CX294963

Overview
NameCX294963
Unique NameCX294963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length523
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig602 contig Ccv1_Contig602:1..523. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: PMT2_TOBAC (Putrescine N-methyltransferase 2 OS=Nicotiana tabacum GN=PMT2 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.982e-22
Identity = 56/120 (46.67%), Postives = 72/120 (60.00%), Query Frame = 3
Query:  162 GWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            GWFSE  +              +WPGEA SLKV+++LF+GKS+YQ+V++FES  YGKVL LDG +Q TE     Y EMI HLPL SIP+PK              E+ R+ ++E IDI E
Sbjct:   65 GWFSEFSA--------------LWPGEAFSLKVEKLLFQGKSDYQDVMLFESATYGKVLTLDGAIQHTENGGFPYTEMIVHLPLGSIPNPKKVLIIGGGIGFTLFEMLRYPTIEKIDIVE 170          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_NEUCR (Spermidine synthase OS=Neurospora crassa GN=spe-3 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.191e-21
Identity = 52/126 (41.27%), Postives = 73/126 (57.94%), Query Frame = 3
Query:  144 HSTVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            H T+  GWF E  +              MWPG+A +LKV+++L   KS YQ+VL+F+S  +G VLVLD ++Q TE+DE +YQEMI HL + S P+PK             RE+ +HD VE   +C+
Sbjct:    6 HPTIQDGWFREISN--------------MWPGQAMTLKVEKVLHHEKSLYQDVLIFKSTDHGNVLVLDNVIQCTERDEFSYQEMITHLAMNSHPNPKKVLVIGGGDGGVLREVVKHDCVEEAILCD 117          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPSY_YEAST (Spermine synthase OS=Saccharomyces cerevisiae GN=SPE4 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.268e-18
Identity = 48/126 (38.10%), Postives = 70/126 (55.56%), Query Frame = 3
Query:  144 HSTVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            H  +  GWF E              N+  +PG+A ++ V  IL++ +SE+Q++L+F +  YG VLVLDGIVQ TE DE AYQEMI H+ + +  +PK             RE+++H  VE I + E
Sbjct:    7 HPYIKDGWFRE-------------INDKSFPGQAFTMTVDSILYEARSEFQDILIFRNKVYGTVLVLDGIVQCTEFDEFAYQEMITHIAMFAHSNPKRVLIIGGGDGGVLREVAKHSCVEDITMVE 119          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_METJA (Probable spermidine synthase OS=Methanocaldococcus jannaschii GN=speE PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.376e-15
Identity = 46/130 (35.38%), Postives = 70/130 (53.85%), Query Frame = 3
Query:  132 DAKCHSTVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            D KCH      WF+E            Y NN +    A S++VK+IL++ KS +QE+ + ++  +GK L+LD   Q TE+DE  Y E+I+H+PL + P+P+             RE+ +H SVE +D  E
Sbjct:    6 DFKCHI-----WFTE------------YHNNNV----ALSVRVKDILYREKSGFQEIEIIDTYDFGKALILDNTFQTTERDEFIYHELISHIPLFTHPNPRNVLVIGGGDGGTVREVVKHKSVETVDFVE 114          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE2_LEPIN (Spermidine synthase 2 OS=Leptospira interrogans GN=speE2 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.797e-15
Identity = 38/95 (40.00%), Postives = 58/95 (61.05%), Query Frame = 3
Query:  237 GEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            G A  +KVKE L    + +Q++ VFES+ +G++  LDG+V +TE DE AY EMI H+P+ S P+P+             RE+ +H SV+ + +CE
Sbjct:   15 GRALKIKVKEFLHSRTTPFQKIDVFESVGFGRMFTLDGVVMMTEADEFAYHEMIVHVPMMSHPNPEKVLVIGGGDGGTVREVLKHPSVKEVHLCE 109          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_CLOK5 (Spermidine synthase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=speE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.347e-15
Identity = 39/93 (41.94%), Postives = 59/93 (63.44%), Query Frame = 3
Query:  243 AHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            A + K+KE L   K++YQE+ + ++ A G++LVLDGIVQ T KDE  Y EMI H+PL + P+P+             RE+ +H++VE + +CE
Sbjct:   14 AMTYKIKETLVTKKTKYQELAIVDTYALGRMLVLDGIVQTTVKDEYVYHEMITHIPLFTHPNPQKVLIVGGGDGGTVREVLKHETVEKVVLCE 106          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_CLOK1 (Spermidine synthase OS=Clostridium kluyveri (strain NBRC 12016) GN=speE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.347e-15
