CX294980

Overview
NameCX294980
Unique NameCX294980
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: KATL2_MOUSE (Katanin p60 ATPase-containing subunit A-like 2 OS=Mus musculus GN=Katnal2 PE=2 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.497e-40
Identity = 90/199 (45.23%), Postives = 129/199 (64.82%), Query Frame = 2
Query:   14 IAKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRR--ENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE------DLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 586
            I  P KG+LL+GPPGTGKT+LAKAVATE    F NIS S+I SKW G+ EK V+ +F LA   APS IF+DE++S++ +R     GEHE   +MK E +V  DGL  +  + + VLAA+N P++LD A++RRL +R++V+LP    R  ++   L         +L   +++  ++  T+GYSGSD+K +C  AA RP+
Sbjct:  284 ILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQRGMVPGGEHEGSLRMKTELLVQMDGL-ARSEDLVFVLAASNLPWELDCAMLRRLEKRILVDLPSQEARQAMIYHWLPPVSKNHALELHTQLEYSVLSQETEGYSGSDIKLVCREAAMRPV 481          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: VPS4_DICDI (Vacuolar protein sorting-associated protein 4 OS=Dictyostelium discoideum GN=vps4 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.355e-40
Identity = 89/190 (46.84%), Postives = 128/190 (67.37%), Query Frame = 2
Query:   20 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQV-ILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 586
            KP KGILL+GPPGTGK+ LAKAVATE  + F +IS S I +KW G+ EK VK +F +A +   SVIF+DEVDS+   R N  E E+ R++K EF++  +G+   D++ ILVLAATN P+ LD A+ RR  +R+ + LP+   RAK+ Q+ I +  +     D+  +A++T+GYSGSD+ +L   A  +P+
Sbjct:  166 KPWKGILLYGPPGTGKSYLAKAVATEISSTFFSISPSDIVTKWLGDSEKLVKQLFEMAREKNNSVIFIDEVDSLCSSR-NDQESESARRIKTEFLIQMNGV-GNDSDGILVLAATNIPWGLDLAIRRRFEKRIYIGLPEPQARAKMFQIHIGSTPNTLVQADYKKLADLTEGYSGSDIGSLVKDAIMQPV 353          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: VPS4_YEAST (Vacuolar protein sorting-associated protein 4 OS=Saccharomyces cerevisiae GN=VPS4 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.688e-40
Identity = 89/196 (45.41%), Postives = 125/196 (63.78%), Query Frame = 2
Query:   20 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQV-------ILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 586
            KP  GILL+GPPGTGK+ LAKAVATEA + F ++S S + SKW GE EK VK +F++A +  PS+IF+DEVD++ G R   GE EA R++K E +V  +G+   D++ +LVL ATN P+ LD A+ RR  RR+ + LPD   R  + ++       +L KE      D+  +  MT+GYSGSD+  +   A  +PI
Sbjct:  164 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTR-GEGESEASRRIKTELLVQMNGV-GNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKE------DYRTLGAMTEGYSGSDIAVVVKDALMQPI 351          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: VPS4B_MOUSE (Vacuolar protein sorting-associated protein 4B OS=Mus musculus GN=Vps4b PE=1 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.823e-39
Identity = 90/190 (47.37%), Postives = 123/190 (64.74%), Query Frame = 2
Query:   23 PCKGILLFGPPGTGKTMLAKAVATEAG-ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 586
