CX294980

Overview
NameCX294980
Unique NameCX294980
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: ATD1A_DANRE (ATPase family AAA domain-containing protein 1-A OS=Danio rerio GN=atad1a PE=2 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 6.703e-49
Identity = 94/188 (50.00%), Postives = 133/188 (70.74%), Query Frame = 2
Query:   11 RIAKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAA 574
            ++ +P KG+LL+GPPG GKT++AKA A  +G  FIN+  S++T KW+GE +K   AVFSLA KI P +IF+DE+DS L  R +  +HEA   MK +FM  WDGL T +  +++V+ ATNRP D+D A++RR+P    V LP+A  R +IL++IL+ E+LS  ++   IA+ ++GYSGSDLK LC  AA
Sbjct:  124 KLLQPPKGVLLYGPPGCGKTLIAKATAKASGCRFINLQASTLTDKWYGESQKLTAAVFSLAVKIQPCIIFLDEIDSFLRNRSSM-DHEATAMMKAQFMSLWDGLDTGENSQVMVMGATNRPQDVDAAILRRMPTAFHVGLPNAAQREEILRLILSGENLSNAINLKEIASQSEGYSGSDLKELCRDAA 310          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: SPAST_RAT (Spastin OS=Rattus norvegicus GN=Spast PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.754e-49
Identity = 100/190 (52.63%), Postives = 139/190 (73.16%), Query Frame = 2
Query:   23 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSP--DVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 586
            P +G+LLFGPPG GKTMLAKAVA E+ A F NIS +S+TSK+ GEGEK V+A+F++A ++ PS+IF+DEVDS+L  R   GEH+A R++K EF++ +DG+++   +R+LV+ ATNRP +LDEAV+RR  +R+ V+LP+   R  +L+ +L K+  SP    +   +A MTDGYSGSDL  L   AA  PI
Sbjct:  339 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERRE-GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQG-SPLTQKELAQLARMTDGYSGSDLTALAKDAALGPI 526          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: SPAST_MOUSE (Spastin OS=Mus musculus GN=Spast PE=2 SV=3)

HSP 1 Score: 193.741 bits (491), Expect = 8.754e-49
Identity = 100/190 (52.63%), Postives = 139/190 (73.16%), Query Frame = 2
Query:   23 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSP--DVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 586
            P +G+LLFGPPG GKTMLAKAVA E+ A F NIS +S+TSK+ GEGEK V+A+F++A ++ PS+IF+DEVDS+L  R   GEH+A R++K EF++ +DG+++   +R+LV+ ATNRP +LDEAV+RR  +R+ V+LP+   R  +L+ +L K+  SP    +   +A MTDGYSGSDL  L   AA  PI
Sbjct:  372 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERRE-GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQG-SPLTQKELAQLARMTDGYSGSDLTALAKDAALGPI 559          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: SPAST_HUMAN (Spastin OS=Homo sapiens GN=SPAST PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.754e-49
Identity = 100/190 (52.63%), Postives = 139/190 (73.16%), Query Frame = 2
Query:   23 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSP--DVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 586
            P +G+LLFGPPG GKTMLAKAVA E+ A F NIS +S+TSK+ GEGEK V+A+F++A ++ PS+IF+DEVDS+L  R   GEH+A R++K EF++ +DG+++   +R+LV+ ATNRP +LDEAV+RR  +R+ V+LP+   R  +L+ +L K+  SP    +   +A MTDGYSGSDL  L   AA  PI
Sbjct:  374 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERRE-GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQG-SPLTQKELAQLARMTDGYSGSDLTALAKDAALGPI 561          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: SPAST_CHICK (Spastin OS=Gallus gallus GN=SPAST PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.754e-49
