CX294987

Overview
NameCX294987
Unique NameCX294987
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig604 contig Ccv1_Contig604:1..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294987 vs. ExPASy Swiss-Prot
Match: RL17_DICDI (60S ribosomal protein L17 OS=Dictyostelium discoideum GN=rpl17 PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.816e-47
Identity = 93/146 (63.70%), Postives = 115/146 (78.77%), Query Frame = 1
Query:   22 TRDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 459
            T  NP KSCK+RGS+LR+HFKNTRE+A AI+ + LT+AK YL +V+AH++ IPF RF GGVGRT QAK      QGRWP KS + IL LL+NAE+NAE KGL+V+ L I+H+QV +AQ+QRRRTYRAHGRINPYM SP  +E  L+
Sbjct:    9 TPSNPEKSCKSRGSNLRIHFKNTRESAMAIKGMLLTRAKAYLNNVLAHRECIPFRRFKGGVGRTGQAKI-FGTSQGRWPKKSVEHILSLLQNAEANAEAKGLNVEKLKIAHVQVQRAQQQRRRTYRAHGRINPYMCSPSTVEFILT 153          
BLAST of CX294987 vs. ExPASy Swiss-Prot
Match: RL17A_YEAST (60S ribosomal protein L17-A OS=Saccharomyces cerevisiae GN=RPL17A PE=1 SV=4)

HSP 1 Score: 180.259 bits (456), Expect = 1.002e-44
Identity = 93/146 (63.70%), Postives = 106/146 (72.60%), Query Frame = 1
Query:   22 TRDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 459
            T  NP KS  ARGS LRV FKNTRETA AI    LTKA++YLE V+ H++AIPF RF   +GRTAQ K      + RWP KS KF+  LL+NA +NAE KGLD   LY+SHIQVNQA KQRRRTYRAHGRIN Y SSP HIEL ++
Sbjct:    7 TSTNPAKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPFRRFNSSIGRTAQGKEFGVT-KARWPAKSVKFVQGLLQNAAANAEAKGLDATKLYVSHIQVNQAPKQRRRTYRAHGRINKYESSPSHIELVVT 151          
BLAST of CX294987 vs. ExPASy Swiss-Prot
Match: RL17_NEUCR (60S ribosomal protein L17 OS=Neurospora crassa GN=rpl-17 PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.231e-44
Identity = 88/142 (61.97%), Postives = 108/142 (76.06%), Query Frame = 1
Query:   34 PTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 459
            P KS ++RGS LRV FKNTRETA AI    L +A+++LE+V+  K+A+P  R+ GG GR AQ K +    + RWP KSA+F+L LLKNAE+NA+ KGLD   L + HIQVNQA KQRRRTYRAHGRINPYMS+PCHIEL L+
Sbjct:   11 PAKSARSRGSYLRVSFKNTRETAQAINGWKLQRAQKFLENVLEKKEAVPMRRYAGGTGRAAQGK-QFGVSRARWPAKSAEFLLGLLKNAEANADAKGLDTGNLVVKHIQVNQAPKQRRRTYRAHGRINPYMSNPCHIELILT 151          
BLAST of CX294987 vs. ExPASy Swiss-Prot
Match: RL17B_YEAST (60S ribosomal protein L17-B OS=Saccharomyces cerevisiae GN=RPL17B PE=1 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 2.231e-44
Identity = 92/146 (63.01%), Postives = 106/146 (72.60%), Query Frame = 1
Query:   22 TRDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 459
            T  NP KS  ARGS LRV FKNTRETA AI    LTKA++YL+ V+ H++AIPF RF   +GRTAQ K      + RWP KS KF+  LL+NA +NAE KGLD   LY+SHIQVNQA KQRRRTYRAHGRIN Y SSP HIEL ++
Sbjct:    7 TSTNPAKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLDQVLDHQRAIPFRRFNSSIGRTAQGKEFGVT-KARWPAKSVKFVQGLLQNAAANAEAKGLDATKLYVSHIQVNQAPKQRRRTYRAHGRINKYESSPSHIELVVT 151          
BLAST of CX294987 vs. ExPASy Swiss-Prot
Match: RL17_ASPFU (60S ribosomal protein L17 OS=Aspergillus fumigatus GN=rpl17 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.467e-43
