CX294987

Overview
NameCX294987
Unique NameCX294987
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294987 vs. ExPASy Swiss-Prot
Match: RL17_BIPLU (60S ribosomal protein L17 OS=Biphyllus lunatus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.084e-50
Identity = 100/144 (69.44%), Postives = 116/144 (80.56%), Query Frame = 1
Query:   28 DNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 459
            DN  KSCKARGS+LRVHFKNT ETA+AIRK+PL +A  YL++V A K+ +PF RF GGVGR AQAK +    QGRWP KSA+F+L LL+NAESNA+  GLDVD L + HIQVN+A   RRRTYRAHGRINPYMSSPCHIEL L+
Sbjct:    9 DNAGKSCKARGSNLRVHFKNTCETANAIRKMPLKRAVAYLKNVTAQKECVPFRRFNGGVGRCAQAK-QFGTTQGRWPKKSAEFLLQLLRNAESNADYSGLDVDRLVVQHIQVNRAACLRRRTYRAHGRINPYMSSPCHIELWLT 151          
BLAST of CX294987 vs. ExPASy Swiss-Prot
Match: RL17_PHLPP (60S ribosomal protein L17 OS=Phlebotomus papatasi GN=RpL17 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 6.063e-50
Identity = 97/144 (67.36%), Postives = 117/144 (81.25%), Query Frame = 1
Query:   28 DNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 459
            DN TKSCK+RGS LRVHFKNT E A+AI+ +PL +A+R+L++V+  K+ +PF RF GGVGR AQAK +    QGRWP KSA+F+L LL+NAESNA+ KGLDVD L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:    9 DNATKSCKSRGSHLRVHFKNTHEAANAIKHMPLRRAQRFLKNVVEKKECVPFRRFNGGVGRCAQAK-QWKTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVILT 151          
BLAST of CX294987 vs. ExPASy Swiss-Prot
Match: RL17_MACHI (60S ribosomal protein L17 OS=Maconellicoccus hirsutus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.918e-50
Identity = 95/143 (66.43%), Postives = 118/143 (82.52%), Query Frame = 1
Query:   31 NPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 459
            NP KSC+ARGS+LRVHFKNTRETA  I+++PL +A ++L++V   ++ +PF RF GGVGR AQAK +    QGRWP+KSA+F+L+LL+NAESNAE KGLD D L+I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   10 NPAKSCRARGSNLRVHFKNTRETAKTIKRMPLRRAIQFLKNVQDKQECVPFRRFNGGVGRCAQAK-QWGTTQGRWPIKSAQFLLELLRNAESNAEFKGLDSDRLFIEHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVILT 151          
BLAST of CX294987 vs. ExPASy Swiss-Prot
Match: RL17_DROYA (60S ribosomal protein L17 OS=Drosophila yakuba GN=RpL17 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.034e-49
Identity = 95/144 (65.97%), Postives = 116/144 (80.56%), Query Frame = 1
Query:   28 DNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 459
            DN  KSCKARG +LRVHFKNT ETA AI+++PL +A+RYL+ V+  K+ +PF RF GGVGR AQAK +    QGRWP KSA+F+L LL+NAE+NA+ KGLD D L + HIQVN+AQ  RRRTYRAHGRINPYMSSPCH+E+ L+
Sbjct:    9 DNVAKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRYLKAVIDQKECVPFRRFNGGVGRCAQAK-QWKTTQGRWPKKSAEFLLQLLRNAEANADCKGLDADRLVVHHIQVNRAQCLRRRTYRAHGRINPYMSSPCHVEVILT 151          
BLAST of CX294987 vs. ExPASy Swiss-Prot
Match: RL17_DROME (60S ribosomal protein L17 OS=Drosophila melanogaster GN=RpL17 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.034e-49