Identity = 100/190 (52.63%), Postives = 140/190 (73.68%), Query Frame = 2
Query:   23 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSP--DVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 586
            P +G+LLFGPPG GKTMLAKAVA E+ A F NIS +S+TSK+ GEGEK V+A+F++A ++ PS+IF+DEVDS+L  R   GEH+A R++K EF++ +DG+++   +RILV+ ATNRP +LD+AV+RR  +R+ V+LP+   R  +L+ +L+K+  SP    +   +A MTDGYSGSDL  L   AA  PI
Sbjct:  371 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERRE-GEHDASRRLKTEFLIEFDGVQSSGEDRILVMGATNRPQELDDAVLRRFTKRVYVSLPNEETRLILLKNLLSKQG-SPLTQKELAQLARMTDGYSGSDLTALVKDAALGPI 558          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: SPAST_ANOGA (Spastin OS=Anopheles gambiae GN=spas PE=3 SV=5)

HSP 1 Score: 193.741 bits (491), Expect = 8.754e-49
Identity = 101/191 (52.88%), Postives = 139/191 (72.77%), Query Frame = 2
Query:   23 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-RTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSP--DVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 586
            P KG+LLFGPPG GKT+LA+AVATE  A F +IS +++TSK+ G+GEK V+A+F++A ++ PS+IF+DEVDS+L  R +  EHEA R++K EF+V +DGL    + +RI+V+AATNRP +LDEA +RR P+R+ V LPD   R  +L+ +L K+  SP  D D   +A +T+GYSGSDL  L   AA  PI
Sbjct:  535 PAKGLLLFGPPGNGKTLLARAVATECSATFFSISAATLTSKYVGDGEKLVRALFAVARELQPSIIFIDEVDSVLSERSS-NEHEATRRLKTEFLVQFDGLPANSEADRIVVMAATNRPQELDEAALRRFPKRVYVTLPDRDTRELLLRRLLQKQG-SPLSDADLAHLAQLTEGYSGSDLTALARDAALEPI 723          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: SPAST_PIG (Spastin (Fragment) OS=Sus scrofa GN=SPAST PE=2 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.143e-48
Identity = 99/190 (52.11%), Postives = 139/190 (73.16%), Query Frame = 2
Query:   23 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSP--DVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 586
            P +G+LLFGPPG GKTMLAKAVA E+ A F NIS +S+TSK+ GEGEK V+A+F++A ++ PS+IF+DEVDS+L R    GEH+A R++K EF++ +DG+++   +R+LV+ ATNRP +LDEAV+RR  +R+ V+LP+   R  +L+ +L K+  SP    +   +A +TDGYSGSDL  L   AA  PI
Sbjct:  371 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLL-RERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQG-SPLTQKELAQLARLTDGYSGSDLTALAKDAALGPI 558          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: SPAST_DROYA (Spastin OS=Drosophila yakuba GN=spas PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.143e-48
Identity = 102/190 (53.68%), Postives = 136/190 (71.58%), Query Frame = 2
Query:   23 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-RTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVD-FDAIANMTDGYSGSDLKNLCVTAAHRPI 586
            P KG+LLFGPPG GKT+LA+AVATE  A F+NIS +S+TSK+ G+GEK V+A+F++A  + PS+IF+DEVDS+L  R +  EHEA R++K EF+V +DGL    D +RI+VLAATNRP +LDEA +RR  +R+ V+LPD   R  +L  +L K+    D +    +A +TDGYSGSDL  L   AA  PI
Sbjct:  515 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSS-SEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPI 703          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: SPAST_DROSE (Spastin OS=Drosophila sechellia GN=spas PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.143e-48
Identity = 102/190 (53.68%), Postives = 136/190 (71.58%), Query Frame = 2
