CX294982
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX294982 vs. ExPASy Swiss-Prot
Match: SBDS_BOVIN (Ribosome maturation protein SBDS OS=Bos taurus GN=SBDS PE=2 SV=1) HSP 1 Score: 205.682 bits (522), Expect = 2.144e-52 Identity = 106/205 (51.71%), Postives = 146/205 (71.22%), Query Frame = 2 Query: 5 VEKDLDEVLQSHTVYSNVSKGILAKSKDLISAFGTDDQTKICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNL---QGRLEILAVSVHAEGD 610 VEKDLDEVLQ+H+V+ NVSKG +AK +DLISAFGTDDQT+IC +IL KGE+QV+ KER TQ FRDIATIV K VN ET+RPYT+ +IER M +IH++V PN S+K+QALEVI++L++ I+R+ MR+ +P L EKL ++ ++ G QL ++C ++PG FR+ D L++ +G LE+L++ EGD Sbjct: 43 VEKDLDEVLQTHSVFVNVSKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVNEGKKLKEKLKPL-IKVIESEDYGQQLEIVCLIDPGCFREVDELIKKETKGKGSLEVLSLKDVEEGD 246
BLAST of CX294982 vs. ExPASy Swiss-Prot
Match: SBDS_RAT (Ribosome maturation protein SBDS OS=Rattus norvegicus GN=Sbds PE=2 SV=1) HSP 1 Score: 204.527 bits (519), Expect = 4.776e-52 Identity = 108/205 (52.68%), Postives = 146/205 (71.22%), Query Frame = 2 Query: 5 VEKDLDEVLQSHTVYSNVSKGILAKSKDLISAFGTDDQTKICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNL---QGRLEILAVSVHAEGD 610 VEKDLDEVLQ+H+V+ NVSKG +AK +DLISAFGTDDQT+IC +IL KGE+QV+ KER TQ FRDIATIV K VN ET+RPYT+ +IER M +IH++V PN S+K+QALEVI++L++ I+R+ MR+ +P L EKL + S+D S QL ++C ++PG FR+ D L++ +G LE+L++ EGD Sbjct: 43 VEKDLDEVLQTHSVFVNVSKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIKQLKEKMKIERAHMRLRFLLPVNEGKKLKEKLKPLMKVVESEDYS-QQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLSLKDVEEGD 246
BLAST of CX294982 vs. ExPASy Swiss-Prot
Match: SBDS_MOUSE (Ribosome maturation protein SBDS OS=Mus musculus GN=Sbds PE=2 SV=4) HSP 1 Score: 204.527 bits (519), Expect = 4.776e-52 Identity = 108/205 (52.68%), Postives = 146/205 (71.22%), Query Frame = 2 Query: 5 VEKDLDEVLQSHTVYSNVSKGILAKSKDLISAFGTDDQTKICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNL---QGRLEILAVSVHAEGD 610 VEKDLDEVLQ+H+V+ NVSKG +AK +DLISAFGTDDQT+IC +IL KGE+QV+ KER TQ FRDIATIV K VN ET+RPYT+ +IER M +IH++V PN S+K+QALEVI++L++ I+R+ MR+ +P L EKL + S+D S QL ++C ++PG FR+ D L++ +G LE+L++ EGD Sbjct: 43 VEKDLDEVLQTHSVFVNVSKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVNEGKKLKEKLKPLMKVVESEDYS-QQLEIVCLIDPGCFREIDELIKKETKGRGSLEVLSLKDVEEGD 246
BLAST of CX294982 vs. ExPASy Swiss-Prot
