CX294998

Overview
NameCX294998
Unique NameCX294998
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294998 vs. ExPASy Swiss-Prot
Match: CP3AR_ONCMY (Cytochrome P450 3A27 OS=Oncorhynchus mykiss GN=cyp3a27 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.192e-21
Identity = 53/132 (40.15%), Postives = 77/132 (58.33%), Query Frame = 1
Query:    1 VFGNNKP-DYHGLNHLKIVQMIFNEVLRLYPPAVMLARAVNKETKLGNLILPAGVQISLPVIMVHHDPELWGDDAIEFKPERFSEGISKVTRNQVSYFPFAWGPRICIGLNFALVEAKIALAMILQNFSFEL 393
            VF N  P  Y  L  +  +  + NE LRLYP A  L R   K  ++  +++P    + +P   +H DPE+W D   EFKPERFS+  +K + +  +Y PF  GPR CIG+ FAL+  K+A+  ILQ+F+F +
Sbjct:  343 VFPNKAPIQYEALMQMDYLDCVLNESLRLYPIAPRLERVAKKTVEINGIVIPKDCIVLVPTWTLHRDPEIWSDPE-EFKPERFSKE-NKESIDPYTYMPFGAGPRNCIGMRFALIMIKLAMVEILQSFTFSV 472          
BLAST of CX294998 vs. ExPASy Swiss-Prot
Match: CP3A2_RAT (Cytochrome P450 3A2 OS=Rattus norvegicus GN=Cyp3a2 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.192e-21
Identity = 52/124 (41.94%), Postives = 74/124 (59.68%), Query Frame = 1
Query:   19 PDYHGLNHLKIVQMIFNEVLRLYPPAVMLARAVNKETKLGNLILPAGVQISLPVIMVHHDPELWGDDAIEFKPERFSEGISKVTRNQVSYFPFAWGPRICIGLNFALVEAKIALAMILQNFSFE 390
            P Y  +  ++ + M+ NE LRLYP    L R   K+ +L  L +P G  +++P   +HHDP+ W     EF PERFS+  +K + +   Y PF  GPR CIG+ FAL+  K+AL  +LQNFSF+
Sbjct:  346 PTYDIVMEMEYLDMVLNETLRLYPIGNRLERVCKKDIELDGLFIPKGSVVTIPTYALHHDPQHWPKPE-EFHPERFSKE-NKGSIDPYVYLPFGNGPRNCIGMRFALMNMKLALTKVLQNFSFQ 467          
BLAST of CX294998 vs. ExPASy Swiss-Prot
Match: CP3AG_MOUSE (Cytochrome P450 3A16 OS=Mus musculus GN=Cyp3a16 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.475e-21
Identity = 50/124 (40.32%), Postives = 76/124 (61.29%), Query Frame = 1
Query:   19 PDYHGLNHLKIVQMIFNEVLRLYPPAVMLARAVNKETKLGNLILPAGVQISLPVIMVHHDPELWGDDAIEFKPERFSEGISKVTRNQVSYFPFAWGPRICIGLNFALVEAKIALAMILQNFSFE 390
            P Y  +  ++ + M+ NE LRLYP    L R   K+ ++  + +P G  + +P  ++HHDP+ W +   EF+PERFS+  +K + +   Y PF  GPR CIG+ FAL+  K+AL  +LQNFSF+
Sbjct:  346 PTYDTVMAMEYLDMVLNETLRLYPITNRLQRVCKKDVEINGIYIPKGSTVIIPSYVLHHDPQHWPEPE-EFQPERFSKE-NKGSIDPYVYLPFGNGPRNCIGMRFALMNMKLALIKVLQNFSFQ 467          
BLAST of CX294998 vs. ExPASy Swiss-Prot
Match: C13A7_CAEEL (Putative cytochrome P450 CYP13A7 OS=Caenorhabditis elegans GN=cyp-13A7 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.475e-21
Identity = 52/126 (41.27%), Postives = 78/126 (61.90%), Query Frame = 1
Query:   34 LNHLKIVQMIFNEVLRLYPPAVMLA-RAVNKETKLGNLILPAGVQISLPVIMVHHDPELWGDDAIEFKPERFSEGISKVTRNQVSYFPFAWGPRICIGLNFALVEAKIALAMILQNFSFELSPSYV 408
            L+ LK ++ +  E LRLYP A ++  R   K T +  + + AG  I++    +HHDP++WGDD  EFKPER+  G  ++   +  Y PF  GPRICIG+  A++E K+ L  IL+N++FE +P  V
Sbjct:  370 LSKLKYLECVVKEALRLYPLASLVHNRKCLKTTNVLGMEIEAGTNINVDTWSLHHDPKVWGDDVNEFKPERWESG-DELFFAKGGYLPFGMGPRICIGMRLAMMEMKMLLTNILKNYTFETTPETV 494          
BLAST of CX294998 vs. ExPASy Swiss-Prot
Match: C13A1_CAEEL (Putative cytochrome P450 CYP13A1 OS=Caenorhabditis elegans GN=cyp-13A1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.220e-20
