CX294978

Overview
NameCX294978
Unique NameCX294978
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294978 vs. ExPASy Swiss-Prot
Match: SUFC_ECOLI (Probable ATP-dependent transporter sufC OS=Escherichia coli (strain K12) GN=sufC PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.325e-46
Identity = 98/175 (56.00%), Postives = 125/175 (71.43%), Query Frame = 1
Query:  181 IAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPELGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALEM 705
            ++   + IL+G++L V+ GEVHAIMG NGSGKSTLS  L G  DYEVT G+V FKG++LL + PE+R+  G+FM+FQ PVEIPGV+N  FL  A NA R   GQ  L   +F   +  K+  L M  D L R+VN GFSGGE+KRN+ILQ+AVL  +L ILDE DSGLD+DAL++
Sbjct:    9 VSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKV 183          
BLAST of CX294978 vs. ExPASy Swiss-Prot
Match: V296_BACSU (Vegetative protein 296 OS=Bacillus subtilis GN=yurY PE=1 SV=3)

HSP 1 Score: 182.185 bits (461), Expect = 2.499e-45
Identity = 93/170 (54.71%), Postives = 123/170 (72.35%), Query Frame = 1
Query:  196 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPELGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALEM 705
            +EILKGVNL +  GE HA+MG NG+GKSTLS  ++GHP YEVT+GS+   G+++LEME +ER+ AGLF++ Q P EI GV N DFL  A NARR +    E+  ++F   +   +E L M  +   R +NEGFSGGE+KRNEILQL ++   +AILDEIDSGLD+DAL++
Sbjct:   18 KEILKGVNLEIKGGEFHAVMGPNGTGKSTLSAAIMGHPKYEVTKGSITLDGKDVLEMEVDERAQAGLFLAMQYPSEISGVTNADFLRSAINARREE--GDEISLMKFIRKMDENMEFLEMDPEMAQRYLNEGFSGGEKKRNEILQLMMIEPKIAILDEIDSGLDIDALKV 185          
BLAST of CX294978 vs. ExPASy Swiss-Prot
Match: Y285_STRP1 (Probable ABC transporter ATP-binding protein SPy_0285/M5005_Spy0242 OS=Streptococcus pyogenes serotype M1 GN=SPy_0285 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.889e-43
Identity = 88/170 (51.76%), Postives = 121/170 (71.18%), Query Frame = 1
Query:  196 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPELGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALEM 705
            +EILKGVNL +  GEV AIMG NG+GKSTLS  ++G+P+YEVT+G ++  G N+L++E +ER+  GLF++ Q P EIPG+ N +F+  A NA   K  + ++   +F   L  K+  L MK +   R +NEGFSGGE+KRNEILQL +L    A+LDEIDSGLD+DAL++
Sbjct:   16 KEILKGVNLTLKTGEVAAIMGPNGTGKSTLSAAIMGNPNYEVTQGQILLDGVNILDLEVDERARLGLFLAMQYPSEIPGITNAEFMRAAMNA--GKADEDKISVRDFITKLDEKMALLGMKEEMAERYLNEGFSGGEKKRNEILQLLMLEPKFALLDEIDSGLDIDALKV 183          
BLAST of CX294978 vs. ExPASy Swiss-Prot
Match: Y273_STRP8 (Probable ABC transporter ATP-binding protein spyM18_0273 OS=Streptococcus pyogenes serotype M18 GN=spyM18_0273 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.889e-43
Identity = 88/170 (51.76%), Postives = 121/170 (71.18%), Query Frame = 1
Query:  196 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPELGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALEM 705
            +EILKGVNL +  GEV AIMG NG+GKSTLS  ++G+P+YEVT+G ++  G N+L++E +ER+  GLF++ Q P EIPG+ N +F+  A NA   K  + ++   +F   L  K+  L MK +   R +NEGFSGGE+KRNEILQL +L    A+LDEIDSGLD+DAL++
Sbjct:   16 KEILKGVNLTLKTGEVAAIMGPNGTGKSTLSAAIMGNPNYEVTQGQILLDGVNILDLEVDERARLGLFLAMQYPSEIPGITNAEFMRAAMNA--DKADEDKISVRDFITKLDEKMALLGMKEEMAERYLNEGFSGGEKKRNEILQLLMLEPKFALLDEIDSGLDIDALKV 183          
