CX294982
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX294982 vs. ExPASy Swiss-Prot
Match: SDO1_SCHPO (Ribosome maturation protein sdo1 OS=Schizosaccharomyces pombe GN=sdo1 PE=2 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 7.170e-32 Identity = 80/202 (39.60%), Postives = 126/202 (62.38%), Query Frame = 2 Query: 2 QVEKDLDEVLQSHTVYSNVSKGILAKSKDLISAFGTDDQTKICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQK--HFPIKRSPMRVGLTVPEQNISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRN---LQGRLEILAVS 592 ++E DLDEVLQ H V++NVSKG +A +DL AFGTDD KI LEIL+KG+ QV KER Q S+ +RDI + V ++ ++RPY S+IE+ + + F+V + ++K QALE I++LQ+ PI R+ MR+ + V + +L E+L + A + ++N + I + PG ++ D L+RN +G +++L +S Sbjct: 42 KIETDLDEVLQIHNVFNNVSKGHVASRQDLKKAFGTDDIDKIILEILQKGDFQVGEKERHHQMSSTYRDIVSHVTAMCMDPNSKRPYPASIIEKALSDCGFSVSTSKTAKSQALEAIKKLQEKNEIPIVRARMRIRIVVDVKQGKALRERLRSL-ADEIEEENIDDEYECIALVIPGNYKLIDELVRNETKNRGMVQVLDMS 242
BLAST of CX294982 vs. ExPASy Swiss-Prot
Match: SDO1_YEAST (Ribosome maturation protein SDO1 OS=Saccharomyces cerevisiae GN=SDO1 PE=1 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.038e-22 Identity = 69/202 (34.16%), Postives = 115/202 (56.93%), Query Frame = 2 Query: 5 VEKDLDEVLQSHTVYSNVSKGILAKSKDLISAFGTDDQTKICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIREL--QKHFPIKRSPMRVGLTVPEQNIS-SLMEKLDAWNASIVSKDNSGSQLSLICE--MEPGLFRDCDTLLRNLQGRLEILAVSV 595 +EKDLDEVLQ H V+ NVSKG++A +DL FGT + + EI+ KGE+Q++ KER+ + ++ TIV K +N +++ Y +MI + + E+ F+ N +K QALE I+ L ++ PI R+ M+V + + E + L+EK+ AS + C ++P +RD TL + +G +++L ++V Sbjct: 43 IEKDLDEVLQIHQVFMNVSKGLVANKEDLQKCFGTTNVDDVIEEIMHKGEIQLSEKERQLMLNKVNNEMLTIVSAKCINPVSKKRYPPTMIHKALQELKFSPVINKPAKLQALEAIKLLVSKQIIPIVRAKMKVKVAISEPSRQPELIEKISKLIASSPGESTKPELDPWTCTGLIDPVNYRDLMTLC-DKKGTVQVLDMAV 243
BLAST of CX294982 vs. ExPASy Swiss-Prot
Match: SDO1_METJA (Ribosome maturation protein SDO1 homolog OS=Methanocaldococcus jannaschii GN=MJ0592 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.111e-16 Identity = 53/198 (26.77%), Postives = 99/198 (50.00%), Query Frame = 2 Query: 14 DLDEVLQSHTVYSNVSKGILAKSKDLISAFGTDDQTKICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWNASIVSKDNSGSQLSLICEMEPGLFRDCDTLLRNL-QGRLEILAVSVHAE 604 D DE+L V+ + SKG A + L FGT D +I +I+ KG++Q+ K+RE + R I TI+ + T+N +T P+ IE+ M E+ +D S+++Q E++++L+K PI+ + + +P + S L + A + L ++ E+ G+ + L + +G ++ V ++E Sbjct: 43 DFDELLAIEVVFRDASKGEKAPEELLSKIFGTTDVKEIAKKIILKGQVQLTAKQREEIREQKKRQIITIISRNTINPQTDTPHPPHRIEKAMEELRINIDIYKSAEEQVPEIVKKLKKVLPIRFEKRDIAVKIPAEFASKAYNALYQFGAVKQEEWQPDGSLIVLIEIPSGIEAEFYAHLNKITKGNVQTKVVKKYSE 240
BLAST of CX294982 vs. ExPASy Swiss-Prot