Identity = 95/144 (65.97%), Postives = 116/144 (80.56%), Query Frame = 1
Query:   28 DNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 459
            DN  KSCKARG +LRVHFKNT ETA AI+++PL +A+RYL+ V+  K+ +PF RF GGVGR AQAK +    QGRWP KSA+F+L LL+NAE+NA+ KGLD D L + HIQVN+AQ  RRRTYRAHGRINPYMSSPCH+E+ L+
Sbjct:    9 DNVAKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRYLKAVIDQKECVPFRRFNGGVGRCAQAK-QWKTTQGRWPKKSAEFLLQLLRNAEANADCKGLDADRLVVHHIQVNRAQCLRRRTYRAHGRINPYMSSPCHVEVILT 151          
BLAST of CX294987 vs. ExPASy Swiss-Prot
Match: RL17_DROPS (60S ribosomal protein L17 OS=Drosophila pseudoobscura pseudoobscura GN=RpL17 PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.351e-49
Identity = 94/144 (65.28%), Postives = 117/144 (81.25%), Query Frame = 1
Query:   28 DNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 459
            DN TKSCKARG +LRVHFKNT ETA AI+++PL +A+R+L+ V+  K+ +PF RF GGVGR AQAK +    QGRWP KSA+F+L LL+NAE+NA+ KGLD D + + HIQVN+AQ  RRRTYRAHGRINPYMSSPCH+E+ L+
Sbjct:    9 DNVTKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRFLKAVIDQKECVPFRRFNGGVGRCAQAK-QWKTTQGRWPKKSAEFLLQLLRNAEANADCKGLDADRMVVHHIQVNRAQCLRRRTYRAHGRINPYMSSPCHVEVILT 151          
BLAST of CX294987 vs. ExPASy Swiss-Prot
Match: RL17_AGRLI (60S ribosomal protein L17 OS=Agriotes lineatus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.351e-49
Identity = 97/140 (69.29%), Postives = 115/140 (82.14%), Query Frame = 1
Query:   40 KSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 459
            KSCKARGS+LRVHFKNT ETA+AIRK+PL +A  YL++V+ HK+ +PF RF GGVGR AQAK +    QGRWP KSA+F+L +L+NAESNA+  GLDVD L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   13 KSCKARGSNLRVHFKNTCETANAIRKMPLKRAVAYLKNVIGHKECVPFRRFNGGVGRCAQAK-QWGTTQGRWPKKSAEFLLQMLRNAESNADYSGLDVDRLVIEHIQVNRAACLRRRTYRAHGRINPYMSSPCHIEMWLT 151          
BLAST of CX294987 vs. ExPASy Swiss-Prot
Match: RL17_DIACI (60S ribosomal protein L17 OS=Diaphorina citri GN=RpL17 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.304e-49
Identity = 97/143 (67.83%), Postives = 114/143 (79.72%), Query Frame = 1
Query:   31 NPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 459
            NPTKSCKARGS+LRVHFKNTRETA  I K+PL +A ++L++V    + +PF R+ GGVGR AQAK +    QGRWP KSA F+L LLKNAESNA+ +GLD D L I HIQVN+A + RRRTYRAHGRINPYMSSPCHIE+ LS
Sbjct:   10 NPTKSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPFRRYNGGVGRCAQAK-QWGTTQGRWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQVNRAPRLRRRTYRAHGRINPYMSSPCHIEVILS 151          
BLAST of CX294987 vs. ExPASy Swiss-Prot
Match: RL17_PECGU (60S ribosomal protein L17 OS=Pectinaria gouldii GN=rpl-17 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.327e-48
Identity = 92/143 (64.34%), Postives = 113/143 (79.02%), Query Frame = 1
Query:   28 DNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 456
            +NP + CKA+G++ RVH+KNT ET  AI+ + L KA+ YL +V+ HKQ IPF R  GGVGR AQAKN +   QGRWP KS +F+L LLKNAESNAE++GLDVD+L ++H+ V+ A K RRRTYRAHGRINPYMSSPCHIEL L