Match: SBDS_CHICK (Ribosome maturation protein SBDS OS=Gallus gallus GN=SBDS PE=2 SV=1) HSP 1 Score: 203.756 bits (517), Expect = 8.146e-52 Identity = 105/208 (50.48%), Postives = 147/208 (70.67%), Query Frame = 2 Query: 8 EKDLDEVLQSHTVYSNVSKGILAKSKDLISAFGTDDQTKICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNL---QGRLEILAVSVHAEGDTSVD 622 EKD+DEVLQ+HTV+ NVSKG +AK +DL+ AFGTDDQT+IC IL KGELQV+ KER+TQ FRDIATIV K VN ET+RPYT+ +IER M +IH++V PN S+K+QALEVIR+L++ I+R+ MR+ +P + L EKL ++ ++ QL ++C ++PG FR+ D L+R+ +G LE+L++ EGD ++ Sbjct: 44 EKDIDEVLQTHTVFVNVSKGQVAKKEDLVRAFGTDDQTEICKVILSKGELQVSDKERQTQLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIRQLKETMQIERAHMRLRFILPVKEGKKLKEKLKPL-IKVIENEDFHDQLEIVCLIDPGCFREIDELIRSETKGKGTLEVLSLKDVEEGDEKLE 250
BLAST of CX294982 vs. ExPASy Swiss-Prot
Match: SBDS_PONAB (Ribosome maturation protein SBDS OS=Pongo abelii GN=SBDS PE=2 SV=1) HSP 1 Score: 201.445 bits (511), Expect = 4.043e-51 Identity = 105/205 (51.22%), Postives = 144/205 (70.24%), Query Frame = 2 Query: 5 VEKDLDEVLQSHTVYSNVSKGILAKSKDLISAFGTDDQTKICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNL---QGRLEILAVSVHAEGD 610 VEKDLDEVLQ+H+V+ NVSKG +AK +DLISAFGTDDQT+IC +IL KGE+QV+ KER TQ FRDIATIV K VN ET+RPYT+ +IER M +IH++V N S+K+QALEVI++L++ I+R+ MR+ +P L EKL ++ ++ G QL ++C ++PG FR+ D L++ +G LE+L + EGD Sbjct: 43 VEKDLDEVLQTHSVFVNVSKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVNEGKKLKEKLKPL-IKVIESEDYGQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLNLKDVEEGD 246
BLAST of CX294982 vs. ExPASy Swiss-Prot
Match: SBDS_HUMAN (Ribosome maturation protein SBDS OS=Homo sapiens GN=SBDS PE=1 SV=4) HSP 1 Score: 201.445 bits (511), Expect = 4.043e-51 Identity = 105/205 (51.22%), Postives = 144/205 (70.24%), Query Frame = 2 Query: 5 VEKDLDEVLQSHTVYSNVSKGILAKSKDLISAFGTDDQTKICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNL---QGRLEILAVSVHAEGD 610 VEKDLDEVLQ+H+V+ NVSKG +AK +DLISAFGTDDQT+IC +IL KGE+QV+ KER TQ FRDIATIV K VN ET+RPYT+ +IER M +IH++V N S+K+QALEVI++L++ I+R+ MR+ +P L EKL ++ ++ G QL ++C ++PG FR+ D L++ +G LE+L + EGD Sbjct: 43 VEKDLDEVLQTHSVFVNVSKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVNEGKKLKEKLKPL-IKVIESEDYGQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLNLKDVEEGD 246
BLAST of CX294982 vs. ExPASy Swiss-Prot
Match: SBDS_XENLA (Ribosome maturation protein SBDS OS=Xenopus laevis GN=sbds PE=2 SV=1) HSP 1 Score: 193.741 bits (491), Expect = 8.430e-49 Identity = 103/204 (50.49%), Postives = 143/204 (70.10%), Query Frame = 2 Query: 8 EKDLDEVLQSHTVYSNVSKGILAKSKDLISAFGTDDQTKICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLR---NLQGRLEILAVSVHAEGD 610 EKDLDEVLQ+H+V+ NVSKG AK +DL+ AFGT+DQT+IC +IL KGELQV+ KER TQ FRDIATIV K VN ET+RPYT+++IER M +IH++V S+K+QAL+VI++L++ I+R+ MR+ VP ++ L EKL I S +N +L ++C ++PG FR+ D L+R +G LE+L++ EGD Sbjct: 44 EKDLDEVLQTHSVFMNVSKGQGAKKEDLLKAFGTEDQTEICKQILSKGELQVSEKERSTQLEQMFRDIATIVADKCVNPETKRPYTVNLIERAMKDIHYSVKATKSTKQQALDVIKQLKETMQIERAHMRLRFIVPAKDGKKLKEKLKPLIKHIES-ENFDQELEIVCLIDPGCFREIDELIRCETKGKGTLEVLSLKDVEEGD 246