BLAST of CX294978 vs. ExPASy Swiss-Prot
Match: Y273_STRP6 (Probable ABC transporter ATP-binding protein M6_Spy0273 OS=Streptococcus pyogenes serotype M6 GN=M6_Spy0273 PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.889e-43
Identity = 88/170 (51.76%), Postives = 121/170 (71.18%), Query Frame = 1
Query:  196 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPELGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALEM 705
            +EILKGVNL +  GEV AIMG NG+GKSTLS  ++G+P+YEVT+G ++  G N+L++E +ER+  GLF++ Q P EIPG+ N +F+  A NA   K  + ++   +F   L  K+  L MK +   R +NEGFSGGE+KRNEILQL +L    A+LDEIDSGLD+DAL++
Sbjct:   16 KEILKGVNLTLKTGEVAAIMGPNGTGKSTLSAAIMGNPNYEVTQGQILLDGVNILDLEVDERARLGLFLAMQYPSEIPGITNAEFMRAAMNA--GKADEDKISVRDFITKLDEKMALLGMKEEMAERYLNEGFSGGEKKRNEILQLLMLEPKFALLDEIDSGLDIDALKV 183          
BLAST of CX294978 vs. ExPASy Swiss-Prot
Match: Y208_STRP3 (Probable ABC transporter ATP-binding protein SpyM3_0208/SPs0214 OS=Streptococcus pyogenes serotype M3 GN=SpyM3_0208 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.889e-43
Identity = 88/170 (51.76%), Postives = 121/170 (71.18%), Query Frame = 1
Query:  196 QEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPELGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALEM 705
            +EILKGVNL +  GEV AIMG NG+GKSTLS  ++G+P+YEVT+G ++  G N+L++E +ER+  GLF++ Q P EIPG+ N +F+  A NA   K  + ++   +F   L  K+  L MK +   R +NEGFSGGE+KRNEILQL +L    A+LDEIDSGLD+DAL++
Sbjct:   16 KEILKGVNLTLKTGEVAAIMGPNGTGKSTLSAAIMGNPNYEVTQGQILLDGVNILDLEVDERARLGLFLAMQYPSEIPGITNAEFMRAAMNA--GKADEDKISVRDFITKLDEKMALLGMKEEMAERYLNEGFSGGEKKRNEILQLLMLEPKFALLDEIDSGLDIDALKV 183          
BLAST of CX294978 vs. ExPASy Swiss-Prot
Match: Y035_METJA (Uncharacterized ABC transporter ATP-binding protein MJ0035 OS=Methanocaldococcus jannaschii GN=MJ0035 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.432e-26
Identity = 66/170 (38.82%), Postives = 103/170 (60.59%), Query Frame = 1
Query:  181 IAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPELGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDV 690
            +    +EILKGVNL V E E+HAI+G NG+GKSTL+  ++G   Y+ T+G ++FKG ++++    ER+  G+ +++Q P    G+   ++L +  N + +K    E+   +    L  KL  L     +L+R V+E  SGGERKR E+  +  +  DLAILDE DSG+D+
Sbjct:   14 VYRGNREILKGVNLTVEENEIHAIIGPNGAGKSTLAYTIMGISGYKPTKGRIIFKGVDIIDKNITERARMGMTLAWQEPARFEGIKVKNYLMLGMNEKYKK--DKEIAEEKIREAL--KLVNLD-PDKYLDRYVDETLSGGERKRIELASIICMEPDLAILDEPDSGIDI 178          
BLAST of CX294978 vs. ExPASy Swiss-Prot
Match: YKFD_BACSU (Putative oligopeptide transport ATP-binding protein ykfD OS=Bacillus subtilis GN=ykfD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 61/194 (31.44%), Postives = 93/194 (47.94%), Query Frame = 1
Query:  148 PLLQVTGLTAVIAESKQEILK---GVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAG--LFMSFQSPVEI--PGVNNIDF------LHMAYNARRRKLGQPELGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDV 690
            PLL+V+ L       K+  +K   GV   + EGE   ++G++G GKSTL +VL+    Y+ TEGSV ++G NL  +  +E+      L M FQ P     P +   +       +H  YN  + +L             +   LE + +  DF +R  +E FSGG+R+R  I +   L  +  + DE  S LDV
