CX294975

Overview
NameCX294975
Unique NameCX294975
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294975 vs. ExPASy Swiss-Prot
Match: ILVH_ARCFU (Probable acetolactate synthase small subunit OS=Archaeoglobus fulgidus GN=ilvH PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.039e-17
Identity = 48/103 (46.60%), Postives = 70/103 (67.96%), Query Frame = 3
Query:  285 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNV--DKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEVTIL 587
            +HTI+V V ++ G++ R+AG+F RRG+NIESL VG     D +  TIVV G ++V+ QV++QLNKL+  IKV +I+ E  VEREL LI+++       E+  L
Sbjct:    2 KHTIAVLVENKPGVLARVAGLFRRRGFNIESLTVGTTERDDLSRMTIVVEGDDKVVEQVIKQLNKLIETIKVSEIT-ESSVERELCLIRVHAPPEKRGEIVEL 103          
BLAST of CX294975 vs. ExPASy Swiss-Prot
Match: ILVH_MYCLE (Acetolactate synthase small subunit OS=Mycobacterium leprae GN=ilvH PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.030e-16
Identity = 48/99 (48.48%), Postives = 65/99 (65.66%), Query Frame = 3
Query:  288 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEV 578
            HT+SV V D  G++ R+A +F+RRG+NIESLAVG    K +   TIVVS  E  L QV +QL+KL+NVIKV +   +  + REL LIK+  +  T  +V
Sbjct:    7 HTLSVLVEDTPGVLARVAALFSRRGFNIESLAVGATECKTMSRMTIVVSAEETPLEQVTKQLHKLINVIKVVEQEADNSLSRELALIKVRAEAGTRSQV 105          
BLAST of CX294975 vs. ExPASy Swiss-Prot
Match: ILVH_AQUAE (Acetolactate synthase small subunit OS=Aquifex aeolicus GN=ilvH PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.295e-16
Identity = 45/97 (46.39%), Postives = 68/97 (70.10%), Query Frame = 3
Query:  264 ITASKVKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKL 548
            I   +V++H I+V V +E G++ RIA + A +GYNIE L+VG   +K +   TI V G + V+ QVV+QL +L++ +KV D+++ PHVEREL LIK+
Sbjct:   20 IRKGQVRKHIITVKVRNEMGVLARIATLIAGKGYNIEGLSVGETHEKGISRMTIEVIGDDIVIEQVVKQLRRLIDTLKVSDLTDVPHVERELALIKV 116          
BLAST of CX294975 vs. ExPASy Swiss-Prot
Match: ILVH_BUCBP (Acetolactate synthase small subunit OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=ilvH PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.720e-16
Identity = 40/102 (39.22%), Postives = 70/102 (68.63%), Query Frame = 3
Query:  279 VKRHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEV 578
            +K   +S+ + +ESG ++R+ G+F++RGYNIES+ V    D ++   TI   G ++V+ Q+ +QL+KL++V+KV +I +E H +RE+MLIK+N     + +V
Sbjct:    1 MKHRILSILLENESGALSRVVGLFSQRGYNIESITVAPTEDLSISKITIQTFGDKKVIEQIGKQLHKLIDVLKVTEIEDEEHFKREIMLIKINNTYDQYRKV 102          
BLAST of CX294975 vs. ExPASy Swiss-Prot
Match: ILVH_SALTY (Acetolactate synthase isozyme 3 small subunit OS=Salmonella typhimurium GN=ilvH PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.139e-15
Identity = 42/90 (46.67%), Postives = 63/90 (70.00%), Query Frame = 3
Query:  285 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKL 548
            R  +SV + +ESG ++R+ G+F++RGYNIESL V    D  L   TI   G E+VL Q+ +QL+KLV+V++V ++    HVERE+ML+K+
Sbjct:    2 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQGAHVEREIMLVKI 91          
BLAST of CX294975 vs. ExPASy Swiss-Prot
Match: ILVH_ECOLI (Acetolactate synthase isozyme 3 small subunit OS=Escherichia coli (strain K12) GN=ilvH PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 1.139e-15
Identity = 42/90 (46.67%), Postives = 63/90 (70.00%), Query Frame = 3
Query:  285 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKL 548
            R  +SV + +ESG ++R+ G+F++RGYNIESL V    D  L   TI   G E+VL Q+ +QL+KLV+V++V ++    HVERE+ML+K+
Sbjct:    2 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQGAHVEREIMLVKI 91          
BLAST of CX294975 vs. ExPASy Swiss-Prot
Match: ILVH_METTH (Probable acetolactate synthase small subunit OS=Methanobacterium thermoautotrophicum GN=ilvH PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.487e-15
Identity = 41/106 (38.68%), Postives = 67/106 (63.21%), Query Frame = 3
Query:  288 HTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEVTILYASL 599