BLAST of CX294982 vs. ExPASy Swiss-Prot
Match: SBDS_DICDI (Ribosome maturation protein SBDS OS=Dictyostelium discoideum GN=sbds PE=3 SV=2) HSP 1 Score: 191.815 bits (486), Expect = 3.203e-48 Identity = 94/211 (44.55%), Postives = 150/211 (71.09%), Query Frame = 2 Query: 2 QVEKDLDEVLQSHTVYSNVSKGILAKSKDLISAFGTDDQTKICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSL-MEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNL---QGRLEILAVSVHAEGDTSVD 622 ++EKDL+EV+Q H +++NVSKGI+AK +LI AFGTD++ +I L ILEKGELQV+ KER+ Q F+DIATIV +K VN+ETQRP +S+IE+ M ++H+++ P SSK+Q+LEVI+++ PI+R+ MR+ +T+P + +L +KL + I +D G LS++C ++PG +R D L++ +G ++I+ ++V EG+T ++ Sbjct: 42 KIEKDLNEVIQIHRIFTNVSKGIIAKKDELIKAFGTDNEQEIILLILEKGELQVSSKERDNQSEQTFKDIATIVAEKCVNTETQRPIPVSIIEKAMKDVHYSIHPTKSSKQQSLEVIKQISSVIPIQRAQMRLNITIPTKESKTLNRDKLMVLVSKIEEEDRDGGGLSIVCLVDPGSYRKIDELIKQETKGKGFIDIINLAVAKEGETKIN 252
BLAST of CX294982 vs. ExPASy Swiss-Prot
Match: SBDS_XENTR (Ribosome maturation protein SBDS OS=Xenopus tropicalis GN=sbds PE=2 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 2.076e-47 Identity = 98/204 (48.04%), Postives = 141/204 (69.12%), Query Frame = 2 Query: 8 EKDLDEVLQSHTVYSNVSKGILAKSKDLISAFGTDDQTKICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLR---NLQGRLEILAVSVHAEGD 610 EKDLDEVLQ+H+V+ NVSKG +AK +DL+ +FGT+D T+IC +IL KGELQV+ KER TQ FRDIATIV K VN ET+RPYT+++IER M +IH++V S+K+QAL+VI++L++ I+R+ MR+ +P ++ L EKL +N +L ++C ++PG FR+ D L+R +G LE+L++ EGD Sbjct: 44 EKDLDEVLQTHSVFMNVSKGQVAKKEDLLKSFGTEDPTEICKQILSKGELQVSEKERSTQLEQMFRDIATIVADKCVNPETKRPYTVNLIERAMKDIHYSVKATKSTKQQALDVIKQLKETMQIERAHMRLRFILPAKDGKKLKEKLKPL-IKHTESENFDQELEIVCLIDPGCFREIDELIRCETKGKGTLEVLSLKDVEEGD 246
BLAST of CX294982 vs. ExPASy Swiss-Prot
Match: SBDS_CAEEL (Ribosome maturation protein SBDS OS=Caenorhabditis elegans GN=sbds-1 PE=2 SV=2) HSP 1 Score: 166.007 bits (419), Expect = 1.882e-40 Identity = 85/207 (41.06%), Postives = 135/207 (65.22%), Query Frame = 2 Query: 8 EKDLDEVLQSHTVYSNVSKGILAKSKDLISAFGTDDQTKICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNL---QGRLEILAVSVHAEGDTSV 619 EKD+DEVLQ+HTV+SNVSKG L+K ++LI+AFG +DQ +IC IL+KG+LQV+ KER+ ++++ ++ VN ET+RP S+I++ + E+HF++ PN SSK+QAL+ I +L++ I+R+ M++ + +P + S+ KL + + D L ++ +EPG FR D L+RN GRLEIL++ EG+ + Sbjct: 46 EKDIDEVLQTHTVFSNVSKGQLSKKEELIAAFGIEDQLEICKIILDKGDLQVSEKERQAASDQSLKEVSQLIASMVVNPETKRPVPPSVIDKALQEMHFSLKPNRSSKQQALDAIPKLRETLKIERAKMKIRVAIPTKEAKSVHTKLKTLFSDVEVDDWQDGSLEMVGLIEPGSFRALDDLVRNETKGHGRLEILSLKDVVEGELQI 252 The following BLAST results are available for this feature:
BLAST of CX294982 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX294982 ID=CX294982; Name=CX294982; organism=Citrus clementina; type=EST; length=734bpback to top |