CX294993

Overview
NameCX294993
Unique NameCX294993
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294993 vs. ExPASy Swiss-Prot
Match: STIP1_BOVIN (Stress-induced-phosphoprotein 1 OS=Bos taurus GN=STIP1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.933e-11
Identity = 36/84 (42.86%), Postives = 50/84 (59.52%), Query Frame = 3
Query:  468 KEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALLYYNEA 719
            K KGN  F+   + +A+ +Y+EAIK N   A  YSNRAA Y +L  FQ A +DC + I L+   +K Y R+  A EA+  Y +A
Sbjct:  364 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKA 447          
BLAST of CX294993 vs. ExPASy Swiss-Prot
Match: STIP_SOYBN (Heat shock protein STI OS=Glycine max GN=STI PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.136e-11
Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = 3
Query:  468 KEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALLYYNEA 719
            +EKGN  FK +++ +A  +Y+EAIK N   A  YSNRAA Y +LG   +  +D  K I LD    K Y R+G  + ++  Y++A
Sbjct:  385 REKGNELFKQQKYPEATKHYTEAIKRNPKDAKAYSNRAACYTKLGAMPEGLKDAEKCIELDPTFSKGYTRKGAVQFSMKEYDKA 468          
BLAST of CX294993 vs. ExPASy Swiss-Prot
Match: DNJC7_MOUSE (DnaJ homolog subfamily C member 7 OS=Mus musculus GN=Dnajc7 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.136e-11
Identity = 33/82 (40.24%), Postives = 52/82 (63.41%), Query Frame = 3
Query:  456 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREAL 701
            +E  KE+GNA +  K +N+A NYY++AI +   +A+YY NRAA  + LG F++A  D  +++ LD   V+ +LR G    +L
Sbjct:   28 AESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPNNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSL 109          
BLAST of CX294993 vs. ExPASy Swiss-Prot
Match: DNJC7_HUMAN (DnaJ homolog subfamily C member 7 OS=Homo sapiens GN=DNAJC7 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.136e-11
Identity = 33/82 (40.24%), Postives = 52/82 (63.41%), Query Frame = 3
Query:  456 SELLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREAL 701
            +E  KE+GNA +  K +N+A NYY++AI +   +A+YY NRAA  + LG F++A  D  +++ LD   V+ +LR G    +L
Sbjct:   28 AETFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSL 109          
BLAST of CX294993 vs. ExPASy Swiss-Prot
Match: RPAP3_RAT (RNA polymerase II-associated protein 3 OS=Rattus norvegicus GN=Rpap3 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 43/136 (31.62%), Postives = 68/136 (50.00%), Query Frame = 3
Query:  318 ISFITYHGGDKFLLDTVLDLYDSLQEQVNIASNLVPLPDTNGSIDASE--LLKEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALLYYNEA 719
            I    Y    K  +D++LD  D      +  S      +    +D+ +  +LKEKGN  FK  ++++A+  Y++ +  +  +    +NRA+AY  L  F  AE DC+  I+L +   KAY RRG AR AL    +A
Sbjct:   85 IKSFDYDAWAKLDVDSILDELDKEDSTHDSVSQESESDEDGVRVDSQKALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRSYTKAYARRGAARFALQKLEDA 220          

HSP 2 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 35/84 (41.67%), Postives = 52/84 (61.90%), Query Frame = 3
Query:  468 KEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALLYYNEA 719
            K+ GN  FK  ++ +A+  Y+  I  + T+A   +NRA AYL++  +++AE DC++ I LD    KA+ RRGTAR  L   NEA
Sbjct:  286 KDLGNGFFKEGKYEQAIECYTRGIAADSTNALLPANRAMAYLKVQKYEEAERDCTQAILLDGSYSKAFARRGTARTFLGKINEA 369          
BLAST of CX294993 vs. ExPASy Swiss-Prot
Match: RPAP3_XENTR (RNA polymerase II-associated protein 3 OS=Xenopus tropicalis GN=rpap3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 36/84 (42.86%), Postives = 54/84 (64.29%), Query Frame = 3
Query:  468 KEKGNAAFKGKQWNKAVNYYSEAIKLNGTSATYYSNRAAAYLELGCFQQAEEDCSKTISLDKKNVKAYLRRGTAREALLYYNEA 719
            K+ GNA FK  ++  A++ YS+ ++ + T+A   +NRA AYL++  +++AE DC+  ISLD    KA+ RRGTAR  L    EA
Sbjct:  288 KDLGNAYFKEGKYEIAIDCYSQGMEADTTNALLPANRAMAYLKIQKYKEAETDCTLAISLDASYCKAFARRGTARIMLGKQKEA 371          
The following BLAST results are available for this feature:
BLAST of CX294993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
STIP1_BOVIN3.933e-1142.86Stress-induced-phosphoprotein 1 OS=Bos taurus GN=S... [more]
STIP_SOYBN5.136e-1140.48Heat shock protein STI OS=Glycine max GN=STI PE=2 ... [more]
DNJC7_MOUSE5.136e-1140.24DnaJ homolog subfamily C member 7 OS=Mus musculus ... [more]
DNJC7_HUMAN5.136e-1140.24DnaJ homolog subfamily C member 7 OS=Homo sapiens ... [more]
RPAP3_RAT6.708e-1131.62RNA polymerase II-associated protein 3 OS=Rattus n... [more]
RPAP3_XENTR8.761e-1142.86RNA polymerase II-associated protein 3 OS=Xenopus ... [more]

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Properties
Property NameValue
Genbank descriptionC05065D08SK DroRLeaf1 Citrus clementina cDNA clone C05065D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294993 ID=CX294993; Name=CX294993; organism=Citrus clementina; type=EST; length=719bp
GAGGGTTAATCAGCCAACCAAGGTTAGGATATAATGTCTTTGAACGTGTT
CTTGAAGCAATTAATACAACACAAGACAACATCAAAATCTTATACAAAGT
CCGAAATGAGATGCGGGCAGCCCTTCAAAGGTTATTAAAGGATGATAAAA
TACTGGTCATTCCCACAGTTTCAGATCCTCCATTAAAGCTTAATACAAAG
AAAACTTATTCTGCTGAATTTCATGATAGAACACTTGTGCTATCAAGCAT
CGGAAGCATGTCTGGTTGCTGTCAGGTTGCCATTCCAATAGGAAAGTACA
ATGAGCATCCCATTTCTATTTCATTTATCACGTACCATGGTGGCGATAAA
TTTCTTCTTGATACAGTCTTAGATCTGTATGATTCCCTCCAAGAACAAGT
GAACATCGCTTCTAATTTAGTGCCACTGCCGGATACAAATGGTAGCATTG
ATGCTTCTGAACTTTTGAAAGAGAAGGGAAATGCTGCATTTAAAGGAAAG
CAATGGAATAAGGCTGTGAATTATTACAGTGAAGCTATTAAATTGAATGG
AACAAGTGCAACTTATTATTCGAACCGGGCAGCAGCTTACTTAGAATTAG
GATGCTTCCAACAAGCTGAAGAAGACTGCAGTAAGACAATTTCACTTGAT
AAGAAGAATGTGAAAGCTTATTTGAGACGGGGAACAGCTAGAGAGGCTCT
TCTCTATTATAACGAGGCT
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