CX294987

Overview
NameCX294987
Unique NameCX294987
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig604 contig Ccv1_Contig604:1..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294987 vs. ExPASy Swiss-Prot
Match: RL22_META3 (50S ribosomal protein L22P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.666e-15
Identity = 50/142 (35.21%), Postives = 75/142 (52.82%), Query Frame = 1
Query:   31 NPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 456
            +P K+ +A G  LR+  K+T E    I  + L KA  YL  V+  KQ +PF R    V      K ++    GR+P K++  IL +L+NA+ NAE KG++ + L I HI  N+    +R   RA GR +P      H+++ L
Sbjct:   11 DPNKTARAMGRSLRISRKHTIEICREISGMKLDKAIAYLNRVIELKQVVPFKRHGKDV---PHKKGKYGWTAGRFPQKASTQILSVLENAKKNAEYKGMNTEKLRIKHISSNKGFTIKRHMPRAFGRASPKNQETVHVQVIL 149          
BLAST of CX294987 vs. ExPASy Swiss-Prot
Match: RL22_SULAC (50S ribosomal protein L22P OS=Sulfolobus acidocaldarius GN=rpl22p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.712e-15
Identity = 47/139 (33.81%), Postives = 72/139 (51.80%), Query Frame = 1
Query:   40 KSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 456
            K  KA   ++    ++      AIR + L +A+ +L +V+  K+A+PF R+  G    +    +     GR+P K+ K++L LL NAE+NA  KGLD+D L I HI  ++    +R   RA GR         HIE+ L
Sbjct:   15 KLAKAVIKNIDASVRDLYNVCKAIRGMNLKEAREFLNNVLEEKEALPFWRYSHGTSHRSNISRKWKVKSGRYPKKAIKYVLKLLDNAENNANSKGLDIDNLKIVHIAAHKGLVLKRYMTRAFGRSTRKYKYLSHIEVIL 153          
BLAST of CX294987 vs. ExPASy Swiss-Prot
Match: RL22_PYRFU (50S ribosomal protein L22P OS=Pyrococcus furiosus GN=rpl22p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.712e-15
Identity = 52/142 (36.62%), Postives = 72/142 (50.70%), Query Frame = 1
Query:   31 NPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 456
            +P +  +A   DLR+  K   E    +R + L  A RYL+DV+A K+ +P  R+    G     K     G GR+PVK AK I  +L N ++NA  KGLD D L I HI  ++    R    RA GR  P+     HIE+ +
Sbjct:   13 DPKRMARASARDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALKRPVPLKRYNDSQGH----KPGKGFGPGRYPVKVAKAIKKVLLNVKNNAVQKGLDPDKLKIIHIAAHKGPVLRGWYPRAFGRATPFNEQTTHIEVVV 150          
BLAST of CX294987 vs. ExPASy Swiss-Prot
Match: RL22_HALWD (50S ribosomal protein L22P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.712e-15
Identity = 41/147 (27.89%), Postives = 82/147 (55.78%), Query Frame = 1
Query:   16 FGTRDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 456
            +  + +P  + +    D  +  K+++  A  I+ + +  A+ YL+DV+A +Q++PF +   GVG  +          GR+P K++K  L+L++N  SNA  +G D +A+ I H+  ++  +++ R  RA G  +P+ ++ C +EL +
Sbjct:    5 YSVKADPETTARGMLRDRPISLKHSKAIAREIKGMTIADAESYLDDVIAQRQSVPFRQHNSGVGHRSDIDGWDA---GRYPEKASKAFLELIENVASNANEQGFDGNAMAIRHVAAHKVGERQGRKPRAFGSADPWNTTICDVELII 148          
BLAST of CX294987 vs. ExPASy Swiss-Prot
Match: RL22_PYRCJ (50S ribosomal protein L22P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl22p PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.848e-15
