CX294963

Overview
NameCX294963
Unique NameCX294963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length523
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig602 contig Ccv1_Contig602:1..523. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_LEPBP (Spermidine synthase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=speE PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.347e-13
Identity = 33/95 (34.74%), Postives = 59/95 (62.11%), Query Frame = 3
Query:  237 GEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            G A S +V + +   +S +Q++ +FE+ ++G++  LDG+  +T KDE +Y EMIAH+P+ S P+P++            RE+ +H SV+ + +CE
Sbjct:   14 GRAVSYRVTKTIESLQSPFQKIDIFETQSFGRMFTLDGVTMVTNKDEHSYHEMIAHIPMMSHPNPESVLVIGGGDGGTVREVLKHPSVKEVVLCE 108          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_LEPBA (Spermidine synthase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=speE PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.347e-13
Identity = 33/95 (34.74%), Postives = 59/95 (62.11%), Query Frame = 3
Query:  237 GEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            G A S +V + +   +S +Q++ +FE+ ++G++  LDG+  +T KDE +Y EMIAH+P+ S P+P++            RE+ +H SV+ + +CE
Sbjct:   14 GRAVSYRVTKTIESLQSPFQKIDIFETQSFGRMFTLDGVTMVTNKDEHSYHEMIAHIPMMSHPNPESVLVIGGGDGGTVREVLKHPSVKEVVLCE 108          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_HYDS0 (Spermidine synthase OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=speE PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.347e-13
Identity = 37/93 (39.78%), Postives = 57/93 (61.29%), Query Frame = 3
Query:  246 HSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVE---LIDI 515
            H   + +IL++GKS+YQE+ V ES  +GK+L+LDG+VQ TEK+E  Y EM+ H  + +  +P+             RE+ +H SV+   L+DI
Sbjct:   17 HCYGISKILYEGKSKYQEIQVVESHYFGKILILDGVVQFTEKNEFFYHEMLTHPVMFAHKNPQNVLIIGGGDGGILREVLKHKSVKKAVLVDI 109          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_ERWCT (Spermidine synthase OS=Erwinia carotovora subsp. atroseptica GN=speE PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.347e-13
Identity = 35/88 (39.77%), Postives = 54/88 (61.36%), Query Frame = 3
Query:  258 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            V  +L+  K+++Q++++FE+ A G+V+ LDG+VQ TE+DE  Y EM+ H+PL S  + K             RE+SRH  VE I + E
Sbjct:   21 VDRVLYHEKTDHQDLIIFENDALGRVMALDGVVQTTERDEFIYHEMLTHVPLLSHGNAKRVLIIGGGDGGMLREVSRHHGVEQITMVE 108          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_YERE8 (Spermidine synthase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=speE PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.090e-12
Identity = 33/88 (37.50%), Postives = 55/88 (62.50%), Query Frame = 3
Query:  258 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            V+ +L++ K+E+Q++++FE+   G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE+SRH ++E I + E
Sbjct:   21 VENVLYREKTEHQDLVIFENPVLGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVE 108          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_PECCP (Spermidine synthase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=speE PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.090e-12
Identity = 35/88 (39.77%), Postives = 54/88 (61.36%), Query Frame = 3
Query:  258 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            V  +L+  K+++Q++++FE+ A G+V+ LDG+VQ TE+DE  Y EM+ H+PL S  + K             RE+SRH  VE I + E
Sbjct:   21 VDRVLYHEKTDHQDLIIFENDALGRVMALDGVVQTTERDEFIYHEMLTHVPLLSHGNAKRVLIIGGGDGGMLREVSRHHGVEHITMVE 108          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_ESCF3 (Spermidine synthase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=speE PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.090e-12
