CX294980

Overview
NameCX294980
Unique NameCX294980
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: SPAST_CAEEL (Probable spastin homolog spas-1 OS=Caenorhabditis elegans GN=spas-1 PE=1 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 1.183e-45
Identity = 95/194 (48.97%), Postives = 130/194 (67.01%), Query Frame = 2
Query:   14 IAKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDV---DFDAIANMTDGYSGSDLKNLCVTAAHRPI 586
            + +P KGILLFGPPG GKT+LAKAVA E+   F NIS SS+TSKW G+ EK ++ +F +A    PS+IF+DE+DS+L  R    + E  R+MK EF+V +DG  +   +RILV+ ATNRP +LD+AV+RR P+R+M+NLPD   R +++   L K ++   +   D   IA+ T G+S SDL  LC  AA  PI
Sbjct:  268 LRQPVKGILLFGPPGNGKTLLAKAVAGESKQMFFNISASSLTSKWVGDSEKTIRGLFQIARNAQPSIIFIDEIDSILCERSEK-DAEVSRRMKTEFLVQFDGATSSADDRILVIGATNRPHELDDAVLRRFPKRIMLNLPDEEARKELITKTLKKHNMMDGLISSDIRYIASNTSGFSNSDLVALCKEAAMVPI 460          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: KTNA1_DANRE (Katanin p60 ATPase-containing subunit A1 OS=Danio rerio GN=katna1 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.545e-45
Identity = 91/191 (47.64%), Postives = 131/191 (68.59%), Query Frame = 2
Query:   14 IAKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL----RTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAA 574
            I +P KG+L+ GPPGTGKT+LAKAVATE    F N+S S++TSK+ GE EK V+ +F +A   AP+ IF+DE+DS+  RR    EHEA R++K E +V  DG+        ++ ++VLAATN P+D+DEA+ RRL +R+ + LP A  R  +L++ L + DL+ DV+ D IA   +GYSG+D+ N+C  A+
Sbjct:  233 IRRPWKGVLMVGPPGTGKTLLAKAVATECRTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGTSENDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRVDLLKINLKELDLANDVNMDKIAEQMEGYSGADITNVCRDAS 423          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: KTNA1_SALSA (Katanin p60 ATPase-containing subunit A1 OS=Salmo salar GN=katna1 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.018e-45
Identity = 91/192 (47.40%), Postives = 132/192 (68.75%), Query Frame = 2
Query:   14 IAKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-----RTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAA 574
            I +P KG+L+ GPPGTGKT+LAKAVATE    F N+S S++TSK+ GE EK V+ +F +A   AP+ IF+DE+DSM  RR    EHEA R++K E +V  DG+         ++ ++VLAATN P+D+DEA+ RRL +R+ + LP A  R ++L++ L + +L+ DVD   IA  ++GYSG+D+ N+C  A+
Sbjct:  233 IRRPWKGVLMVGPPGTGKTLLAKAVATECRTTFFNVSSSTLTSKYRGESEKLVRILFEMARFYAPTTIFIDEIDSMCSRRGTSEEHEASRRVKAELLVQMDGVGGASDNEDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRVELLRINLKELELANDVDMAKIAEQSEGYSGADITNVCRDAS 424          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: MEI1_CAEEL (Meiotic spindle formation protein mei-1 OS=Caenorhabditis elegans GN=mei-1 PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.636e-45
Identity = 85/188 (45.21%), Postives = 135/188 (71.81%), Query Frame = 2
Query:   14 IAKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-DTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAA 574
            +  P K ++L GPPGTGKT++A+A+A+E+ + F  +S + ++SKW G+ EK V+ +F LA   APS+IF+DE+D++ G+R N GEHEA R++K+EF+V  DG + K D+ R+ VLAATN P++LDEA+ RR  +R+ + LPD   R K+++  +     S ++++D +A  T+G+SG+D+ +LC TAA
Sbjct:  222 LRSPWKAMVLAGPPGTGKTLIARAIASESSSTFFTVSSTDLSSKWRGDSEKIVRLLFELARFYAPSIIFIDEIDTLGGQRGNSGEHEASRRVKSEFLVQMDGSQNKFDSRRVFVLAATNIPWELDEALRRRFEKRIFIPLPDIDARKKLIEKSMEGTPKSDEINYDDLAARTEGFSGADVVSLCRTAA 409          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: KTNA1_XENTR (Katanin p60 ATPase-containing subunit A1 OS=Xenopus tropicalis GN=katna1 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.496e-45
