CX294988

Overview
NameCX294988
Unique NameCX294988
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294988 vs. ExPASy Swiss-Prot
Match: CLK3_HUMAN (Dual specificity protein kinase CLK3 OS=Homo sapiens GN=CLK3 PE=1 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 8.953e-24
Identity = 56/125 (44.80%), Postives = 77/125 (61.60%), Query Frame = 3
Query:    3 PCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPQHMLKRVDRHAEKYVRRGGRLDWPEGAASRESIKSVMKLPRLQNLIMQHVDHSAGDLTHLLQGLLRYDPTDRLTAREALRHPFF 377
            PCD+WS+GCIL E   G  LFQTHEN EHL MME++LGP+P HM+ R  +  +KY  +GG L W E ++    +K   K P    ++   ++H    L  L++ +L +DP  R+T  EAL HPFF
Sbjct:  502 PCDVWSIGCILFEYYRGFTLFQTHENREHLVMMEKILGPIPSHMIHRTRK--QKYFYKGG-LVWDENSSDGRYVKENCK-PLKSYMLQDSLEHV--QLFDLMRRMLEFDPAQRITLAEALLHPFF 620          
BLAST of CX294988 vs. ExPASy Swiss-Prot
Match: CLK3_BOVIN (Dual specificity protein kinase CLK3 OS=Bos taurus GN=CLK3 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.169e-23
Identity = 56/125 (44.80%), Postives = 77/125 (61.60%), Query Frame = 3
Query:    3 PCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPQHMLKRVDRHAEKYVRRGGRLDWPEGAASRESIKSVMKLPRLQNLIMQHVDHSAGDLTHLLQGLLRYDPTDRLTAREALRHPFF 377
            PCD+WS+GCIL E   G  LFQTHEN EHL MME++LGP+P HM+ R  +  +KY  +GG L W E ++    +K   K P    ++   ++H    L  L++ +L +DP  R+T  EAL HPFF
Sbjct:  354 PCDVWSIGCILFEYYRGFTLFQTHENREHLVMMEKILGPIPSHMIHRTRK--QKYFYKGG-LVWDENSSDGRYVKENCK-PLKSYMLQDTLEHV--QLFDLMRRMLEFDPAQRITLAEALLHPFF 472          
BLAST of CX294988 vs. ExPASy Swiss-Prot
Match: CLK1_MOUSE (Dual specificity protein kinase CLK1 OS=Mus musculus GN=Clk1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.402e-23
Identity = 54/125 (43.20%), Postives = 80/125 (64.00%), Query Frame = 3
Query:    3 PCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPQHMLKRVDRHAEKYVRRGGRLDWPEGAASRESIKSVMKLPRLQNLIMQHVDHSAGDLTHLLQGLLRYDPTDRLTAREALRHPFF 377
            PCD+WS+GCIL+E   G  +F TH++ EHLAMMER+LGPLP+HM+++  +   +Y     RLDW E +++   +    K P  + ++ Q  +H    L  L+  +L YDP  R+T +EAL+HPFF
Sbjct:  358 PCDVWSIGCILIEYYLGFTVFPTHDSREHLAMMERILGPLPKHMIQKTRK--RRYFHH-DRLDWDEHSSAGRYVSRRCK-PLKEFMLSQDAEHEF--LFDLVGKILEYDPAKRITLKEALKHPFF 476          
BLAST of CX294988 vs. ExPASy Swiss-Prot
Match: CLK4_MOUSE (Dual specificity protein kinase CLK4 OS=Mus musculus GN=Clk4 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.579e-23
Identity = 57/132 (43.18%), Postives = 84/132 (63.64%), Query Frame = 3
Query:    3 PCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPQHMLKRVDRHAEKYVRRGGRLDWPEGAASRESIKSVMKLPRLQNLIMQHVDHSAGDLTHLLQGLLRYDPTDRLTAREALRHPFFTRDHLRR 398
            PCD+WS+GCIL+E   G  +FQTH++ EHLAMMER+LGP+P HM+++  +   KY     +LDW E +++   ++   K   L+  ++ H D     L  L++ +L YDP  R+T  EAL+HPFF  D L+R
Sbjct:  357 PCDVWSIGCILIEYYLGFTVFQTHDSKEHLAMMERILGPIPAHMIQKTRK--RKYFHH-NQLDWDEHSSAGRYVRRRCK--PLKEFMLCH-DEEHEKLFDLVRRMLEYDPARRITLDEALQHPFF--DLLKR 480          
BLAST of CX294988 vs. ExPASy Swiss-Prot