Identity = 39/93 (41.94%), Postives = 59/93 (63.44%), Query Frame = 3
Query:  243 AHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            A + K+KE L   K++YQE+ + ++ A G++LVLDGIVQ T KDE  Y EMI H+PL + P+P+             RE+ +H++VE + +CE
Sbjct:   14 AMTYKIKETLVTKKTKYQELAIVDTYALGRMLVLDGIVQTTVKDEYVYHEMITHIPLFTHPNPQKVLIVGGGDGGTVREVLKHETVEKVVLCE 106          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_CLOTE (Spermidine synthase OS=Clostridium tetani GN=speE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.003e-15
Identity = 40/89 (44.94%), Postives = 56/89 (62.92%), Query Frame = 3
Query:  255 KVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            K+KE L + K+EYQ++ + ++ A G++LVLDGIVQ + KDE  Y EMI H+PL + P+PK             REI +H SVE   +CE
Sbjct:   18 KIKETLVRKKTEYQDLAIVDTYALGRMLVLDGIVQTSIKDEYVYHEMITHIPLYTHPNPKKVLVVGGGDGGTIREILKHPSVEKAVLCE 106          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE1_AQUAE (Spermidine synthase 1 OS=Aquifex aeolicus GN=speE1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.828e-15
Identity = 41/93 (44.09%), Postives = 58/93 (62.37%), Query Frame = 3
Query:  246 HSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVE---LIDI 515
            H   V +IL++GKS YQE+ V ES  +G++L+LDG+VQL EK E  Y E +AH+PL + P+P+             RE+ +HD VE   L+DI
Sbjct:   17 HCYTVSKILYQGKSPYQEIQVIESPEFGRMLILDGVVQLDEKYEFLYHEYLAHVPLHAHPNPRNVLIIGGGDGGTLREVLKHDIVERAVLVDI 109          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE1_THETN (Spermidine synthase 1 OS=Thermoanaerobacter tengcongensis GN=speE1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.165e-14
Identity = 40/91 (43.96%), Postives = 55/91 (60.44%), Query Frame = 3
Query:  249 SLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            S+KVKE L   K+ YQ + + +S  +G+VLVLDGI+Q TEKDE  Y EMI H+PL +  +PK             RE+ +H SVE + + E
Sbjct:   16 SIKVKETLVVEKTPYQHLAILDSYQFGRVLVLDGILQTTEKDEFVYHEMIVHVPLFTHKNPKDVLIIGGGDGGSVREVLKHSSVERVVLAE 106          
The following BLAST results are available for this feature:
BLAST of CX294963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
PMT2_TOBAC1.982e-2246.67Putrescine N-methyltransferase 2 OS=Nicotiana taba... [more]
SPEE_NEUCR2.191e-2141.27Spermidine synthase OS=Neurospora crassa GN=spe-3 ... [more]
SPSY_YEAST2.268e-1838.10Spermine synthase OS=Saccharomyces cerevisiae GN=S... [more]
SPEE_METJA1.376e-1535.38Probable spermidine synthase OS=Methanocaldococcus... [more]
SPEE2_LEPIN1.797e-1540.00Spermidine synthase 2 OS=Leptospira interrogans GN... [more]
SPEE_CLOK52.347e-1541.94Spermidine synthase OS=Clostridium kluyveri (strai... [more]
SPEE_CLOK12.347e-1541.94Spermidine synthase OS=Clostridium kluyveri (strai... [more]
SPEE_CLOTE4.003e-1544.94Spermidine synthase OS=Clostridium tetani GN=speE ... [more]
SPEE1_AQUAE6.828e-1544.09Spermidine synthase 1 OS=Aquifex aeolicus GN=speE1... [more]
SPEE1_THETN1.165e-1443.96Spermidine synthase 1 OS=Thermoanaerobacter tengco... [more]

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Properties
Property NameValue
Genbank descriptionC05065B02SK DroRLeaf1 Citrus clementina cDNA clone C05065B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294963 ID=CX294963; Name=CX294963; organism=Citrus clementina; type=EST; length=523bp
ATATGGAGGGCGGCGAAGGAAAAGGTTTGGGATGCCAGAAGACTATGGAT
GGGAAGGAGAGTAACAAGAATGGTTCAGCGGGGGCAATCCCTTCTTGTTG
CTTGAAAGCAAGGGCTTCAGCCCCAGAGCTTGATGCCAAATGCCACTCCA
CTGTTGTTTCTGGGTGGTTTTCAGAATCTCAGTCTACCTCTGATAAAACT
GGCAAAACAATGTACTTCAACAATCCAATGTGGCCAGGAGAGGCCCATTC
ATTGAAAGTAAAAGAAATTTTATTCAAGGGAAAGTCTGAGTACCAAGAGG
TCCTGGTTTTTGAGTCATTGGCATATGGGAAAGTGCTTGTTCTTGATGGA
ATTGTTCAACTAACGGAGAAAGATGAATGTGCTTACCAGGAGATGATAGC
TCATCTTCCCCTTTGTTCGATTCCATCTCCGAAAACCGTTCTAGTTGTTG
GTGGTGGTGATGGTGGTGTTCTTAGGGAGATTTCTCGTCACGACTCTGTT
GAGCTTATTGATATATGTGAGAT
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