CX294982

Overview
NameCX294982
Unique NameCX294982
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294982 vs. ExPASy Swiss-Prot
Match: SDO1_SCHPO (Ribosome maturation protein sdo1 OS=Schizosaccharomyces pombe GN=sdo1 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.170e-32
Identity = 80/202 (39.60%), Postives = 126/202 (62.38%), Query Frame = 2
Query:    2 QVEKDLDEVLQSHTVYSNVSKGILAKSKDLISAFGTDDQTKICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQK--HFPIKRSPMRVGLTVPEQNISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRN---LQGRLEILAVS 592
            ++E DLDEVLQ H V++NVSKG +A  +DL  AFGTDD  KI LEIL+KG+ QV  KER  Q S+ +RDI + V    ++  ++RPY  S+IE+ + +  F+V  + ++K QALE I++LQ+    PI R+ MR+ + V  +   +L E+L +  A  + ++N   +   I  + PG ++  D L+RN    +G +++L +S
Sbjct:   42 KIETDLDEVLQIHNVFNNVSKGHVASRQDLKKAFGTDDIDKIILEILQKGDFQVGEKERHHQMSSTYRDIVSHVTAMCMDPNSKRPYPASIIEKALSDCGFSVSTSKTAKSQALEAIKKLQEKNEIPIVRARMRIRIVVDVKQGKALRERLRSL-ADEIEEENIDDEYECIALVIPGNYKLIDELVRNETKNRGMVQVLDMS 242          
BLAST of CX294982 vs. ExPASy Swiss-Prot
Match: SDO1_YEAST (Ribosome maturation protein SDO1 OS=Saccharomyces cerevisiae GN=SDO1 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.038e-22
Identity = 69/202 (34.16%), Postives = 115/202 (56.93%), Query Frame = 2
Query:    5 VEKDLDEVLQSHTVYSNVSKGILAKSKDLISAFGTDDQTKICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIREL--QKHFPIKRSPMRVGLTVPEQNIS-SLMEKLDAWNASIVSKDNSGSQLSLICE--MEPGLFRDCDTLLRNLQGRLEILAVSV 595
            +EKDLDEVLQ H V+ NVSKG++A  +DL   FGT +   +  EI+ KGE+Q++ KER+   +    ++ TIV  K +N  +++ Y  +MI + + E+ F+   N  +K QALE I+ L  ++  PI R+ M+V + + E +    L+EK+    AS   +          C   ++P  +RD  TL  + +G +++L ++V
Sbjct:   43 IEKDLDEVLQIHQVFMNVSKGLVANKEDLQKCFGTTNVDDVIEEIMHKGEIQLSEKERQLMLNKVNNEMLTIVSAKCINPVSKKRYPPTMIHKALQELKFSPVINKPAKLQALEAIKLLVSKQIIPIVRAKMKVKVAISEPSRQPELIEKISKLIASSPGESTKPELDPWTCTGLIDPVNYRDLMTLC-DKKGTVQVLDMAV 243          
BLAST of CX294982 vs. ExPASy Swiss-Prot
Match: SDO1_METJA (Ribosome maturation protein SDO1 homolog OS=Methanocaldococcus jannaschii GN=MJ0592 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.111e-16
Identity = 53/198 (26.77%), Postives = 99/198 (50.00%), Query Frame = 2
Query:   14 DLDEVLQSHTVYSNVSKGILAKSKDLISAFGTDDQTKICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNL-QGRLEILAVSVHAE 604
            D DE+L    V+ + SKG  A  + L   FGT D  +I  +I+ KG++Q+  K+RE     + R I TI+ + T+N +T  P+    IE+ M E+   +D   S+++Q  E++++L+K  PI+     + + +P +  S     L  + A    +      L ++ E+  G+  +    L  + +G ++   V  ++E
Sbjct:   43 DFDELLAIEVVFRDASKGEKAPEELLSKIFGTTDVKEIAKKIILKGQVQLTAKQREEIREQKKRQIITIISRNTINPQTDTPHPPHRIEKAMEELRINIDIYKSAEEQVPEIVKKLKKVLPIRFEKRDIAVKIPAEFASKAYNALYQFGAVKQEEWQPDGSLIVLIEIPSGIEAEFYAHLNKITKGNVQTKVVKKYSE 240          
BLAST of CX294982 vs. ExPASy Swiss-Prot
Match: SDO1_ARCFU (Ribosome maturation protein SDO1 homolog OS=Archaeoglobus fulgidus GN=AF_0491 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.150e-13
Identity = 46/184 (25.00%), Postives = 90/184 (48.91%), Query Frame = 2
Query:    8 EKDLDEVLQSHTVYSNVSKGILAKSKDLISAFGTDDQTKICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWNASIVSKDNSGSQLSLICEME--PGLFRDCDTLL 553
            E + +++L +  V+ +  KG  A   +L   FGTDD  +I  +I+ +GE+Q+  ++R      + + I   + + T++  T  P+  S IER + E    +D   S + Q  ++++ L+   P+K   M + + +P ++    +  L  +N   V+++      S IC M    G++ D   LL
Sbjct:   36 EVNFEDLLAAEEVFKDAKKGERASVDELRKIFGTDDVFEIARKIILEGEVQITAEQRREMLEAKRKQIINFISRNTIDPRTNAPHPPSRIERALEEAKVHIDIFKSVEAQVKDIVKALKPILPLKFEEMEIAIKIPPEHTGRAISAL--YNFGGVTREEWQRDGSWICVMRIPSGMYGDLMDLL 217          
BLAST of CX294982 vs. ExPASy Swiss-Prot
Match: SDO1_AERPE (Ribosome maturation protein SDO1 homolog OS=Aeropyrum pernix GN=APE_1167.1 PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.150e-13