            P +GILLFGPPGTGK+ LAKAVATEA  + F +IS S + SKW GE EK VK +F LA +  PS+IF+DE+DS+ G R +  E EA R++K EF+V   G+   D + ILVL ATN P+ LD A+ RR  +R+ + LP+A  RA + ++ L     S  + DF  +   TDGYSG+D+  +   A  +P+
Sbjct:  166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR-SENESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPV 353          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: Y1297_ARCFU (Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus GN=AF_1297 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.830e-38
Identity = 80/183 (43.72%), Postives = 123/183 (67.21%), Query Frame = 2
Query:   20 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLC 562
            KP +GILLFGPPGTGKT+LAKAVA E+ ANFI++    + SKW GE EK+V+ +F  A ++AP VIF DE+DS+  RR   G+     ++ ++ +   DGL  ++ + ++V+AATNRP  +D A++R  RL R + +  PD   R +I ++ L  + L+ DV+ + +A  T+GYSG+D++ +C
Sbjct:  487 KPPRGILLFGPPGTGKTLLAKAVANESNANFISVKGPELLSKWVGESEKHVREMFRKARQVAPCVIFFDEIDSLAPRRGGIGDSHVTERVVSQLLTELDGL--EELKDVVVIAATNRPDMIDPALLRPGRLERHIYIPPPDKKARVEIFKIHLRGKPLADDVNIEELAEKTEGYSGADIEAVC 667          

HSP 2 Score: 149.828 bits (377), Expect = 1.450e-35
Identity = 82/188 (43.62%), Postives = 124/188 (65.96%), Query Frame = 2
Query:   20 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN-PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAA 574
            +P KG+LL+GPPGTGKT++AKAVA E  A+FI IS   I SK++GE E+ ++ +F  A + APS+IF+DE+DS+  +RE   GE E  R++  + +   DGL  +    ++V+AATNRP  +D A+ R  R  R + + +PD   R +IL++   K  L+ DVD + +A +T+G+ G+DL+ LC  AA
Sbjct:  214 EPPKGVLLYGPPGTGKTLIAKAVANEVDAHFIPISGPEIMSKYYGESEQRLREIFEEAKENAPSIIFIDEIDSIAPKREEVTGEVE--RRVVAQLLALMDGLEARGD--VIVIAATNRPDAIDPALRRPGRFDREIEIGVPDKEGRKEILEIHTRKMPLAEDVDLEELAELTNGFVGADLEALCKEAA 397          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: VPS4B_HUMAN (Vacuolar protein sorting-associated protein 4B OS=Homo sapiens GN=VPS4B PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.390e-38
Identity = 89/190 (46.84%), Postives = 122/190 (64.21%), Query Frame = 2
Query:   23 PCKGILLFGPPGTGKTMLAKAVATEAG-ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 586
            P +GILLFGPPGTGK+ LAKAVATEA  + F +IS S + SKW GE EK VK +F LA +  PS+IF+DE+DS+ G R +  E EA R++K EF+V   G+   D + ILVL ATN P+ LD A+ RR  +R+ + LP+   RA + ++ L     S  + DF  +   TDGYSG+D+  +   A  +P+
Sbjct:  166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR-SENESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPV 353          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: VPS4B_BOVIN (Vacuolar protein sorting-associated protein 4B OS=Bos taurus GN=VPS4B PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.390e-38
Identity = 89/190 (46.84%), Postives = 123/190 (64.74%), Query Frame = 2
Query:   23 PCKGILLFGPPGTGKTMLAKAVATEAG-ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 586