Identity = 91/192 (47.40%), Postives = 132/192 (68.75%), Query Frame = 2
Query:   14 IAKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-----RTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAA 574
            I +P KG+L+ GPPGTGKT+LAKAVATE    F NIS S++TSK+ GE EK V+ +F +A   AP+ IF+DE+DS+  RR    EHEA R++K E +V  DG+         ++ ++VLAATN P+D+DEA+ RRL +R+ + LP A  R ++L++ L + +L+ DV+ + IA   DGYSG+D+ N+C  A+
Sbjct:  239 IRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNISSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGASENEDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRINLKELELADDVNIECIAENMDGYSGADITNVCRDAS 430          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: KTNA1_XENLA (Katanin p60 ATPase-containing subunit (Fragment) OS=Xenopus laevis GN=katna1 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.496e-45
Identity = 91/192 (47.40%), Postives = 132/192 (68.75%), Query Frame = 2
Query:   14 IAKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-----RTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAA 574
            I +P KG+L+ GPPGTGKT+LAKAVATE    F NIS S++TSK+ GE EK V+ +F +A   AP+ IF+DE+DS+  RR    EHEA R++K E +V  DG+         ++ ++VLAATN P+D+DEA+ RRL +R+ + LP A  R ++L++ L + +L+ DV+ + IA   DGYSG+D+ N+C  A+
Sbjct:  235 IRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNISSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGASENEDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRINLKELELADDVNIECIAENMDGYSGADITNVCRDAS 426          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: YKX4_SCHPO (Uncharacterized AAA domain-containing protein C328.04 OS=Schizosaccharomyces pombe GN=SPAC328.04 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.872e-45
Identity = 107/239 (44.77%), Postives = 144/239 (60.25%), Query Frame = 2
Query:   14 IAKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG-EHEAMRKMKNEFMVNWDGL-------RTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVIL--AKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIXXXXXXXXXXXXXXXXXXXXXXXLSGCADIRPLNMDDF 700
            + +P +G+LLFGPPGTGKTMLA+AVATE+ + F +IS SS+TSK+ GE EK V+A+F+LA K++PS+IFVDE+DS+L  R + G EHE  R++K EF++ W  L       +T D  R+LVLAATN P+ +D+A  RR  RR  + LPD   R   L  +L   K  LS + D +AI   T+ YSGSDL  L   AA  P+                        +    IRP+N+DDF
Sbjct:  488 LREPARGMLLFGPPGTGKTMLARAVATESRSVFFSISASSLTSKFLGESEKLVRALFTLAKKLSPSIIFVDEIDSLLSARSSDGNEHETSRRIKTEFLIQWSSLARAAASRQTADHPRVLVLAATNLPWCIDDAARRRFVRRTYIPLPDETTRRLHLNNLLKYQKHSLSLE-DIEAIVKATEYYSGSDLTALAKDAAMGPL---------------RSLGESLLFTKMESIRPINLDDF 710          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: MSP1_CAEEL (Mitochondrial sorting homolog OS=Caenorhabditis elegans GN=mspn-1 PE=1 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.308e-44
Identity = 88/183 (48.09%), Postives = 126/183 (68.85%), Query Frame = 2
Query:   14 IAKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLC 562
            +  P +GILL+GPPG GKT+LAKAVA  AG  FIN+ +S++T KW+GE +K   AVFS+A K  P++IF+DE+DS L  R++  +HE+   MK +FM  WDG  +   ++I+V+ ATNRP D+D A++RR+  R  V +P+A  R++IL VIL  E ++  V+   IA   +G SGSDLK +C
Sbjct:  113 LLSPPRGILLYGPPGCGKTLLAKAVARAAGCRFINLQVSNLTDKWYGESQKLAAAVFSVAQKFQPTIIFIDEIDSFLRDRQS-HDHESTAMMKAQFMTLWDGF-SSSGDQIIVMGATNRPRDVDAAILRRMTARFQVPVPNAKQRSQILNVILRNEKINNTVNLGEIAQAAEGLSGSDLKEVC 293          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: KTNA1_MACFA (Katanin p60 ATPase-containing subunit A1 OS=Macaca fascicularis GN=KATNA1 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.709e-44