Identity = 37/134 (27.61%), Postives = 77/134 (57.46%), Query Frame = 2
Query:   14 DLDEVLQSHTVYSNVSKGILAKSKDLISAFGTDDQTKICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVP 415
            DL++VL + T+Y +V KG+ A  +++  AFGT D  ++  +IL++GE+Q+  ++R      + R I + + +  ++  T RP   + IE  + E+ F ++    ++ QA+E +R + +  PI+ +   + + +P
Sbjct:   38 DLEDVLWTDTIYRDVRKGLKASPEEVKKAFGTSDPRRVAEKILKEGEIQLTEEQRRRLLEAKRRQIISYIARNAIDPTTGRPIPEARIEAALEEVRFPINLWRDAESQAVEAVRLIARVMPIRLARALLEVKIP 171          
BLAST of CX294982 vs. ExPASy Swiss-Prot
Match: SDO1_PYRAB (Ribosome maturation protein SDO1 homolog OS=Pyrococcus abyssi GN=PYRAB06080 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.707e-13
Identity = 38/140 (27.14%), Postives = 73/140 (52.14%), Query Frame = 2
Query:    8 EKDLDEVLQSHTVYSNVSKGILAKSKDLISAFGTDDQTKICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNI 427
            E  ++E+L +  V+ +  KG  A  K++   FGT D  ++   IL KGE+Q+  ++R      + R IATI+ +  V+  T  P+ +  I R M E+   VD    ++ Q  +VI+ +++  P++     + + +P + +
Sbjct:   37 EVPIEEILATPYVFKDAHKGDKASEKEMEKIFGTSDPYEVAKIILRKGEVQLTAQQRREMLEEKKRQIATIIHRHAVDPRTGYPHPVDRILRAMEEVGVRVDIFKDAEAQVQDVIKAIRRILPLRIEMKVIAVKIPSEYV 176          
BLAST of CX294982 vs. ExPASy Swiss-Prot
Match: SDO1_PYRHO (Ribosome maturation protein SDO1 homolog OS=Pyrococcus horikoshii GN=PH1552 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.454e-13
Identity = 38/137 (27.74%), Postives = 73/137 (53.28%), Query Frame = 2
Query:   17 LDEVLQSHTVYSNVSKGILAKSKDLISAFGTDDQTKICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNI 427
            ++E+L +  V+ +  KG  A  K++   FGT D  ++   IL+KGE+Q+  ++R      + R IATI+ +  V+  T  P+ +  I R M E+   VD    ++ Q  +VI+ L++  P++     + + +P + +
Sbjct:   40 IEEILATPYVFKDAHKGDKASEKEMEKIFGTSDPYEVAKIILKKGEVQLTAQQRREMLEEKKRQIATIIHKHAVDPRTGYPHPVDRILRAMEEVGVRVDIFKDAEAQVQDVIKALRRVLPLRIEMKVIAVKIPGEYV 176          
The following BLAST results are available for this feature:
BLAST of CX294982 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
SDO1_SCHPO7.170e-3239.60Ribosome maturation protein sdo1 OS=Schizosaccharo... [more]
SDO1_YEAST1.038e-2234.16Ribosome maturation protein SDO1 OS=Saccharomyces ... [more]
SDO1_METJA1.111e-1626.77Ribosome maturation protein SDO1 homolog OS=Methan... [more]
SDO1_ARCFU1.150e-1325.00Ribosome maturation protein SDO1 homolog OS=Archae... [more]
SDO1_AERPE1.150e-1327.61Ribosome maturation protein SDO1 homolog OS=Aeropy... [more]
SDO1_PYRAB5.707e-1327.14Ribosome maturation protein SDO1 homolog OS=Pyroco... [more]
SDO1_PYRHO7.454e-1327.74Ribosome maturation protein SDO1 homolog OS=Pyroco... [more]

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Properties
Property NameValue
Genbank descriptionC05065C09SK DroRLeaf1 Citrus clementina cDNA clone C05065C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294982 ID=CX294982; Name=CX294982; organism=Citrus clementina; type=EST; length=734bp
CCAAGTAGAGAAAGATTTGGATGAAGTATTGCAGTCGCACACTGTTTATT
CGAATGTGTCAAAAGGAATTCTCGCGAAGTCAAAGGATTTGATTTCAGCA
TTTGGTACTGATGATCAAACAAAAATATGTTTGGAGATTTTGGAGAAAGG
GGAGCTTCAAGTTGCTGGAAAGGAGAGGGAAACGCAGTTCTCTAATCAGT
TTCGGGATATTGCAACCATTGTTATGCAGAAGACTGTTAATTCTGAAACT
CAACGTCCTTACACTATTAGTATGATTGAGCGACTTATGCACGAAATTCA
TTTTGCTGTTGACCCTAATAGCAGCTCGAAGAAGCAGGCATTGGAAGTCA
TTCGTGAGCTTCAAAAGCATTTCCCAATAAAAAGGTCTCCAATGAGGGTG
GGACTTACTGTTCCAGAGCAAAATATTTCTTCTTTAATGGAGAAACTAGA
TGCATGGAATGCTAGCATTGTCTCCAAAGATAATTCTGGAAGTCAGCTGT
CTCTCATTTGTGAAATGGAGCCAGGTCTTTTTCGGGATTGTGATACCCTA
CTGAGGAATCTGCAGGGCAGGTTGGAAATTCTTGCAGTGTCAGTGCATGC
AGAGGGGGATACAAGTGTGGATCACTACGATGATCATGAGGATGTGCCAT
CACTCCCACCCAAGGATCTGCTGATGATGTTCTCAAACTTAGTGAGAAAA
TTGAAAACAGTCTCTCTCTTCTGGAAATGGGATA
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