            H IS  V  + G++ R+AG+F RRG+NIE++ VG +    +   TI+  G +RVL Q+ +QLNKL++VIKV D+     V+REL ++K++  + +     I Y ++
Sbjct:    9 HIISALVEHKPGVLQRVAGLFTRRGFNIENITVGESETPGIARMTIIARGDDRVLEQITKQLNKLIDVIKVRDLEPAATVKRELCMVKVHAPSESERSEIIQYTNI 114          
BLAST of CX294975 vs. ExPASy Swiss-Prot
Match: ILVH_BUCAP (Acetolactate synthase small subunit OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ilvH PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.066e-13
Identity = 36/90 (40.00%), Postives = 62/90 (68.89%), Query Frame = 3
Query:  285 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKL 548
            R  +SV + +ESG ++R+ G+F++RGYNIE++ V    D +L   TI   G E+ + Q+ +QL+KL++V++V  +    H+ERE+ML+K+
Sbjct:    2 RRILSVLLENESGALSRVIGLFSQRGYNIETITVAPTEDPSLSKMTIQTIGNEKSIEQIEKQLHKLIDVLRVIKVGQNSHIEREIMLLKV 91          
BLAST of CX294975 vs. ExPASy Swiss-Prot
Match: ILVH_BACSU (Acetolactate synthase small subunit OS=Bacillus subtilis GN=ilvH PE=3 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.818e-13
Identity = 43/102 (42.16%), Postives = 65/102 (63.73%), Query Frame = 3
Query:  285 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVG----LNVDKALFTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEV 578
            +  I++ V + SG++NRI G+F +R YNIES+ VG      V +  F + V G E  + Q+ +QLNK ++V+KV DI+N+  V+REL LIK+    ST  E+
Sbjct:    2 KRIITLTVVNRSGVLNRITGLFTKRHYNIESITVGHTETAGVSRITFVVHVEG-ENDVEQLTKQLNKQIDVLKVTDITNQSIVQRELALIKVVSAPSTRTEI 102          
BLAST of CX294975 vs. ExPASy Swiss-Prot
Match: ILVH_HAEIN (Acetolactate synthase small subunit OS=Haemophilus influenzae GN=ilvH PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.375e-13
Identity = 40/100 (40.00%), Postives = 64/100 (64.00%), Query Frame = 3
Query:  285 RHTISVFVGDESGIINRIAGVFARRGYNIESLAVGLNVDKAL--FTIVVSGTERVLRQVVEQLNKLVNVIKVEDISNEPHVERELMLIKLNGDTSTWPEV 578
            R  +SV + +ESG ++R+ G+F++R +NIESL V    D  L   TI   G  + L Q+ +QL+KLV+V KV ++S + H+ERE++L K+    S+  E+
Sbjct:    2 RRILSVLLENESGALSRVVGLFSQRAFNIESLTVAPTDDPTLSRMTIEAVGDAQALEQIEKQLHKLVDVFKVVNLSEQEHIEREIVLAKVRAVGSSRDEI 101          
The following BLAST results are available for this feature:
BLAST of CX294975 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
ILVH_ARCFU6.039e-1746.60Probable acetolactate synthase small subunit OS=Ar... [more]
ILVH_MYCLE1.030e-1648.48Acetolactate synthase small subunit OS=Mycobacteri... [more]
ILVH_AQUAE2.295e-1646.39Acetolactate synthase small subunit OS=Aquifex aeo... [more]
ILVH_BUCBP8.720e-1639.22Acetolactate synthase small subunit OS=Buchnera ap... [more]
ILVH_SALTY1.139e-1546.67Acetolactate synthase isozyme 3 small subunit OS=S... [more]
ILVH_ECOLI1.139e-1546.67Acetolactate synthase isozyme 3 small subunit OS=E... [more]
ILVH_METTH1.487e-1538.68Probable acetolactate synthase small subunit OS=Me... [more]
ILVH_BUCAP1.066e-1340.00Acetolactate synthase small subunit OS=Buchnera ap... [more]
ILVH_BACSU1.818e-1342.16Acetolactate synthase small subunit OS=Bacillus su... [more]
ILVH_HAEIN2.375e-1340.00Acetolactate synthase small subunit OS=Haemophilus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05065C02SK DroRLeaf1 Citrus clementina cDNA clone C05065C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294975 ID=CX294975; Name=CX294975; organism=Citrus clementina; type=EST; length=703bp
GAGGGTTGTTATGCTGCTGTCTGCTGTGAACTTCTCTCTGGCTAATAATA
ATGGCGGCTACTATGACGCCCTACCCGAAACTGAATTTGAGTCACTGTTT
TATCACCAAAAGCTGTGATTTTGTGCTGTTTTGGAGGCCACCATCGCAAG
GGAGGACTAGTTTCAGCAGTTCTGCTGAAGTCTCTTCAAAGAAACTCCAA
TTGGTCACTGCTAGCGGCAGCAGTTCTAACAATGCTCTCCCTGTTACTCA
GTCCGTGCCTCCTATCACTGCTTCCAAGGTGAAACGCCACACAATTTCAG
TGTTTGTTGGTGACGAGAGTGGAATAATAAACAGAATTGCTGGTGTTTTC
GCTAGGCGTGGTTACAACATTGAGTCCCTTGCTGTCGGTTTGAATGTGGA
CAAGGCTCTCTTTACCATAGTTGTGTCTGGAACTGAAAGGGTTTTGCGAC
AAGTTGTGGAACAACTTAACAAGCTTGTGAACGTCATAAAGGTAGAAGAC
ATCTCAAATGAGCCACATGTAGAGCGTGAACTGATGCTTATAAAACTTAA
TGGTGATACTAGTACCTGGCCTGAGGTAACAATTCTATATGCTTCTTTAT
GCATTCTTCATAAGAATAATTTAAATCACAAAATCAATCTTCTGGCAGAT
TCTATTCTGCAAAGGATTCTTCCGCCCTGAAAAGGAAGCTGTTCTAGTAA
TTG
back to top