Identity = 89/192 (46.35%), Postives = 132/192 (68.75%), Query Frame = 2
Query:   14 IAKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-----RTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAA 574
            I +P KG+L+ GPPGTGKT+LAKAVATE    F N+S S++TSK+ GE EK V+ +F +A   +P+ IF+DE+DS+  RR    EHEA R++K E +V  DG+         ++ ++VLAATN P+D+DEA+ RRL +R+ + LP A  R ++L++ L + +L+ DVD  +IA   +GYSG+D+ N+C  A+
Sbjct:  238 IRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLRELELADDVDLASIAENMEGYSGADITNVCRDAS 429          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: KTNA1_HUMAN (Katanin p60 ATPase-containing subunit A1 OS=Homo sapiens GN=KATNA1 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.709e-44
Identity = 89/192 (46.35%), Postives = 132/192 (68.75%), Query Frame = 2
Query:   14 IAKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-----RTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAA 574
            I +P KG+L+ GPPGTGKT+LAKAVATE    F N+S S++TSK+ GE EK V+ +F +A   +P+ IF+DE+DS+  RR    EHEA R++K E +V  DG+         ++ ++VLAATN P+D+DEA+ RRL +R+ + LP A  R ++L++ L + +L+ DVD  +IA   +GYSG+D+ N+C  A+
Sbjct:  238 IRRPWKGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYSPATIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGTSENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLRELELADDVDLASIAENMEGYSGADITNVCRDAS 429          
The following BLAST results are available for this feature:
BLAST of CX294980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 391
Match NameE-valueIdentityDescription
SPAST_CAEEL1.183e-4548.97Probable spastin homolog spas-1 OS=Caenorhabditis ... [more]
KTNA1_DANRE1.545e-4547.64Katanin p60 ATPase-containing subunit A1 OS=Danio ... [more]
KTNA1_SALSA2.018e-4547.40Katanin p60 ATPase-containing subunit A1 OS=Salmo ... [more]
MEI1_CAEEL2.636e-4545.21Meiotic spindle formation protein mei-1 OS=Caenorh... [more]
KTNA1_XENTR4.496e-4547.40Katanin p60 ATPase-containing subunit A1 OS=Xenopu... [more]
KTNA1_XENLA4.496e-4547.40Katanin p60 ATPase-containing subunit (Fragment) O... [more]
YKX4_SCHPO5.872e-4544.77Uncharacterized AAA domain-containing protein C328... [more]
MSP1_CAEEL1.308e-4448.09Mitochondrial sorting homolog OS=Caenorhabditis el... [more]
KTNA1_MACFA1.709e-4446.35Katanin p60 ATPase-containing subunit A1 OS=Macaca... [more]
KTNA1_HUMAN1.709e-4446.35Katanin p60 ATPase-containing subunit A1 OS=Homo s... [more]

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Properties
Property NameValue
Genbank descriptionC05065C07SK DroRLeaf1 Citrus clementina cDNA clone C05065C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294980 ID=CX294980; Name=CX294980; organism=Citrus clementina; type=EST; length=750bp
GATTCGGCCGAGGATTGCCAAGCCTTGTAAGGGCATACTTTTGTTTGGAC
CTCCTGGAACAGGGAAGACCATGCTCGCAAAAGCCGTTGCAACTGAAGCT
GGTGCAAATTTCATCAACATTTCAATGTCAAGTATCACATCTAAGTGGTT
TGGTGAGGGGGAGAAGTATGTGAAAGCTGTCTTCTCACTAGCAAGTAAAA
TTGCACCTAGTGTTATATTTGTTGATGAGGTTGATAGCATGTTGGGCCGG
AGAGAAAATCCAGGGGAGCATGAGGCCATGCGGAAGATGAAAAATGAATT
TATGGTGAACTGGGATGGCCTGCGGACAAAGGATACAGAACGAATTCTGG
TGCTTGCAGCCACAAATAGACCTTTTGACCTTGATGAAGCTGTCATTAGA
AGGCTTCCACGCAGGTTGATGGTAAATTTGCCAGATGCTCCTAATAGAGC
GAAGATACTACAGGTTATTTTGGCAAAGGAGGATTTGTCTCCTGATGTTG
ATTTTGATGCAATTGCAAACATGACAGATGGATATTCTGGAAGTGACCTT
AAGAATCTCTGTGTGACTGCGGCACACCGTCCGATTAAAGAGATATTGGA
AAAAGAAAAAAAGGAAAGAGCTGCTGCGATGGCAGAAGGTAAGCCTGCTC
CAGCTTTGAGTGGGTGTGCAGATATACGGCCTCTAAACATGGATGACTTT
AATATGCTCATGAGCGGGTATGCGCGAGTGTTTCATCCGAGTCGGTAACA
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