Identity = 52/120 (43.33%), Postives = 70/120 (58.33%), Query Frame = 1
Query:   34 LNHLKIVQMIFNEVLRLYP-PAVMLARAVNKETKLGNLILPAGVQISLPVIMVHHDPELWGDDAIEFKPERFSEGISKVTRNQVSYFPFAWGPRICIGLNFALVEAKIALAMILQNFSFE 390
            L+ LK ++ +F E LRLYP  A   +R   + TKLGN+ +  G  I +    +H DP +WGDDA +FKPER+    S     +  Y PF  GPR CIG+  A +E KI L  IL+ F+FE
Sbjct:  370 LSKLKYMECVFKEALRLYPLGAFANSRRCMRNTKLGNMKVEVGTMIQVDTWTLHTDPNIWGDDAEDFKPERWQTPNSDQIYQKSGYIPFGLGPRQCIGMRLAYMEEKILLVHILRKFTFE 489          
BLAST of CX294998 vs. ExPASy Swiss-Prot
Match: CP341_MOUSE (Cytochrome P450 3A41 OS=Mus musculus GN=Cyp3a41a PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.081e-20
Identity = 49/124 (39.52%), Postives = 74/124 (59.68%), Query Frame = 1
Query:   19 PDYHGLNHLKIVQMIFNEVLRLYPPAVMLARAVNKETKLGNLILPAGVQISLPVIMVHHDPELWGDDAIEFKPERFSEGISKVTRNQVSYFPFAWGPRICIGLNFALVEAKIALAMILQNFSFE 390
            P Y  +  ++ + M+ NE LRLYP    L R   K+ +L  + +P G  + +P   +HHDP+ W +   EF+PERFS+  +K + +   Y PF  GPR CIG+ FA +  K+AL  ++QNFSF+
Sbjct:  346 PTYDTVMEMEYLDMVLNETLRLYPIGNRLERFCKKDVELNGVYIPKGSTVMIPSYALHHDPQHWPEPE-EFQPERFSKE-NKGSIDPYLYMPFGIGPRNCIGMRFAFMTMKLALTKVMQNFSFQ 467          
BLAST of CX294998 vs. ExPASy Swiss-Prot
Match: CP3A1_RAT (Cytochrome P450 3A1 OS=Rattus norvegicus GN=Cyp3a1 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.717e-20
Identity = 49/124 (39.52%), Postives = 74/124 (59.68%), Query Frame = 1
Query:   19 PDYHGLNHLKIVQMIFNEVLRLYPPAVMLARAVNKETKLGNLILPAGVQISLPVIMVHHDPELWGDDAIEFKPERFSEGISKVTRNQVSYFPFAWGPRICIGLNFALVEAKIALAMILQNFSFE 390
            P Y  +  ++ + M+ NE LRLYP    L R   K+ ++  + +P G  + +P   +H DP+ W +   EF+PERFS+  +K + +   Y PF  GPR CIG+ FAL+  K+AL  +LQNFSF+
Sbjct:  346 PTYDTVMEMEYLDMVLNETLRLYPIGNRLERVCKKDVEINGVFMPKGSVVMIPSYALHRDPQHWPEPE-EFRPERFSKE-NKGSIDPYVYLPFGNGPRNCIGMRFALMNMKLALTKVLQNFSFQ 467          
BLAST of CX294998 vs. ExPASy Swiss-Prot
Match: CP3A6_RABIT (Cytochrome P450 3A6 OS=Oryctolagus cuniculus GN=CYP3A6 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.635e-20
Identity = 50/123 (40.65%), Postives = 72/123 (58.54%), Query Frame = 1
Query:   25 YHGLNHLKIVQMIFNEVLRLYPPAVMLARAVNKETKLGNLILPAGVQISLPVIMVHHDPELWGDDAIEFKPERFSEGISKVTRNQVSYFPFAWGPRICIGLNFALVEAKIALAMILQNFSFEL 393
            Y  L  ++ + M+ NE LRLYP A  L R   K+  +    +P G  + +P   +H DP+ W +   EF+PERFS+  +K   N   Y PF  GPR C+G+ FAL+  K+AL  ++QNFSF+L
Sbjct:  345 YDTLVKMEYLDMVVNETLRLYPIAGRLERVCKKDVDINGTFIPKGTIVMMPTYALHRDPQHWTEPD-EFRPERFSKK-NKDNINPYIYHPFGAGPRNCLGMRFALMNIKLALVRLMQNFSFKL 465          
BLAST of CX294998 vs. ExPASy Swiss-Prot
Match: CP3A4_HUMAN (Cytochrome P450 3A4 OS=Homo sapiens GN=CYP3A4 PE=1 SV=4)

HSP 1 Score: 98.2117 bits (243), Expect = 4.635e-20
Identity = 49/124 (39.52%), Postives = 75/124 (60.48%), Query Frame = 1
Query:   19 PDYHGLNHLKIVQMIFNEVLRLYPPAVMLARAVNKETKLGNLILPAGVQISLPVIMVHHDPELWGDDAIEFKPERFSEGISKVTRNQVSYFPFAWGPRICIGLNFALVEAKIALAMILQNFSFE 390
            P Y  +  ++ + M+ NE LRL+P A+ L R   K+ ++  + +P GV + +P   +H DP+ W +   +F PERFS+  +K   +   Y PF  GPR CIG+ FAL+  K+AL  +LQNFSF+