Identity = 51/146 (34.93%), Postives = 75/146 (51.37%), Query Frame = 1
Query:   13 QFGTRDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 450
            ++G R  P +  KA   + R+ +K + E A  I+ + L +AK +LEDV+  K+ IP   F       A      P    +WPVK AK  L LL+N E+NA+ KGLDV+ L I H   ++  K      RA GR  P+     ++E+
Sbjct:   20 KYGVRITPEQIAKAYAPEQRMSWKKSVEVARFIKGMTLKQAKAWLEDVVKLKRPIPIKTFKKKQAHHATPWEGWP--VAKWPVKVAKRYLQLLENLENNAKFKGLDVERLVIIHAAAHKGIKIPNIMPRAFGRATPFNEETVNVEI 163          
BLAST of CX294987 vs. ExPASy Swiss-Prot
Match: RL22_METMJ (50S ribosomal protein L22P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.848e-15
Identity = 52/137 (37.96%), Postives = 78/137 (56.93%), Query Frame = 1
Query:   49 KARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 459
            +A+ ++L V  K++ E A  I+ +  T+AK YL DV+A K+AIPF RF   V    +  ++ P   GR+PVK+A+  + LL++ E NAE  GLDV+ L I H   N  +  R    RA GR  P      +IE+ ++
Sbjct:   17 RAKANELPVSPKHSIEIARFIKNMTTTEAKAYLTDVVALKKAIPFKRFNRNVAHK-RGLSKWP--AGRYPVKAAEAYIRLLESVEKNAEYIGLDVENLRIDHAAANTGRGLRAFFPRAMGRATPKRRETVNIEIVVT 150          
BLAST of CX294987 vs. ExPASy Swiss-Prot
Match: RL22_CALMQ (50S ribosomal protein L22P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.104e-14
Identity = 50/140 (35.71%), Postives = 68/140 (48.57%), Query Frame = 1
Query:   49 KARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQ------GRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 450
            KARG + R+ +K   ETA AIR L + +A+ Y+E V   K  IP   F          K  H N         +WPVK A   L +L+N ESNA  +GL++D   I H   ++  + R    RA GR  P+     +IEL
Sbjct:   30 KARGFEFRISWKKAIETARAIRFLTIKQAEDYMEKVKDLKAPIPIKEFT--------RKQAHHNVPWDGWPVAKWPVKVADSFLQVLRNLESNASYRGLNIDNTVIVHASASRGMRIRNYMPRALGRATPWFQDTVNIEL 161          
BLAST of CX294987 vs. ExPASy Swiss-Prot
Match: RL22_UNCMA (50S ribosomal protein L22P OS=Uncultured methanogenic archaeon RC-I GN=rpl22p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.144e-14
Identity = 48/144 (33.33%), Postives = 78/144 (54.17%), Query Frame = 1
Query:   31 NPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNG--QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 456
            +P  + KA   ++ V  K+ +E    IR + L+ AK YL+DV+  K+++PF +    VG       RH +G   GR+PVK++  IL LLK+AE+NAE KGL+ + + I H    + +  +    RA GR   +      +E+ +
Sbjct:   11 DPATTAKAMAYEINVSPKHCQEICRQIRGMKLSAAKTYLQDVIDKKRSVPFKQHARNVGH-----KRHQSGWPSGRYPVKASTEILKLLKHAEANAEYKGLETENMRIIHSTSKKGRVIQGIMPRAMGRATAWNIELVTVEVVI 149          
BLAST of CX294987 vs. ExPASy Swiss-Prot
Match: RL22_AERPE (50S ribosomal protein L22P OS=Aeropyrum pernix GN=rpl22p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.194e-13
Identity = 48/134 (35.82%), Postives = 72/134 (53.73%), Query Frame = 1
Query:   49 KARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 450
            KA   ++ VH K   E A AI  + + +A+RYL  V+  ++A+PF R  G         ++     GR+PVK+A+++L LL N E+NA  K LDV+ L I H+  ++    +R   RA GR  P      HIE+