Sbjct:    9 ENPNRVCKAKGTNFRVHYKNTSETGRAIKGMHLHKARSYLSNVVEHKQCIPFRRHKGGVGRCAQAKNFNTT-QGRWPKKSCEFMLQLLKNAESNAELRGLDVDSLVVAHVSVDAAAKMRRRTYRAHGRINPYMSSPCHIELCL 150          
BLAST of CX294987 vs. ExPASy Swiss-Prot
Match: RL17_CARGR (60S ribosomal protein L17 OS=Carabus granulatus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.674e-48
Identity = 94/144 (65.28%), Postives = 116/144 (80.56%), Query Frame = 1
Query:   28 DNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 459
            D  +K+CKARGS+LRVHFKNTRETA AI+K+ L +A+ +L++V  HK+ +PF RF GGVGR +QAK +    QGRWP KSA+F+L +L+NAESNA+  GLDVD L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:    9 DVASKTCKARGSNLRVHFKNTRETAMAIKKMSLRRAQAFLKNVTDHKECVPFRRFNGGVGRCSQAK-QWGTTQGRWPKKSAEFLLQMLRNAESNADYSGLDVDRLVIEHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEMWLT 151          
The following BLAST results are available for this feature:
BLAST of CX294987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
RL17_BIPLU2.084e-5069.4460S ribosomal protein L17 OS=Biphyllus lunatus GN=... [more]
RL17_PHLPP6.063e-5067.3660S ribosomal protein L17 OS=Phlebotomus papatasi ... [more]
RL17_MACHI7.918e-5066.4360S ribosomal protein L17 OS=Maconellicoccus hirsu... [more]
RL17_DROYA1.034e-4965.9760S ribosomal protein L17 OS=Drosophila yakuba GN=... [more]
RL17_DROME1.034e-4965.9760S ribosomal protein L17 OS=Drosophila melanogast... [more]
RL17_DROPS1.351e-4965.2860S ribosomal protein L17 OS=Drosophila pseudoobsc... [more]
RL17_AGRLI1.351e-4969.2960S ribosomal protein L17 OS=Agriotes lineatus GN=... [more]
RL17_DIACI2.304e-4967.8360S ribosomal protein L17 OS=Diaphorina citri GN=R... [more]
RL17_PECGU3.327e-4864.3460S ribosomal protein L17 OS=Pectinaria gouldii GN... [more]
RL17_CARGR5.674e-4865.2860S ribosomal protein L17 OS=Carabus granulatus GN... [more]

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Properties
Property NameValue
Genbank descriptionC05065D02SK DroRLeaf1 Citrus clementina cDNA clone C05065D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294987 ID=CX294987; Name=CX294987; organism=Citrus clementina; type=EST; length=748bp
GAGGCCTCGTGCCAATTCGGCACGAGGGACAATCCTACCAAGTCCTGCAA
AGCCAGGGGCTCTGATCTCAGGGTTCATTTTAAGAACACGAGAGAAACTG
CCCATGCCATCAGGAAATTGCCTTTGACGAAGGCTAAGAGGTATTTGGAG
GATGTTATGGCCCATAAACAGGCCATTCCCTTCACACGATTCTGCGGTGG
TGTTGGACGTACTGCTCAGGCAAAGAATAGGCATCCAAATGGACAGGGAC
GATGGCCTGTCAAATCAGCAAAGTTCATTCTTGACTTGCTCAAGAATGCT
GAGAGTAATGCTGAGGTGAAAGGTTTAGATGTTGATGCACTCTACATTTC
TCACATCCAAGTCAACCAGGCACAAAAGCAAAGGCGCCGCACATACCGTG
CTCATGGAAGAATTAATCCTTACATGTCCTCTCCCTGCCATATTGAGTTG
ACCTTATCTGAAAAGGAAGAGCCAGTAAAGAAAGAGCCTGAGACCCAGTT
GGCAACTAGCAAATCAAAGAAGTAATTGTCTGAGGTTTAGCATAGCAATT
GGAGAGTGCATTGATTTTCTATTTTGTGTTCTTGATGAAGTGAGTTTTTT
TACCTTTAATAGTGACTGAGATGTTATTTAGTCAAATCAGACATCATATT
TTGTTTATTTCATATTAAGTCCAGTTTACTGTTTTGTTAGAATCCTCAGT
CATACTGTTGGAGCTTTATGAAAATTAAAGACTTTCAGCTTATTTTGA
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