Identity = 89/150 (59.33%), Postives = 111/150 (74.00%), Query Frame = 1
Query:   13 QFGTRDNPT-KSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 459
            ++  +D P  KS +ARGS LRV FKNTRETA AI  + L +A  +LE+V    + +PF R+ G +GRTAQ K    + + RWPVKSA+F+LDLLKNAE+NA+ KGLD   L + HIQVNQA K RRRTYRAHGRINPYM++PCHIEL L+
Sbjct:   10 RYAAQDIPAAKSARARGSYLRVSFKNTRETAQAINGMKLQRALAFLENVKNKTEVVPFRRYAGSIGRTAQGKQWGVS-KARWPVKSAQFLLDLLKNAEANADTKGLDTGNLIVKHIQVNQAPKGRRRTYRAHGRINPYMTNPCHIELILT 158          
BLAST of CX294987 vs. ExPASy Swiss-Prot
Match: RL17_DEBHA (60S ribosomal protein L17 OS=Debaryomyces hansenii GN=RPL17 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.208e-43
Identity = 89/146 (60.96%), Postives = 104/146 (71.23%), Query Frame = 1
Query:   22 TRDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 459
            T  NP KS  ARGS LRV +KNTRETA AI    L +A++YL+ V+ H++AIPF RF   +GRT Q K      + RWP KS  FI DLL+N ++NAE KGLD   L +SHIQVNQA KQRRRTYRAHGRIN Y SSPCHIEL L+
Sbjct:    7 TSANPAKSASARGSYLRVSYKNTRETAQAISGWKLERAQKYLDQVLDHQRAIPFRRFNSSIGRTGQGKEFGVT-KARWPAKSVNFIKDLLRNGQANAESKGLDASKLKVSHIQVNQAPKQRRRTYRAHGRINAYQSSPCHIELILT 151          
BLAST of CX294987 vs. ExPASy Swiss-Prot
Match: RL17A_SCHPO (60S ribosomal protein L17-A OS=Schizosaccharomyces pombe GN=rpl17a PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.496e-43
Identity = 88/141 (62.41%), Postives = 103/141 (73.05%), Query Frame = 1
Query:   37 TKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 459
            TK  KARG+ LR HFKN+RE A  I  + L KA  +L++V  HKQA+PF RF GGVGRTAQ K      Q RWPVKS KF  DLLKNAE+NAE KGLD+D L I H+QVN A KQRRRTYRAHGR+  Y+SSP HIE+ ++
Sbjct:   12 TKCAKARGAYLRTHFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQGKEFGVT-QARWPVKSVKFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLSSPSHIEIIVA 151          
BLAST of CX294987 vs. ExPASy Swiss-Prot
Match: RL17B_SCHPO (60S ribosomal protein L17-B OS=Schizosaccharomyces pombe GN=rpl17b PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.728e-42
Identity = 87/141 (61.70%), Postives = 102/141 (72.34%), Query Frame = 1
Query:   37 TKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 459
            TK  KARG+ LR HFKN+RE A  I  + L KA  +L++V  HKQA+PF RF GGVGRTAQ K      Q RWPVKS  F  DLLKNAE+NAE KGLD+D L I H+QVN A KQRRRTYRAHGR+  Y+SSP HIE+ ++
Sbjct:   12 TKCAKARGAYLRTHFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQGKEFGVT-QARWPVKSVNFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLSSPSHIEIIVA 151          
BLAST of CX294987 vs. ExPASy Swiss-Prot
Match: RL17_YARLI (60S ribosomal protein L17 OS=Yarrowia lipolytica GN=RPL17 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.563e-42
Identity = 93/164 (56.71%), Postives = 108/164 (65.85%), Query Frame = 1
Query:   31 NPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXXTQLATSKSKK 522
            +PTK+  ARG+ LR  FKNT E A AIR   L KA  YL+ V  HK+AIPF +  G +GRT Q K      + RWPVKS KF+ DLL+NA++NAE KGLD + L ISHIQVNQA KQRRRTYRAHGRIN Y SSP HIEL LS           T LA   S++