Identity = 33/88 (37.50%), Postives = 55/88 (62.50%), Query Frame = 3
Query:  258 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            V  +L+  K+++Q++++FE+ A+G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE++RH +VE I + E
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKDVLIIGGGDGAMLREVTRHKNVESITMVE 108          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_CLOD6 (Spermidine synthase OS=Clostridium difficile (strain 630) GN=speE PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.090e-12
Identity = 36/91 (39.56%), Postives = 56/91 (61.54%), Query Frame = 3
Query:  249 SLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            S+KV + LF+GKS++Q + VF+S  +GK L +DG++ +T KDE  Y EMI H+P+ +  + K             RE+SR+  +E ID+ E
Sbjct:   16 SIKVNKHLFEGKSQFQRIDVFDSDEFGKFLTIDGLMMVTYKDEFIYHEMITHVPMATNLNIKKVLVIGGGDGGTVRELSRYPQIEKIDMVE 106          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_CITK8 (Spermidine synthase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=speE PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.090e-12
Identity = 33/88 (37.50%), Postives = 55/88 (62.50%), Query Frame = 3
Query:  258 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            V  +L+  K+++Q++++FE+ A+G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE++RH +VE I + E
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVETITMVE 108          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_YERPY (Spermidine synthase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=speE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.424e-12
Identity = 33/88 (37.50%), Postives = 55/88 (62.50%), Query Frame = 3
Query:  258 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            V+ +L++ K+E+Q++++FE+   G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE+SRH ++E I + E
Sbjct:   21 VENVLYREKTEHQDLVIFENPELGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVE 108          
The following BLAST results are available for this feature:
BLAST of CX294963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
SPEE_LEPBP8.347e-1334.74Spermidine synthase OS=Leptospira biflexa serovar ... [more]
SPEE_LEPBA8.347e-1334.74Spermidine synthase OS=Leptospira biflexa serovar ... [more]
SPEE_HYDS08.347e-1339.78Spermidine synthase OS=Hydrogenobaculum sp. (strai... [more]
SPEE_ERWCT8.347e-1339.77Spermidine synthase OS=Erwinia carotovora subsp. a... [more]
SPEE_YERE81.090e-1237.50Spermidine synthase OS=Yersinia enterocolitica ser... [more]
SPEE_PECCP1.090e-1239.77Spermidine synthase OS=Pectobacterium carotovorum ... [more]
SPEE_ESCF31.090e-1237.50Spermidine synthase OS=Escherichia fergusonii (str... [more]
SPEE_CLOD61.090e-1239.56Spermidine synthase OS=Clostridium difficile (stra... [more]
SPEE_CITK81.090e-1237.50Spermidine synthase OS=Citrobacter koseri (strain ... [more]
SPEE_YERPY1.424e-1237.50Spermidine synthase OS=Yersinia pseudotuberculosis... [more]

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Properties
Property NameValue
Genbank descriptionC05065B02SK DroRLeaf1 Citrus clementina cDNA clone C05065B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294963 ID=CX294963; Name=CX294963; organism=Citrus clementina; type=EST; length=523bp
ATATGGAGGGCGGCGAAGGAAAAGGTTTGGGATGCCAGAAGACTATGGAT
GGGAAGGAGAGTAACAAGAATGGTTCAGCGGGGGCAATCCCTTCTTGTTG
CTTGAAAGCAAGGGCTTCAGCCCCAGAGCTTGATGCCAAATGCCACTCCA
CTGTTGTTTCTGGGTGGTTTTCAGAATCTCAGTCTACCTCTGATAAAACT
GGCAAAACAATGTACTTCAACAATCCAATGTGGCCAGGAGAGGCCCATTC
ATTGAAAGTAAAAGAAATTTTATTCAAGGGAAAGTCTGAGTACCAAGAGG
TCCTGGTTTTTGAGTCATTGGCATATGGGAAAGTGCTTGTTCTTGATGGA
ATTGTTCAACTAACGGAGAAAGATGAATGTGCTTACCAGGAGATGATAGC
TCATCTTCCCCTTTGTTCGATTCCATCTCCGAAAACCGTTCTAGTTGTTG
GTGGTGGTGATGGTGGTGTTCTTAGGGAGATTTCTCGTCACGACTCTGTT
GAGCTTATTGATATATGTGAGAT
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