CX294993

Overview
NameCX294993
Unique NameCX294993
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294993 vs. ExPASy Swiss-Prot
Match: SGTB_RAT (Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Rattus norvegicus GN=Sgtb PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-11
Identity = 40/103 (38.83%), Postives = 60/103 (58.25%), Query Frame = 3
Query:  411 SNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALLYYNEA 719
            SN VP       +  ++ LK++GN   K + +  AV+ Y++AI+L+  +A YY NRAAA  +L  +  A +DC K I++D K  KAY R G A  A+  + EA
Sbjct:   75 SNSVP-----EDVGKADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLSHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTAMNKFEEA 172          
BLAST of CX294993 vs. ExPASy Swiss-Prot
Match: SGTB_MOUSE (Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Mus musculus GN=Sgtb PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-11
Identity = 40/103 (38.83%), Postives = 60/103 (58.25%), Query Frame = 3
Query:  411 SNLVPLPDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALLYYNEA 719
            SN VP       +  ++ LK++GN   K + +  AV+ Y++AI+L+  +A YY NRAAA  +L  +  A +DC K I++D K  KAY R G A  A+  + EA
Sbjct:   75 SNSVP-----EDVGKADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLSHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTAMNKFEEA 172          
BLAST of CX294993 vs. ExPASy Swiss-Prot
Match: SGTA_RAT (Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Rattus norvegicus GN=Sgta PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-11
Identity = 42/104 (40.38%), Postives = 58/104 (55.77%), Query Frame = 3
Query:  429 PDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA-------REALLYYNEA 719
            P    S +A E LK +GN   K + +  AV+ Y +AI+LN  +A Y+ NRAAAY +LG +  A +DC + I +D    KAY R G A        EA+ YY +A
Sbjct:   83 PSEEDSAEA-ERLKTEGNEQMKLENFEAAVHLYGKAIELNPANAVYFCNRAAAYSKLGNYVGAVQDCERAIGIDPGYSKAYGRMGLALSSLNKHAEAVAYYKKA 185          
BLAST of CX294993 vs. ExPASy Swiss-Prot
Match: SGTA_MOUSE (Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Mus musculus GN=Sgta PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-11
Identity = 42/104 (40.38%), Postives = 58/104 (55.77%), Query Frame = 3
Query:  429 PDTNGSIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTA-------REALLYYNEA 719
            P    S +A E LK +GN   K + +  AV+ Y +AI+LN  +A Y+ NRAAAY +LG +  A +DC + I +D    KAY R G A        EA+ YY +A
Sbjct:   84 PSEEDSAEA-ERLKTEGNEQMKLENFEAAVHLYGKAIELNPANAVYFCNRAAAYSKLGNYVGAVQDCERAIGIDPGYSKAYGRMGLALSSLNKHAEAVAYYKKA 186          
BLAST of CX294993 vs. ExPASy Swiss-Prot
Match: TOM70_HUMAN (Mitochondrial import receptor subunit TOM70 OS=Homo sapiens GN=TOMM70A PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.011e-11
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 3
Query:  444 SIDASELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTS-----ATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREAL 701
            S+D ++  K KGN  FK  ++ +A+  Y+EAI L  T      +T+Y NRAAA+ +L  +++  +DC+K + L+ K VKA  RR  A E L
Sbjct:  110 SLDRAQAAKNKGNKYFKAGKYEQAIQCYTEAISLCPTEKNVDLSTFYQNRAAAFEQLQKWKEVAQDCTKAVELNPKYVKALFRRAKAHEKL 200          
BLAST of CX294993 vs. ExPASy Swiss-Prot
Match: STIP1_RAT (Stress-induced-phosphoprotein 1 OS=Rattus norvegicus GN=Stip1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.933e-11
Identity = 36/84 (42.86%), Postives = 50/84 (59.52%), Query Frame = 3
Query:  468 KEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALLYYNEA 719
            K KGN  F+   + +A+ +Y+EAIK N   A  YSNRAA Y +L  FQ A +DC + I L+   +K Y R+  A EA+  Y +A
Sbjct:  364 KNKGNECFQKGDYPQAMKHYTEAIKRNPRDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKA 447          
BLAST of CX294993 vs. ExPASy Swiss-Prot
Match: STIP1_MOUSE (Stress-induced-phosphoprotein 1 OS=Mus musculus GN=Stip1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.933e-11