Sbjct:   10 DPTKTASARGAYLRTSFKNTYEVAGAIRGWNLQKALAYLDQVTDHKRAIPFRKHAGSIGRTGQGKEFGVT-KARWPVKSIKFVQDLLQNAQANAETKGLDKETLVISHIQVNQAPKQRRRTYRAHGRINAYQSSPSHIELILSEPAEEIAKAKETSLAHISSRQ 172          
BLAST of CX294987 vs. ExPASy Swiss-Prot
Match: RL17_THEPA (60S ribosomal protein L17 OS=Theileria parva GN=RPL17 PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.037e-41
Identity = 86/140 (61.43%), Postives = 105/140 (75.00%), Query Frame = 1
Query:   31 NPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 450
            N T+S KA G+ LRVHFKNT ETA AI+ + +  AKRYL DV+  K+ +PF +F GGVGR AQAK    + QGRWP KS KF+LDLLKN ESNAEVKGL+   L + H+QVN+A   RRR+YRAHGRI P++S PCH+EL
Sbjct:   10 NLTRSAKAYGAYLRVHFKNTYETATAIKGMLVKDAKRYLNDVIERKRCVPFRKFRGGVGRCAQAK-AFKHTQGRWPEKSCKFLLDLLKNLESNAEVKGLEQSKLRLEHVQVNRAPVGRRRSYRAHGRIIPFLSHPCHVEL 148          
The following BLAST results are available for this feature:
BLAST of CX294987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
RL17_DICDI2.816e-4763.7060S ribosomal protein L17 OS=Dictyostelium discoid... [more]
RL17A_YEAST1.002e-4463.7060S ribosomal protein L17-A OS=Saccharomyces cerev... [more]
RL17_NEUCR2.231e-4461.9760S ribosomal protein L17 OS=Neurospora crassa GN=... [more]
RL17B_YEAST2.231e-4463.0160S ribosomal protein L17-B OS=Saccharomyces cerev... [more]
RL17_ASPFU2.467e-4359.3360S ribosomal protein L17 OS=Aspergillus fumigatus... [more]
RL17_DEBHA4.208e-4360.9660S ribosomal protein L17 OS=Debaryomyces hansenii... [more]
RL17A_SCHPO5.496e-4362.4160S ribosomal protein L17-A OS=Schizosaccharomyces... [more]
RL17B_SCHPO2.728e-4261.7060S ribosomal protein L17-B OS=Schizosaccharomyces... [more]
RL17_YARLI3.563e-4256.7160S ribosomal protein L17 OS=Yarrowia lipolytica G... [more]
RL17_THEPA1.037e-4161.4360S ribosomal protein L17 OS=Theileria parva GN=RP... [more]

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Properties
Property NameValue
Genbank descriptionC05065D02SK DroRLeaf1 Citrus clementina cDNA clone C05065D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294987 ID=CX294987; Name=CX294987; organism=Citrus clementina; type=EST; length=748bp
GAGGCCTCGTGCCAATTCGGCACGAGGGACAATCCTACCAAGTCCTGCAA
AGCCAGGGGCTCTGATCTCAGGGTTCATTTTAAGAACACGAGAGAAACTG
CCCATGCCATCAGGAAATTGCCTTTGACGAAGGCTAAGAGGTATTTGGAG
GATGTTATGGCCCATAAACAGGCCATTCCCTTCACACGATTCTGCGGTGG
TGTTGGACGTACTGCTCAGGCAAAGAATAGGCATCCAAATGGACAGGGAC
GATGGCCTGTCAAATCAGCAAAGTTCATTCTTGACTTGCTCAAGAATGCT
GAGAGTAATGCTGAGGTGAAAGGTTTAGATGTTGATGCACTCTACATTTC
TCACATCCAAGTCAACCAGGCACAAAAGCAAAGGCGCCGCACATACCGTG
CTCATGGAAGAATTAATCCTTACATGTCCTCTCCCTGCCATATTGAGTTG
ACCTTATCTGAAAAGGAAGAGCCAGTAAAGAAAGAGCCTGAGACCCAGTT
GGCAACTAGCAAATCAAAGAAGTAATTGTCTGAGGTTTAGCATAGCAATT
GGAGAGTGCATTGATTTTCTATTTTGTGTTCTTGATGAAGTGAGTTTTTT
TACCTTTAATAGTGACTGAGATGTTATTTAGTCAAATCAGACATCATATT
TTGTTTATTTCATATTAAGTCCAGTTTACTGTTTTGTTAGAATCCTCAGT
CATACTGTTGGAGCTTTATGAAAATTAAAGACTTTCAGCTTATTTTGA
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