Sbjct:   18 KAVLRNVPVHPKIMAEVARAISGMRVDEARRYLRAVIEKREAVPFRRAHGKQAHRRGLADKWGWPVGRYPVKAARYMLKLLDNVEANAANKNLDVERLKIIHVAAHKGITLKRWMPRAWGRATPRNRVHSHIEI 151          
BLAST of CX294987 vs. ExPASy Swiss-Prot
Match: RL22_PICTO (50S ribosomal protein L22P OS=Picrophilus torridus GN=rpl22p PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.560e-13
Identity = 43/147 (29.25%), Postives = 81/147 (55.10%), Query Frame = 1
Query:   16 FGTRDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 456
            +  ++ P +S +AR  ++ +  K+    AH ++ + L  AK  L++V+  K  +P+ R+   V       +R   G GR+PVK+A+    LL++  +NAE KGL  D+L I HI V++ +  ++ T +A+GR   +     ++E+ +
Sbjct:    4 YSIKEFPERSARARIREIDISLKDAVNVAHFLKGMDLDSAKNVLDNVIEKKVPVPYFRYMDSV------SHRKGIGPGRYPVKAARAFKKLLEDVSANAEFKGLS-DSLEIVHIAVSKGRMIKKYTPKAYGRAGAFFKDLVNLEVVV 143          
The following BLAST results are available for this feature:
BLAST of CX294987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
RL22_META31.666e-1535.2150S ribosomal protein L22P OS=Methanococcus aeolic... [more]
RL22_SULAC3.712e-1533.8150S ribosomal protein L22P OS=Sulfolobus acidocald... [more]
RL22_PYRFU3.712e-1536.6250S ribosomal protein L22P OS=Pyrococcus furiosus ... [more]
RL22_HALWD3.712e-1527.8950S ribosomal protein L22P OS=Haloquadratum walsby... [more]
RL22_PYRCJ4.848e-1534.9350S ribosomal protein L22P OS=Pyrobaculum calidifo... [more]
RL22_METMJ4.848e-1537.9650S ribosomal protein L22P OS=Methanoculleus maris... [more]
RL22_CALMQ4.104e-1435.7150S ribosomal protein L22P OS=Caldivirga maquiling... [more]
RL22_UNCMA9.144e-1433.3350S ribosomal protein L22P OS=Uncultured methanoge... [more]
RL22_AERPE1.194e-1335.8250S ribosomal protein L22P OS=Aeropyrum pernix GN=... [more]
RL22_PICTO1.560e-1329.2550S ribosomal protein L22P OS=Picrophilus torridus... [more]

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Properties
Property NameValue
Genbank descriptionC05065D02SK DroRLeaf1 Citrus clementina cDNA clone C05065D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294987 ID=CX294987; Name=CX294987; organism=Citrus clementina; type=EST; length=748bp
GAGGCCTCGTGCCAATTCGGCACGAGGGACAATCCTACCAAGTCCTGCAA
AGCCAGGGGCTCTGATCTCAGGGTTCATTTTAAGAACACGAGAGAAACTG
CCCATGCCATCAGGAAATTGCCTTTGACGAAGGCTAAGAGGTATTTGGAG
GATGTTATGGCCCATAAACAGGCCATTCCCTTCACACGATTCTGCGGTGG
TGTTGGACGTACTGCTCAGGCAAAGAATAGGCATCCAAATGGACAGGGAC
GATGGCCTGTCAAATCAGCAAAGTTCATTCTTGACTTGCTCAAGAATGCT
GAGAGTAATGCTGAGGTGAAAGGTTTAGATGTTGATGCACTCTACATTTC
TCACATCCAAGTCAACCAGGCACAAAAGCAAAGGCGCCGCACATACCGTG
CTCATGGAAGAATTAATCCTTACATGTCCTCTCCCTGCCATATTGAGTTG
ACCTTATCTGAAAAGGAAGAGCCAGTAAAGAAAGAGCCTGAGACCCAGTT
GGCAACTAGCAAATCAAAGAAGTAATTGTCTGAGGTTTAGCATAGCAATT
GGAGAGTGCATTGATTTTCTATTTTGTGTTCTTGATGAAGTGAGTTTTTT
TACCTTTAATAGTGACTGAGATGTTATTTAGTCAAATCAGACATCATATT
TTGTTTATTTCATATTAAGTCCAGTTTACTGTTTTGTTAGAATCCTCAGT
CATACTGTTGGAGCTTTATGAAAATTAAAGACTTTCAGCTTATTTTGA
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