Sbjct:    5 PLLEVSQLKMHFDAGKKRTVKAVDGVTFQIREGETFGLVGESGCGKSTLGRVLMRL--YQPTEGSVTYRGTNLHALSEKEQFAFNRKLQMIFQDPYASLNPRMTVREIILEPMEIHNLYNTHKARL-----------LVVDELLEAVGLHPDFGSRYPHE-FSGGQRQRIGIARALSLNPEFIVADEPISALDV 184          
BLAST of CX294978 vs. ExPASy Swiss-Prot
Match: RBSA_BACHD (Ribose import ATP-binding protein rbsA OS=Bacillus halodurans GN=rbsA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.084e-11
Identity = 56/186 (30.11%), Postives = 90/186 (48.39%), Query Frame = 1
Query:  151 LLQVTGLTAVIAESKQEILKGVNLLVNEGEVHAIMGKNGSGKSTLSKVLVGHPDYEVTEGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVNNIDFLHMAYNARRRKLGQPELGPIEFYAYLYPKLERLSMKTDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGL---DVDAL 699
            ++++TG+      S   +LK V+  + +GE+HA+MG+NG+GKSTL K+L G   YE   G+V  KG  +    P+E    GL +  Q    +P +   + L +       K G   +   E       KL  L +K     R  N   S G+++  EI +  +  AD+ I+DE  + L   ++D L
Sbjct:    2 IVEMTGIHKSF--SGNPVLKDVSFTLEKGEIHALMGENGAGKSTLMKILTG--IYERDSGTVKIKGREVHYKHPKEAEADGLAVIHQELNILPELTVAENLFVGKERTYGKTGW--IKSKEMNRLAEEKLAELGLKVKGTERAGN--LSVGKQQLIEIAKALMTNADIIIMDEPTAALTDREIDTL 179          
The following BLAST results are available for this feature:
BLAST of CX294978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
SUFC_ECOLI1.325e-4656.00Probable ATP-dependent transporter sufC OS=Escheri... [more]
V296_BACSU2.499e-4554.71Vegetative protein 296 OS=Bacillus subtilis GN=yur... [more]
Y285_STRP18.889e-4351.76Probable ABC transporter ATP-binding protein SPy_0... [more]
Y273_STRP88.889e-4351.76Probable ABC transporter ATP-binding protein spyM1... [more]
Y273_STRP68.889e-4351.76Probable ABC transporter ATP-binding protein M6_Sp... [more]
Y208_STRP38.889e-4351.76Probable ABC transporter ATP-binding protein SpyM3... [more]
Y035_METJA4.432e-2638.82Uncharacterized ABC transporter ATP-binding protei... [more]
YKFD_BACSU1.808e-1131.44Putative oligopeptide transport ATP-binding protei... [more]
RBSA_BACHD3.084e-1130.11Ribose import ATP-binding protein rbsA OS=Bacillus... [more]

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Properties
Property NameValue
Genbank descriptionC05065C05SK DroRLeaf1 Citrus clementina cDNA clone C05065C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294978 ID=CX294978; Name=CX294978; organism=Citrus clementina; type=EST; length=728bp
GTGTTTACTCTTCCCGCCCTTCCCCTTCTCTGTCGCCGGTCAAACTACCA
TCGTCACCATCTATCTCTCAACCGCGTAACAGCTGCCCTCTCCGCCGTCG
ATTCTCCTTTGAAATCTTCCTCCGACGGTCAGGATGAGAAAAGCCAGCCT
CTGCTTCAAGTCACAGGCTTAACGGCCGTGATCGCAGAGTCCAAGCAGGA
AATTCTCAAGGGCGTCAATCTCTTGGTCAACGAAGGAGAGGTTCATGCGA
TCATGGGAAAGAACGGTTCTGGGAAGAGCACTCTTTCAAAGGTTCTGGTT
GGGCATCCGGATTATGAAGTGACAGAAGGGAGTGTCGTGTTTAAAGGGGA
GAATCTTCTAGAAATGGAGCCAGAAGAACGGTCACTTGCTGGCCTTTTTA
TGAGTTTCCAGTCTCCAGTTGAGATCCCGGGAGTCAACAATATTGACTTC
CTTCACATGGCTTATAATGCTCGTAGAAGAAAACTTGGTCAGCCTGAACT
TGGACCAATTGAGTTTTATGCTTACTTGTACCCTAAACTAGAACGGTTGA
GCATGAAGACTGACTTTCTTAATAGAAATGTCAATGAAGGATTTAGCGGT
GGTGAAAGGAAACGCAACGAAATTTTACAGCTTGCGGTTTTGGGAGCAGA
CTTGGCTATATTAGATGAAATCGATTCGGGGTTGGATGTTGATGCACTAG
AGATGTAGCAAAGCAGTGATGGGCTTTG
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