Match: SDO1_ARCFU (Ribosome maturation protein SDO1 homolog OS=Archaeoglobus fulgidus GN=AF_0491 PE=1 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.150e-13 Identity = 46/184 (25.00%), Postives = 90/184 (48.91%), Query Frame = 2 Query: 8 EKDLDEVLQSHTVYSNVSKGILAKSKDLISAFGTDDQTKICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNISSLMEKLDAWNASIVSKDNSGSQLSLICEME--PGLFRDCDTLL 553 E + +++L + V+ + KG A +L FGTDD +I +I+ +GE+Q+ ++R + + I + + T++ T P+ S IER + E +D S + Q ++++ L+ P+K M + + +P ++ + L +N V+++ S IC M G++ D LL Sbjct: 36 EVNFEDLLAAEEVFKDAKKGERASVDELRKIFGTDDVFEIARKIILEGEVQITAEQRREMLEAKRKQIINFISRNTIDPRTNAPHPPSRIERALEEAKVHIDIFKSVEAQVKDIVKALKPILPLKFEEMEIAIKIPPEHTGRAISAL--YNFGGVTREEWQRDGSWICVMRIPSGMYGDLMDLL 217
BLAST of CX294982 vs. ExPASy Swiss-Prot
Match: SDO1_AERPE (Ribosome maturation protein SDO1 homolog OS=Aeropyrum pernix GN=APE_1167.1 PE=3 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 1.150e-13 Identity = 37/134 (27.61%), Postives = 77/134 (57.46%), Query Frame = 2 Query: 14 DLDEVLQSHTVYSNVSKGILAKSKDLISAFGTDDQTKICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVP 415 DL++VL + T+Y +V KG+ A +++ AFGT D ++ +IL++GE+Q+ ++R + R I + + + ++ T RP + IE + E+ F ++ ++ QA+E +R + + PI+ + + + +P Sbjct: 38 DLEDVLWTDTIYRDVRKGLKASPEEVKKAFGTSDPRRVAEKILKEGEIQLTEEQRRRLLEAKRRQIISYIARNAIDPTTGRPIPEARIEAALEEVRFPINLWRDAESQAVEAVRLIARVMPIRLARALLEVKIP 171
BLAST of CX294982 vs. ExPASy Swiss-Prot
Match: SDO1_PYRAB (Ribosome maturation protein SDO1 homolog OS=Pyrococcus abyssi GN=PYRAB06080 PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.707e-13 Identity = 38/140 (27.14%), Postives = 73/140 (52.14%), Query Frame = 2 Query: 8 EKDLDEVLQSHTVYSNVSKGILAKSKDLISAFGTDDQTKICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNI 427 E ++E+L + V+ + KG A K++ FGT D ++ IL KGE+Q+ ++R + R IATI+ + V+ T P+ + I R M E+ VD ++ Q +VI+ +++ P++ + + +P + + Sbjct: 37 EVPIEEILATPYVFKDAHKGDKASEKEMEKIFGTSDPYEVAKIILRKGEVQLTAQQRREMLEEKKRQIATIIHRHAVDPRTGYPHPVDRILRAMEEVGVRVDIFKDAEAQVQDVIKAIRRILPLRIEMKVIAVKIPSEYV 176
BLAST of CX294982 vs. ExPASy Swiss-Prot
Match: SDO1_PYRHO (Ribosome maturation protein SDO1 homolog OS=Pyrococcus horikoshii GN=PH1552 PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.454e-13 Identity = 38/137 (27.74%), Postives = 73/137 (53.28%), Query Frame = 2 Query: 17 LDEVLQSHTVYSNVSKGILAKSKDLISAFGTDDQTKICLEILEKGELQVAGKERETQFSNQFRDIATIVMQKTVNSETQRPYTISMIERLMHEIHFAVDPNSSSKKQALEVIRELQKHFPIKRSPMRVGLTVPEQNI 427 ++E+L + V+ + KG A K++ FGT D ++ IL+KGE+Q+ ++R + R IATI+ + V+ T P+ + I R M E+ VD ++ Q +VI+ L++ P++ + + +P + + Sbjct: 40 IEEILATPYVFKDAHKGDKASEKEMEKIFGTSDPYEVAKIILKKGEVQLTAQQRREMLEEKKRQIATIIHKHAVDPRTGYPHPVDRILRAMEEVGVRVDIFKDAEAQVQDVIKALRRVLPLRIEMKVIAVKIPGEYV 176 The following BLAST results are available for this feature:
BLAST of CX294982 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
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Sequences
The
following sequences are available for this feature:
EST sequence >CX294982 ID=CX294982; Name=CX294982; organism=Citrus clementina; type=EST; length=734bpback to top |