CX294963

Overview
NameCX294963
Unique NameCX294963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length523
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig602 contig Ccv1_Contig602:1..523. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_YERPS (Spermidine synthase OS=Yersinia pseudotuberculosis GN=speE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.424e-12
Identity = 33/88 (37.50%), Postives = 55/88 (62.50%), Query Frame = 3 
Query:  258 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            V+ +L++ K+E+Q++++FE+   G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE+SRH ++E I + E
Sbjct:   21 VENVLYREKTEHQDLVIFENPELGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVE 108
[Close]
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_YERPB (Spermidine synthase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=speE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.424e-12
Identity = 33/88 (37.50%), Postives = 55/88 (62.50%), Query Frame = 3 
Query:  258 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            V+ +L++ K+E+Q++++FE+   G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE+SRH ++E I + E
Sbjct:   21 VENVLYREKTEHQDLVIFENPELGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVE 108
[Close]
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_YERP3 (Spermidine synthase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=speE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.424e-12
Identity = 33/88 (37.50%), Postives = 55/88 (62.50%), Query Frame = 3 
Query:  258 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            V+ +L++ K+E+Q++++FE+   G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE+SRH ++E I + E
Sbjct:   21 VENVLYREKTEHQDLVIFENPELGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVE 108
[Close]
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_SHISS (Spermidine synthase OS=Shigella sonnei (strain Ss046) GN=speE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.424e-12
Identity = 33/88 (37.50%), Postives = 55/88 (62.50%), Query Frame = 3 
Query:  258 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            V  +L+  K+++Q++++FE+ A+G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE++RH +VE I + E
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVE 108
[Close]
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_SHIFL (Spermidine synthase OS=Shigella flexneri GN=speE PE=3 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 1.424e-12
Identity = 33/88 (37.50%), Postives = 55/88 (62.50%), Query Frame = 3 
Query:  258 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            V  +L+  K+++Q++++FE+ A+G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE++RH +VE I + E
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVE 108
[Close]
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_SHIF8 (Spermidine synthase OS=Shigella flexneri serotype 5b (strain 8401) GN=speE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.424e-12
Identity = 33/88 (37.50%), Postives = 55/88 (62.50%), Query Frame = 3 
Query:  258 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            V  +L+  K+++Q++++FE+ A+G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE++RH +VE I + E
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVE 108
[Close]
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_SHIDS (Spermidine synthase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=speE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.424e-12
Identity = 33/88 (37.50%), Postives = 55/88 (62.50%), Query Frame = 3 
Query:  258 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            V  +L+  K+++Q++++FE+ A+G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE++RH +VE I + E
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVE 108
[Close]
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_SHIBS (Spermidine synthase OS=Shigella boydii serotype 4 (strain Sb227) GN=speE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.424e-12
Identity = 33/88 (37.50%), Postives = 55/88 (62.50%), Query Frame = 3 
Query:  258 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            V  +L+  K+++Q++++FE+ A+G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE++RH +VE I + E
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVE 108
[Close]
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_SHIB3 (Spermidine synthase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=speE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.424e-12
Identity = 33/88 (37.50%), Postives = 55/88 (62.50%), Query Frame = 3 
Query:  258 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            V  +L+  K+++Q++++FE+ A+G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE++RH +VE I + E
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVE 108
[Close]
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_ECOUT (Spermidine synthase OS=Escherichia coli (strain UTI89 / UPEC) GN=speE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.424e-12
Identity = 33/88 (37.50%), Postives = 55/88 (62.50%), Query Frame = 3 
Query:  258 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            V  +L+  K+++Q++++FE+ A+G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE++RH +VE I + E
Sbjct:   21 VDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVE 108
The following BLAST results are available for this feature:
BLAST of CX294963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
SPEE_YERPS1.424e-1237.50Spermidine synthase OS=Yersinia pseudotuberculosis... [more]
SPEE_YERPB1.424e-1237.50Spermidine synthase OS=Yersinia pseudotuberculosis... [more]
SPEE_YERP31.424e-1237.50Spermidine synthase OS=Yersinia pseudotuberculosis... [more]
SPEE_SHISS1.424e-1237.50Spermidine synthase OS=Shigella sonnei (strain Ss0... [more]
SPEE_SHIFL1.424e-1237.50Spermidine synthase OS=Shigella flexneri GN=speE P... [more]
SPEE_SHIF81.424e-1237.50Spermidine synthase OS=Shigella flexneri serotype ... [more]
SPEE_SHIDS1.424e-1237.50Spermidine synthase OS=Shigella dysenteriae seroty... [more]
SPEE_SHIBS1.424e-1237.50Spermidine synthase OS=Shigella boydii serotype 4 ... [more]
SPEE_SHIB31.424e-1237.50Spermidine synthase OS=Shigella boydii serotype 18... [more]
SPEE_ECOUT1.424e-1237.50Spermidine synthase OS=Escherichia coli (strain UT... [more]

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Properties
Property NameValue
Genbank descriptionC05065B02SK DroRLeaf1 Citrus clementina cDNA clone C05065B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294963 ID=CX294963; Name=CX294963; organism=Citrus clementina; type=EST; length=523bp
ATATGGAGGGCGGCGAAGGAAAAGGTTTGGGATGCCAGAAGACTATGGAT
GGGAAGGAGAGTAACAAGAATGGTTCAGCGGGGGCAATCCCTTCTTGTTG
CTTGAAAGCAAGGGCTTCAGCCCCAGAGCTTGATGCCAAATGCCACTCCA
CTGTTGTTTCTGGGTGGTTTTCAGAATCTCAGTCTACCTCTGATAAAACT
GGCAAAACAATGTACTTCAACAATCCAATGTGGCCAGGAGAGGCCCATTC
ATTGAAAGTAAAAGAAATTTTATTCAAGGGAAAGTCTGAGTACCAAGAGG
TCCTGGTTTTTGAGTCATTGGCATATGGGAAAGTGCTTGTTCTTGATGGA
ATTGTTCAACTAACGGAGAAAGATGAATGTGCTTACCAGGAGATGATAGC
TCATCTTCCCCTTTGTTCGATTCCATCTCCGAAAACCGTTCTAGTTGTTG
GTGGTGGTGATGGTGGTGTTCTTAGGGAGATTTCTCGTCACGACTCTGTT
GAGCTTATTGATATATGTGAGAT
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