CX294980

Overview
NameCX294980
Unique NameCX294980
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: SPAST_DROGR (Spastin OS=Drosophila grimshawi GN=spas PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.143e-48
Identity = 102/190 (53.68%), Postives = 136/190 (71.58%), Query Frame = 2
Query:   23 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-RTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVD-FDAIANMTDGYSGSDLKNLCVTAAHRPI 586
            P KG+LLFGPPG GKT+LA+AVATE  A F+NIS +S+TSK+ G+GEK V+A+F++A  + PS+IF+DEVDS+L  R +  EHEA R++K EF+V +DGL    D +RI+VLAATNRP +LDEA +RR  +R+ V+LPD   R  +L  +L K+    D D    +A +T+GYSGSDL  L   AA  PI
Sbjct:  539 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSS-NEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDVQTRELLLNRLLQKQGSPLDSDALGRLAKITEGYSGSDLTALAKDAALEPI 727          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: SPAST_DROER (Spastin OS=Drosophila erecta GN=spas PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.143e-48
Identity = 102/190 (53.68%), Postives = 136/190 (71.58%), Query Frame = 2
Query:   23 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-RTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVD-FDAIANMTDGYSGSDLKNLCVTAAHRPI 586
            P KG+LLFGPPG GKT+LA+AVATE  A F+NIS +S+TSK+ G+GEK V+A+F++A  + PS+IF+DEVDS+L  R +  EHEA R++K EF+V +DGL    D +RI+VLAATNRP +LDEA +RR  +R+ V+LPD   R  +L  +L K+    D +    +A +TDGYSGSDL  L   AA  PI
Sbjct:  515 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSS-SEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPI 703          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: SPAST_DROAN (Spastin OS=Drosophila ananassae GN=spas PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.950e-48
Identity = 102/190 (53.68%), Postives = 135/190 (71.05%), Query Frame = 2
Query:   23 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-RTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVD-FDAIANMTDGYSGSDLKNLCVTAAHRPI 586
            P KG+LLFGPPG GKT+LA+AVATE  A F+NIS +S+TSK+ G+GEK V+A+F++A  + PS+IF+DEVDS+L  R +  EHEA R++K EF+V +DGL    D +RI+VLAATNRP +LDEA +RR  +R+ V+LPD   R  +L  +L K+    D +    +A  TDGYSGSDL  L   AA  PI
Sbjct:  527 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSS-NEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLSRLLQKQGSPLDTEALRRLAKTTDGYSGSDLTALAKDAALEPI 715          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: SPAST_BOVIN (Spastin OS=Bos taurus GN=SPAST PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.950e-48
Identity = 99/190 (52.11%), Postives = 139/190 (73.16%), Query Frame = 2
Query:   23 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSP--DVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 586
            P +G+LLFGPPG GKTMLAKAVA E+ A F NIS +S+TSK+ GEGEK V+A+F++A ++ PS+IF+DEVDS+L  R   GEH+A R++K EF++ +DG+++   +R+LV+ ATNRP +LDEAV+RR  +R+ V+LP+   R  +L+ +L K+  SP    +   +A MT+GYSGSDL  L   AA  PI
Sbjct:  372 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERRE-GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFTKRVYVSLPNEETRLLLLKNLLCKQG-SPLTQKELAQLARMTNGYSGSDLTALAKDAALGPI 559          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: SPAST_DROWI (Spastin OS=Drosophila willistoni GN=spas PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.327e-48
