTACATGCCTTGAAAGTACTGAATGCTA
AAAATATCTTTCATATACCTCCTCAGTATATATTGAAGAGGTGGACAAAA
TCAGCAAAAGATGGGATGGTGGTAAATGGCCACGAAGGGGAAGTTGTTGA
TGACAGCCAGAAGCATTTGCATCTGGATGAGAGTAACTTATGCACAAGCT
TTAATGTCATACTAAAGCT
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