Match: DOA_DROME (Serine/threonine-protein kinase Doa OS=Drosophila melanogaster GN=Doa PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.912e-22
Identity = 56/130 (43.08%), Postives = 79/130 (60.77%), Query Frame = 3
Query:    3 PCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPQHMLKRVDRHAE---KYVRRGGRLDWPEGAASRESIKSVMKLPRLQNLIMQHVDHSAGDLTHLLQGLLRYDPTDRLTAREALRHPFFTR 383
            PCD+WS+GCIL EL  G  LFQTH+N EHLAMMER+LG +P  M +    +++   KY    G+LDW E +++   ++   K P     +    DH   +L  L++ +L Y+P+ R+T  EAL HPFF R
Sbjct:  676 PCDVWSIGCILFELYLGITLFQTHDNREHLAMMERILGQIPYRMARNHTLYSKTKTKYFYH-GKLDWDEKSSAGRYVRDHCK-PLFLCQLSDSEDHC--ELFSLIKKMLEYEPSSRITLGEALHHPFFDR 801          
BLAST of CX294988 vs. ExPASy Swiss-Prot
Match: CLKA_DICDI (Probable serine/threonine-protein kinase clkA OS=Dictyostelium discoideum GN=clkA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.980e-19
Identity = 53/124 (42.74%), Postives = 72/124 (58.06%), Query Frame = 3
Query:    3 PCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPQHMLKRVDRHAEKYVRRGGRLDWPEGAASRESIKSVMKLPRLQNLIMQHVDHSAGDLTHLLQGLLRYDPTDRLTAREALRHPF 374
            PCDIW VGCILVEL  G  LF TH N++HLAMME+V+GP P  M       ++KY    G L+ P+ +   +S++ V  L +L+     H  H +     L   LL Y P+ R++A +AL HPF
Sbjct:  804 PCDIWGVGCILVELYLGYTLFDTHNNVQHLAMMEKVMGPFPNSM----SNVSKKYFNDYGTLNRPQNSDEIKSMERVEGLKQLKEYF--HPCHDS--FFDLASRLLEYQPSKRISASDALSHPF 919          
The following BLAST results are available for this feature:
BLAST of CX294988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
CLK3_HUMAN8.953e-2444.80Dual specificity protein kinase CLK3 OS=Homo sapie... [more]
CLK3_BOVIN1.169e-2344.80Dual specificity protein kinase CLK3 OS=Bos taurus... [more]
CLK1_MOUSE3.402e-2343.20Dual specificity protein kinase CLK1 OS=Mus muscul... [more]
CLK4_MOUSE7.579e-2343.18Dual specificity protein kinase CLK4 OS=Mus muscul... [more]
DOA_DROME4.912e-2243.08Serine/threonine-protein kinase Doa OS=Drosophila ... [more]
CLKA_DICDI2.980e-1942.74Probable serine/threonine-protein kinase clkA OS=D... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05065D03SK DroRLeaf1 Citrus clementina cDNA clone C05065D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294988 ID=CX294988; Name=CX294988; organism=Citrus clementina; type=EST; length=716bp
TCCCATGTGATATATGGAGTGTTGGTTGTATCTTAGTGGAGTTATGCACG
GGTGAGGCATTATTCCAAACTCATGAGAACTTGGAACACCTTGCGATGAT
GGAACGGGTGCTTGGTCCCTTGCCTCAACATATGCTGAAGAGAGTAGACC
GACATGCAGAGAAGTATGTTAGAAGGGGGGGTAGGTTGGACTGGCCAGAA
GGTGCAGCCTCTAGGGAAAGTATTAAATCTGTGATGAAGCTACCTCGTCT
TCAGAACCTAATAATGCAGCACGTTGACCATTCAGCTGGTGATCTTACAC
ATTTATTGCAAGGACTGCTTAGGTATGATCCTACGGACAGGCTAACTGCG
CGTGAAGCTCTTAGGCATCCCTTTTTTACAAGAGATCATCTTAGGAGATA
GGTACCCATATACTTGTTACACAATTCTCCGGTTGCAATATGCGGTGGTT
AGAAGCCAAGTATCACAGTTGTGGGATCTGGGTTGTTCTATTTTGTTGTG
CTGTTGCATGTTCTTACTTATCTAACCCAAATCTGAGGCACTGTGAATAT
TTGACATTAAGAAATGGAATTTGTGGGGGAAAAAGGGTGGAGGATTTTCC
TCTTCACCCAACAAAAGACCTAGGTATGTGTTGTACATGGTGGAGTTAGT
TTCTTGGCATGATTTTGCCTACAAATGTGACTAACCAAAGTGTAAAATAT
TGGATCTTTTGTATCT
back to top