Identity = 101/190 (53.16%), Postives = 136/190 (71.58%), Query Frame = 2
Query:   23 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-RTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVD-FDAIANMTDGYSGSDLKNLCVTAAHRPI 586
            P KG+LLFGPPG GKT+LA+AVATE  A F+NIS +S+TSK+ G+GEK V+A+F++A  + PS+IF+DEVDS+L  R +  EHEA R++K EF+V +DGL    D +RI+VLAATNRP +LDEA +RR  +R+ V+LPD   R  +L  +L K+    D +    +A +T+GYSGSDL  L   AA  PI
Sbjct:  534 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSS-NEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITEGYSGSDLTALAKDAALEPI 722          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: KATL1_MOUSE (Katanin p60 ATPase-containing subunit A-like 1 OS=Mus musculus GN=Katnal1 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.327e-48
Identity = 93/192 (48.44%), Postives = 136/192 (70.83%), Query Frame = 2
Query:   14 IAKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-----RTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAA 574
            I +P KG+L+ GPPGTGKTMLAKAVATE G  F N+S S++TSK+ GE EK V+ +F +A   AP+ IF+DE+DS+  RR    EHEA R++K+E ++  DG+         ++ ++VLAATN P+D+DEA+ RRL +R+ + LP A  RA++L++ L + +L PDV  + IA+ T+GYSG+D+ N+C  A+
Sbjct:  235 IRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKISLREVELDPDVHLEDIADKTEGYSGADITNICRDAS 426          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: SPAST_DROMO (Spastin OS=Drosophila mojavensis GN=spas PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.345e-48
Identity = 101/190 (53.16%), Postives = 137/190 (72.11%), Query Frame = 2
Query:   23 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-RTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDA-IANMTDGYSGSDLKNLCVTAAHRPI 586
            P KG+LLFGPPG GKT+LA+AVATE  A F+NIS +S+TSK+ G+GEK V+A+F++A  + PS+IF+DEVDS+L  R +  EHEA R++K EF+V +DGL    + +RI+VLAATNRP +LDEA +RR  +R+ V+LP+   R  +L  +L K+    D +  A +A +TDGYSGSDL  L   AA  PI
Sbjct:  522 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHLQPSIIFIDEVDSLLSERSS-NEHEASRRLKTEFLVEFDGLPGNPEGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPEVQTRELLLSRLLQKQGSPLDTEALARLAKITDGYSGSDLTALAKDAALEPI 710          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: FIGL1_XENTR (Fidgetin-like protein 1 OS=Xenopus tropicalis GN=fignl1 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.345e-48
Identity = 98/189 (51.85%), Postives = 135/189 (71.43%), Query Frame = 2
Query:   23 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 586
            P KGILLFGPPGTGKT++ K +A ++GA F +IS SS+TSKW GEGEK V+A+F++A    P+VIF+DE+DS+L +R   GEHE+ R++K EF+V  DG  T   +RILV+ ATNRP ++DEA  RRL +RL + LP+A  R +I+  ++AKE  S  + + +AI    DG+SG+D+  LC  AA  PI
Sbjct:  415 PPKGILLFGPPGTGKTLIGKCIACQSGATFFSISASSLTSKWVGEGEKMVRALFTVARCHQPAVIFIDEIDSLLSQR-GEGEHESSRRIKTEFLVQLDGATTSSDDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVVSLMAKEHCSLAEQEVEAIVLQADGFSGADMTQLCREAALGPI 602          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: KATL1_RAT (Katanin p60 ATPase-containing subunit A-like 1 OS=Rattus norvegicus GN=Katnal1 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.674e-48
Identity = 92/192 (47.92%), Postives = 135/192 (70.31%), Query Frame = 2