Identity = 36/84 (42.86%), Postives = 50/84 (59.52%), Query Frame = 3
Query:  468 KEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALLYYNEA 719
            K KGN  F+   + +A+ +Y+EAIK N   A  YSNRAA Y +L  FQ A +DC + I L+   +K Y R+  A EA+  Y +A
Sbjct:  364 KNKGNECFQKGDYPQAMKHYTEAIKRNPRDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKA 447          
BLAST of CX294993 vs. ExPASy Swiss-Prot
Match: STIP1_MACFA (Stress-induced-phosphoprotein 1 OS=Macaca fascicularis GN=STIP1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.933e-11
Identity = 36/84 (42.86%), Postives = 50/84 (59.52%), Query Frame = 3
Query:  468 KEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALLYYNEA 719
            K KGN  F+   + +A+ +Y+EAIK N   A  YSNRAA Y +L  FQ A +DC + I L+   +K Y R+  A EA+  Y +A
Sbjct:  364 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKA 447          
BLAST of CX294993 vs. ExPASy Swiss-Prot
Match: STIP1_HUMAN (Stress-induced-phosphoprotein 1 OS=Homo sapiens GN=STIP1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.933e-11
Identity = 36/84 (42.86%), Postives = 50/84 (59.52%), Query Frame = 3
Query:  468 KEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALLYYNEA 719
            K KGN  F+   + +A+ +Y+EAIK N   A  YSNRAA Y +L  FQ A +DC + I L+   +K Y R+  A EA+  Y +A
Sbjct:  364 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKA 447          
BLAST of CX294993 vs. ExPASy Swiss-Prot
Match: STIP1_CRIGR (Stress-induced-phosphoprotein 1 OS=Cricetulus griseus GN=STIP1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.933e-11
Identity = 36/84 (42.86%), Postives = 50/84 (59.52%), Query Frame = 3
Query:  468 KEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALLYYNEA 719
            K KGN  F+   + +A+ +Y+EAIK N   A  YSNRAA Y +L  FQ A +DC + I L+   +K Y R+  A EA+  Y +A
Sbjct:  364 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKA 447          
The following BLAST results are available for this feature:
BLAST of CX294993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
SGTB_RAT2.306e-1138.83Small glutamine-rich tetratricopeptide repeat-cont... [more]
SGTB_MOUSE2.306e-1138.83Small glutamine-rich tetratricopeptide repeat-cont... [more]
SGTA_RAT2.306e-1140.38Small glutamine-rich tetratricopeptide repeat-cont... [more]
SGTA_MOUSE2.306e-1140.38Small glutamine-rich tetratricopeptide repeat-cont... [more]
TOM70_HUMAN3.011e-1139.56Mitochondrial import receptor subunit TOM70 OS=Hom... [more]
STIP1_RAT3.933e-1142.86Stress-induced-phosphoprotein 1 OS=Rattus norvegic... [more]
STIP1_MOUSE3.933e-1142.86Stress-induced-phosphoprotein 1 OS=Mus musculus GN... [more]
STIP1_MACFA3.933e-1142.86Stress-induced-phosphoprotein 1 OS=Macaca fascicul... [more]
STIP1_HUMAN3.933e-1142.86Stress-induced-phosphoprotein 1 OS=Homo sapiens GN... [more]
STIP1_CRIGR3.933e-1142.86Stress-induced-phosphoprotein 1 OS=Cricetulus gris... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05065D08SK DroRLeaf1 Citrus clementina cDNA clone C05065D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294993 ID=CX294993; Name=CX294993; organism=Citrus clementina; type=EST; length=719bp
GAGGGTTAATCAGCCAACCAAGGTTAGGATATAATGTCTTTGAACGTGTT
CTTGAAGCAATTAATACAACACAAGACAACATCAAAATCTTATACAAAGT
CCGAAATGAGATGCGGGCAGCCCTTCAAAGGTTATTAAAGGATGATAAAA
TACTGGTCATTCCCACAGTTTCAGATCCTCCATTAAAGCTTAATACAAAG
AAAACTTATTCTGCTGAATTTCATGATAGAACACTTGTGCTATCAAGCAT
CGGAAGCATGTCTGGTTGCTGTCAGGTTGCCATTCCAATAGGAAAGTACA
ATGAGCATCCCATTTCTATTTCATTTATCACGTACCATGGTGGCGATAAA
TTTCTTCTTGATACAGTCTTAGATCTGTATGATTCCCTCCAAGAACAAGT
GAACATCGCTTCTAATTTAGTGCCACTGCCGGATACAAATGGTAGCATTG
ATGCTTCTGAACTTTTGAAAGAGAAGGGAAATGCTGCATTTAAAGGAAAG
CAATGGAATAAGGCTGTGAATTATTACAGTGAAGCTATTAAATTGAATGG
AACAAGTGCAACTTATTATTCGAACCGGGCAGCAGCTTACTTAGAATTAG
GATGCTTCCAACAAGCTGAAGAAGACTGCAGTAAGACAATTTCACTTGAT
AAGAAGAATGTGAAAGCTTATTTGAGACGGGGAACAGCTAGAGAGGCTCT
TCTCTATTATAACGAGGCT
back to top