            P +GILLFGPPGTGK+ LAKAVATEA  + F +IS S + SKW GE EK VK +F LA +  PS+IF+DE+DS+ G R +  E EA R++K EF+V   G+   D + ILVL ATN P+ LD A+ RR  +R+ + LP+A  RA + ++ L     S  + DF  +   T+GYSG+D+  +   A  +P+
Sbjct:  166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR-SENESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFKLHLGTTQNSLTEADFRDLGKKTEGYSGADISIIVRDALMQPV 353          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: VPS4B_PONAB (Vacuolar protein sorting-associated protein 4B OS=Pongo abelii GN=VPS4B PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.076e-38
Identity = 89/190 (46.84%), Postives = 122/190 (64.21%), Query Frame = 2
Query:   23 PCKGILLFGPPGTGKTMLAKAVATEAG-ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 586
            P +GILLFGPPGTGK+ LAKAVATEA  + F +IS S + SKW GE EK VK +F LA +  PS+IF+DE+DS+ G R +  E EA R++K EF+V   G+   D + ILVL ATN P+ LD A+ RR  +R+ + LP+   RA + ++ L     S  + DF  +   TDGYSG+D+  +   A  +P+
Sbjct:  166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR-SENESEAARRIKTEFLVQMRGVGV-DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPV 353          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: VAT_THEAC (VCP-like ATPase OS=Thermoplasma acidophilum GN=vat PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.323e-38
Identity = 78/183 (42.62%), Postives = 118/183 (64.48%), Query Frame = 2
Query:   20 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLC 562
            +P KG LL+GPPG GKT+LAKAVATE+ ANFI+I    + SKW GE EK ++ +F  A ++AP+++F+DE+DS+  RR    +     ++ N+ + + DG+   +   ++V+ ATNRP  +D A++R  R  + + +  PD   R  IL+V      L+PDVD + IA  T+GY G+DL+NLC
Sbjct:  499 RPSKGFLLYGPPGVGKTLLAKAVATESNANFISIKGPEVLSKWVGESEKAIREIFKKAKQVAPAIVFLDEIDSIAPRRGTTSDSGVTERIVNQLLTSLDGIEVMN--GVVVIGATNRPDIMDPALLRAGRFDKLIYIPPPDKEARLSILKVHTKNMPLAPDVDLNDIAQRTEGYVGADLENLC 679          

HSP 2 Score: 124.405 bits (311), Expect = 6.523e-28
Identity = 69/186 (37.10%), Postives = 116/186 (62.37%), Query Frame = 2
Query:   23 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQV-----ILAKEDLSPDVDFDAIANMTDGYSGSDLKNL 559
            P KG++L+GPPGTGKT++A+AVA E+GANF++I+   I SK++G+ E+ ++ +FS A + APS+IF+DE+DS+  +RE   + E  R++  + +   DG+  K+   ++V+ ATNR   +D A+ R  R  R + + +PD   R +IL +      L   +   +   + +A+ T G+ G+DL  L
Sbjct:  223 PPKGVILYGPPGTGKTLIARAVANESGANFLSINGPEIMSKYYGQSEQKLREIFSKAEETAPSIIFIDEIDSIAPKREEV-QGEVERRVVAQLLTLMDGM--KERGHVIVIGATNRIDAIDPALRRPGRFDREIEIGVPDRNGRKEILMIHTRNMPLGMSEEEKNKFLEEMADYTYGFVGADLAAL 405          
BLAST of CX294980 vs. ExPASy Swiss-Prot
Match: Y1156_METJA (Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus jannaschii GN=MJ1156 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.004e-36
Identity = 79/187 (42.25%), Postives = 122/187 (65.24%), Query Frame = 2
Query:   20 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAA 574
            +P KG+LLFGPPGTGKT+LAKAVA E+GANFI++    I SKW GE EK ++ +F  A + AP +IF DE+D++  +R          K+ N+ +   DG+  ++ + ++V+AATNRP  +D A++R  RL R ++V +PD   R  I ++     +L+ DV+ + +A  T+GY+G+D++ LC  AA