Sbjct:  345 PTYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEINGMFIPKGVVVMIPSYALHRDPKYWTEPE-KFLPERFSKK-NKDNIDPYIYTPFGSGPRNCIGMRFALMNMKLALIRVLQNFSFK 466          
BLAST of CX294998 vs. ExPASy Swiss-Prot
Match: CP3AL_CALJA (Cytochrome P450 3A21 OS=Callithrix jacchus GN=CYP3A21 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.053e-20
Identity = 51/131 (38.93%), Postives = 78/131 (59.54%), Query Frame = 1
Query:    1 VFGNNKP-DYHGLNHLKIVQMIFNEVLRLYPPAVMLARAVNKETKLGNLILPAGVQISLPVIMVHHDPELWGDDAIEFKPERFSEGISKVTRNQVSYFPFAWGPRICIGLNFALVEAKIALAMILQNFSFE 390
            V  N  P  Y  +  ++ + M+ NE LRL+P A+ L R   K+ ++  + +P GV + +P   +H+DP+ W +   +F PERFS+  +K   +   Y PF  GPR CIG+ FAL+  K+AL  +LQNFSF+
Sbjct:  338 VLPNKAPATYDTVLQMEYLDMVVNETLRLFPLAMRLERVCKKDVEINGVFIPKGVVVMIPSYALHYDPKYWTEPE-KFLPERFSKN-NKDNIDPYIYTPFGTGPRNCIGMRFALMNMKLALIRVLQNFSFK 466          
The following BLAST results are available for this feature:
BLAST of CX294998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
CP3AR_ONCMY4.192e-2140.15Cytochrome P450 3A27 OS=Oncorhynchus mykiss GN=cyp... [more]
CP3A2_RAT4.192e-2141.94Cytochrome P450 3A2 OS=Rattus norvegicus GN=Cyp3a2... [more]
CP3AG_MOUSE5.475e-2140.32Cytochrome P450 3A16 OS=Mus musculus GN=Cyp3a16 PE... [more]
C13A7_CAEEL5.475e-2141.27Putative cytochrome P450 CYP13A7 OS=Caenorhabditis... [more]
C13A1_CAEEL1.220e-2043.33Putative cytochrome P450 CYP13A1 OS=Caenorhabditis... [more]
CP341_MOUSE2.081e-2039.52Cytochrome P450 3A41 OS=Mus musculus GN=Cyp3a41a P... [more]
CP3A1_RAT2.717e-2039.52Cytochrome P450 3A1 OS=Rattus norvegicus GN=Cyp3a1... [more]
CP3A6_RABIT4.635e-2040.65Cytochrome P450 3A6 OS=Oryctolagus cuniculus GN=CY... [more]
CP3A4_HUMAN4.635e-2039.52Cytochrome P450 3A4 OS=Homo sapiens GN=CYP3A4 PE=1... [more]
CP3AL_CALJA6.053e-2038.93Cytochrome P450 3A21 OS=Callithrix jacchus GN=CYP3... [more]

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Properties
Property NameValue
Genbank descriptionC05065E02SK DroRLeaf1 Citrus clementina cDNA clone C05065E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294998 ID=CX294998; Name=CX294998; organism=Citrus clementina; type=EST; length=717bp
GTTTTTGGCAATAATAAGCCAGATTATCATGGATTGAATCACCTCAAAAT
TGTTCAAATGATATTCAACGAGGTACTGAGGCTTTATCCTCCAGCAGTTA
TGCTTGCTCGAGCTGTTAATAAAGAAACGAAACTTGGAAACTTGATATTA
CCCGCTGGGGTTCAAATCAGTTTGCCAGTGATCATGGTTCACCATGATCC
TGAACTTTGGGGTGATGATGCCATTGAGTTTAAACCTGAGAGGTTCTCTG
AAGGAATTTCAAAGGTGACCAGGAATCAAGTTTCTTATTTCCCATTTGCA
TGGGGTCCTAGGATATGCATTGGACTAAATTTCGCCCTGGTTGAGGCGAA
AATTGCTTTGGCAATGATTCTGCAAAATTTCTCATTCGAGTTGTCTCCGT
CCTATGTTCATGCTCCGACCGCAGTTCTAACTCTTCATCCAGAATTCGGT
ACCCACTTGATTCTACGGAAACTGTAGTGTGAGAATAATACAAGTAAATA
GTATATCATCAATAAGATTAGCATGATGCTAAATTTCCTTGCCGTTGTAA
TGAAGTTCAGAGCTTGGGCAGCAGCTGTTTGTGTGTGTATTATACACACA
CACACACACACACACACACACAAATTAGATTTTTGTATTGACAATACGTG
AGTTGAATCCATTTTTAAGGAATCATAATTATCACATCCCACATTGTCAT
TGTTTAGATGGTTTCAT
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