Query:   14 IAKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-----RTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAA 574
            I +P KG+L+ GPPGTGKTMLAKAVATE G  F N+S S++TSK+ GE EK V+ +F +A   AP+ IF+DE+DS+  RR    EHEA R++K+E ++  DG+         ++ ++VLAATN P+D+DEA+ RRL +R+ + LP A  RA++L++ L + +L PD+  + IA  T+GYSG+D+ N+C  A+
Sbjct:  235 IRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKISLREVELDPDIHLEDIAEKTEGYSGADITNICRDAS 426          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: SPAST_XENTR (Spastin OS=Xenopus tropicalis GN=spast PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 9.679e-48
Identity = 97/200 (48.50%), Postives = 144/200 (72.00%), Query Frame = 2
Query:    2 IRPRI----AKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE-DLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 586
            IRP +      P +G+LLFGPPG GKTMLAKAVA E+ A F NIS +S+TSK+ GEGEK V+A+FS+A ++ PS+IF+DEVDS+L  R   GEH+A R++K EF++ +DG+++   +R+LV+ ATNRP +LD+AV+RR  +R+ V+LP+   R  +L+ +L+K+ +   + +   ++ +T+GYSGSD+  L   AA  PI
Sbjct:  350 IRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFSVARELQPSIIFIDEVDSLLCERRE-GEHDASRRLKTEFLIEFDGVQSGGDDRVLVMGATNRPQELDDAVLRRFTKRVYVSLPNEETRLLLLKNLLSKQGNPLNEKELTQLSRLTEGYSGSDITALAKDAALGPI 548          
The following BLAST results are available for this feature:
BLAST of CX294980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 391
Match NameE-valueIdentityDescription
SPAST_DROGR1.143e-4853.68Spastin OS=Drosophila grimshawi GN=spas PE=3 SV=1[more]
SPAST_DROER1.143e-4853.68Spastin OS=Drosophila erecta GN=spas PE=3 SV=1[more]
SPAST_DROAN1.950e-4853.68Spastin OS=Drosophila ananassae GN=spas PE=3 SV=1[more]
SPAST_BOVIN1.950e-4852.11Spastin OS=Bos taurus GN=SPAST PE=2 SV=1[more]
SPAST_DROWI3.327e-4853.16Spastin OS=Drosophila willistoni GN=spas PE=3 SV=1[more]
KATL1_MOUSE3.327e-4848.44Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
SPAST_DROMO4.345e-4853.16Spastin OS=Drosophila mojavensis GN=spas PE=3 SV=1[more]
FIGL1_XENTR4.345e-4851.85Fidgetin-like protein 1 OS=Xenopus tropicalis GN=f... [more]
KATL1_RAT5.674e-4847.92Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
SPAST_XENTR9.679e-4848.50Spastin OS=Xenopus tropicalis GN=spast PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05065C07SK DroRLeaf1 Citrus clementina cDNA clone C05065C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294980 ID=CX294980; Name=CX294980; organism=Citrus clementina; type=EST; length=750bp
GATTCGGCCGAGGATTGCCAAGCCTTGTAAGGGCATACTTTTGTTTGGAC
CTCCTGGAACAGGGAAGACCATGCTCGCAAAAGCCGTTGCAACTGAAGCT
GGTGCAAATTTCATCAACATTTCAATGTCAAGTATCACATCTAAGTGGTT
TGGTGAGGGGGAGAAGTATGTGAAAGCTGTCTTCTCACTAGCAAGTAAAA
TTGCACCTAGTGTTATATTTGTTGATGAGGTTGATAGCATGTTGGGCCGG
AGAGAAAATCCAGGGGAGCATGAGGCCATGCGGAAGATGAAAAATGAATT
TATGGTGAACTGGGATGGCCTGCGGACAAAGGATACAGAACGAATTCTGG
TGCTTGCAGCCACAAATAGACCTTTTGACCTTGATGAAGCTGTCATTAGA
AGGCTTCCACGCAGGTTGATGGTAAATTTGCCAGATGCTCCTAATAGAGC
GAAGATACTACAGGTTATTTTGGCAAAGGAGGATTTGTCTCCTGATGTTG
ATTTTGATGCAATTGCAAACATGACAGATGGATATTCTGGAAGTGACCTT
AAGAATCTCTGTGTGACTGCGGCACACCGTCCGATTAAAGAGATATTGGA
AAAAGAAAAAAAGGAAAGAGCTGCTGCGATGGCAGAAGGTAAGCCTGCTC
CAGCTTTGAGTGGGTGTGCAGATATACGGCCTCTAAACATGGATGACTTT
AATATGCTCATGAGCGGGTATGCGCGAGTGTTTCATCCGAGTCGGTAACA
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