Sbjct:  484 RPPKGVLLFGPPGTGKTLLAKAVANESGANFISVKGPEIFSKWVGESEKAIREIFRKARQSAPCIIFFDEIDAIAPKRGRDLSSAVTDKVVNQLLTELDGM--EEPKDVVVIAATNRPDIIDPALLRPGRLDRVILVPVPDEKARLDIFKIHTRSMNLAEDVNLEELAKKTEGYTGADIEALCREAA 668          

HSP 2 Score: 149.058 bits (375), Expect = 2.473e-35
Identity = 83/191 (43.46%), Postives = 122/191 (63.87%), Query Frame = 2
Query:   20 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 586
            +P KG+LL GPPGTGKT+LAKAVA EAGANF  I+   I SK+ GE E+ ++ +F  A + APS+IF+DE+D++  +R+     E  R++  + +   DGL  K   +++V+ ATNRP  LD A+ R  R  R +++ +PD   R +ILQ+      L+ DVD D +A++T G+ G+DL  LC  AA R +
Sbjct:  211 EPPKGVLLVGPPGTGKTLLAKAVANEAGANFYVINGPEIMSKYVGETEENLRKIFEEAEENAPSIIFIDEIDAIAPKRDE-ATGEVERRLVAQLLTLMDGL--KGRGQVVVIGATNRPNALDPALRRPGRFDREIVIGVPDREGRKEILQIHTRNMPLAEDVDLDYLADVTHGFVGADLAALCKEAAMRAL 398          
The following BLAST results are available for this feature:
BLAST of CX294980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 391
Match NameE-valueIdentityDescription
KATL2_MOUSE1.497e-4045.23Katanin p60 ATPase-containing subunit A-like 2 OS=... [more]
VPS4_DICDI4.355e-4046.84Vacuolar protein sorting-associated protein 4 OS=D... [more]
VPS4_YEAST5.688e-4045.41Vacuolar protein sorting-associated protein 4 OS=S... [more]
VPS4B_MOUSE2.823e-3947.37Vacuolar protein sorting-associated protein 4B OS=... [more]
Y1297_ARCFU1.830e-3843.72Cell division cycle protein 48 homolog AF_1297 OS=... [more]
VPS4B_HUMAN2.390e-3846.84Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4B_BOVIN2.390e-3846.84Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4B_PONAB4.076e-3846.84Vacuolar protein sorting-associated protein 4B OS=... [more]
VAT_THEAC5.323e-3842.62VCP-like ATPase OS=Thermoplasma acidophilum GN=vat... [more]
Y1156_METJA1.004e-3642.25Cell division cycle protein 48 homolog MJ1156 OS=M... [more]

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Properties
Property NameValue
Genbank descriptionC05065C07SK DroRLeaf1 Citrus clementina cDNA clone C05065C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294980 ID=CX294980; Name=CX294980; organism=Citrus clementina; type=EST; length=750bp
GATTCGGCCGAGGATTGCCAAGCCTTGTAAGGGCATACTTTTGTTTGGAC
CTCCTGGAACAGGGAAGACCATGCTCGCAAAAGCCGTTGCAACTGAAGCT
GGTGCAAATTTCATCAACATTTCAATGTCAAGTATCACATCTAAGTGGTT
TGGTGAGGGGGAGAAGTATGTGAAAGCTGTCTTCTCACTAGCAAGTAAAA
TTGCACCTAGTGTTATATTTGTTGATGAGGTTGATAGCATGTTGGGCCGG
AGAGAAAATCCAGGGGAGCATGAGGCCATGCGGAAGATGAAAAATGAATT
TATGGTGAACTGGGATGGCCTGCGGACAAAGGATACAGAACGAATTCTGG
TGCTTGCAGCCACAAATAGACCTTTTGACCTTGATGAAGCTGTCATTAGA
AGGCTTCCACGCAGGTTGATGGTAAATTTGCCAGATGCTCCTAATAGAGC
GAAGATACTACAGGTTATTTTGGCAAAGGAGGATTTGTCTCCTGATGTTG
ATTTTGATGCAATTGCAAACATGACAGATGGATATTCTGGAAGTGACCTT
AAGAATCTCTGTGTGACTGCGGCACACCGTCCGATTAAAGAGATATTGGA
AAAAGAAAAAAAGGAAAGAGCTGCTGCGATGGCAGAAGGTAAGCCTGCTC
CAGCTTTGAGTGGGTGTGCAGATATACGGCCTCTAAACATGGATGACTTT
AATATGCTCATGAGCGGGTATGCGCGAGTGTTTCATCCGAGTCGGTAACA
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