Query:   23 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-RTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVD-FDAIANMTDGYSGSDLKNLCVTAAHRPI 586
            P KG+LLFGPPG GKT+LA+AVATE  A F+NIS +S+TSK+ G+GEK V+A+F++A  + PS+IF+DEVDS+L  R +  EHEA R++K EF+V +DGL    D +RI+VLAATNRP +LDEA +RR  +R+ V+LPD   R  +L  +L K+    D +    +A +TDGYSGSDL  L   AA  PI
Sbjct:  515 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSS-SEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPI 703          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: SPAST_DROME (Spastin OS=Drosophila melanogaster GN=spas PE=1 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.143e-48
Identity = 102/190 (53.68%), Postives = 136/190 (71.58%), Query Frame = 2
Query:   23 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-RTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVD-FDAIANMTDGYSGSDLKNLCVTAAHRPI 586
            P KG+LLFGPPG GKT+LA+AVATE  A F+NIS +S+TSK+ G+GEK V+A+F++A  + PS+IF+DEVDS+L  R +  EHEA R++K EF+V +DGL    D +RI+VLAATNRP +LDEA +RR  +R+ V+LPD   R  +L  +L K+    D +    +A +TDGYSGSDL  L   AA  PI
Sbjct:  515 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSS-SEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPI 703          
The following BLAST results are available for this feature:
BLAST of CX294980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 391
Match NameE-valueIdentityDescription
ATD1A_DANRE6.703e-4950.00ATPase family AAA domain-containing protein 1-A OS... [more]
SPAST_RAT8.754e-4952.63Spastin OS=Rattus norvegicus GN=Spast PE=2 SV=1[more]
SPAST_MOUSE8.754e-4952.63Spastin OS=Mus musculus GN=Spast PE=2 SV=3[more]
SPAST_HUMAN8.754e-4952.63Spastin OS=Homo sapiens GN=SPAST PE=1 SV=1[more]
SPAST_CHICK8.754e-4952.63Spastin OS=Gallus gallus GN=SPAST PE=2 SV=1[more]
SPAST_ANOGA8.754e-4952.88Spastin OS=Anopheles gambiae GN=spas PE=3 SV=5[more]
SPAST_PIG1.143e-4852.11Spastin (Fragment) OS=Sus scrofa GN=SPAST PE=2 SV=... [more]
SPAST_DROYA1.143e-4853.68Spastin OS=Drosophila yakuba GN=spas PE=3 SV=1[more]
SPAST_DROSE1.143e-4853.68Spastin OS=Drosophila sechellia GN=spas PE=3 SV=1[more]
SPAST_DROME1.143e-4853.68Spastin OS=Drosophila melanogaster GN=spas PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionC05065C07SK DroRLeaf1 Citrus clementina cDNA clone C05065C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294980 ID=CX294980; Name=CX294980; organism=Citrus clementina; type=EST; length=750bp
GATTCGGCCGAGGATTGCCAAGCCTTGTAAGGGCATACTTTTGTTTGGAC
CTCCTGGAACAGGGAAGACCATGCTCGCAAAAGCCGTTGCAACTGAAGCT
GGTGCAAATTTCATCAACATTTCAATGTCAAGTATCACATCTAAGTGGTT
TGGTGAGGGGGAGAAGTATGTGAAAGCTGTCTTCTCACTAGCAAGTAAAA
TTGCACCTAGTGTTATATTTGTTGATGAGGTTGATAGCATGTTGGGCCGG
AGAGAAAATCCAGGGGAGCATGAGGCCATGCGGAAGATGAAAAATGAATT
TATGGTGAACTGGGATGGCCTGCGGACAAAGGATACAGAACGAATTCTGG
TGCTTGCAGCCACAAATAGACCTTTTGACCTTGATGAAGCTGTCATTAGA
AGGCTTCCACGCAGGTTGATGGTAAATTTGCCAGATGCTCCTAATAGAGC
GAAGATACTACAGGTTATTTTGGCAAAGGAGGATTTGTCTCCTGATGTTG
ATTTTGATGCAATTGCAAACATGACAGATGGATATTCTGGAAGTGACCTT
AAGAATCTCTGTGTGACTGCGGCACACCGTCCGATTAAAGAGATATTGGA
AAAAGAAAAAAAGGAAAGAGCTGCTGCGATGGCAGAAGGTAAGCCTGCTC
CAGCTTTGAGTGGGTGTGCAGATATACGGCCTCTAAACATGGATGACTTT
AATATGCTCATGAGCGGGTATGCGCGAGTGTTTCATCCGAGTCGGTAACA
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