CX294998

Overview
NameCX294998
Unique NameCX294998
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294998 vs. ExPASy Swiss-Prot
Match: CP3AD_MOUSE (Cytochrome P450 3A13 OS=Mus musculus GN=Cyp3a13 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.053e-20
Identity = 48/122 (39.34%), Postives = 72/122 (59.02%), Query Frame = 1
Query:   25 YHGLNHLKIVQMIFNEVLRLYPPAVMLARAVNKETKLGNLILPAGVQISLPVIMVHHDPELWGDDAIEFKPERFSEGISKVTRNQVSYFPFAWGPRICIGLNFALVEAKIALAMILQNFSFE 390
            Y  L  ++ + M+ NE LRLYP A  L R    + ++  L +P G  + +P   +H DP+ W +   EF+PERFS+  ++ + N   Y PF  GPR CIG+ FAL+  K+AL  +LQNF+ +
Sbjct:  347 YDTLLQMEYLDMVVNETLRLYPIAGRLERVCKTDVEINGLFIPKGTVVMIPTFALHKDPKYWPEPE-EFRPERFSKK-NQDSINPYMYLPFGSGPRNCIGMRFALINMKVALVRVLQNFTVQ 466          
BLAST of CX294998 vs. ExPASy Swiss-Prot
Match: CP3A9_RAT (Cytochrome P450 3A9 OS=Rattus norvegicus GN=Cyp3a9 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.053e-20
Identity = 49/122 (40.16%), Postives = 71/122 (58.20%), Query Frame = 1
Query:   25 YHGLNHLKIVQMIFNEVLRLYPPAVMLARAVNKETKLGNLILPAGVQISLPVIMVHHDPELWGDDAIEFKPERFSEGISKVTRNQVSYFPFAWGPRICIGLNFALVEAKIALAMILQNFSFE 390
            Y  L  ++ + M+ NE LRLYP A  L R    + ++  + +P G  + +P   +H DP  W +   EF+PERFS+  ++   N   Y PF  GPR CIG+ FAL+  K+AL  +LQNFSF+
Sbjct:  347 YDTLLQMEYLDMVVNETLRLYPIAGRLERVCKTDVEINGVFIPKGTVVMIPTFALHKDPHYWPEPE-EFRPERFSKK-NQDNINPYMYLPFGNGPRNCIGMRFALMNMKVALFRVLQNFSFQ 466          
BLAST of CX294998 vs. ExPASy Swiss-Prot
Match: CP3A8_MACFA (Cytochrome P450 3A8 OS=Macaca fascicularis GN=CYP3A8 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.053e-20
Identity = 47/124 (37.90%), Postives = 75/124 (60.48%), Query Frame = 1
Query:   19 PDYHGLNHLKIVQMIFNEVLRLYPPAVMLARAVNKETKLGNLILPAGVQISLPVIMVHHDPELWGDDAIEFKPERFSEGISKVTRNQVSYFPFAWGPRICIGLNFALVEAKIALAMILQNFSFE 390
            P Y  +  ++ + M+ NE LR++P A+ L R   K+ ++  + +P GV + +P   +HHDP+ W +   +F PERFS+  +    +   Y PF  GPR CIG+ FAL+  K+A+  +LQNFSF+
Sbjct:  345 PTYDTVLQMEYLDMVVNETLRIFPIAMRLERVCKKDVEINGIFIPKGVVVMIPSYALHHDPKYWPEPE-KFLPERFSKK-NNDNIDPYIYTPFGSGPRNCIGMRFALMNMKLAIIRVLQNFSFK 466          
BLAST of CX294998 vs. ExPASy Swiss-Prot
Match: CP3AV_MESAU (Cytochrome P450 3A31 OS=Mesocricetus auratus GN=CYP3A31 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.761e-19
Identity = 46/125 (36.80%), Postives = 76/125 (60.80%), Query Frame = 1
Query:   16 KPDYHGLNHLKIVQMIFNEVLRLYPPAVMLARAVNKETKLGNLILPAGVQISLPVIMVHHDPELWGDDAIEFKPERFSEGISKVTRNQVSYFPFAWGPRICIGLNFALVEAKIALAMILQNFSFE 390
            +P Y  +  ++ + M+ NE LRLYP    L R   ++ ++  + +P G  + +PV  +H+DP+ W +   +F+PERFS+  +K + +   + PF  GPR CIG+ FAL+  K+AL  +LQNFS +
Sbjct:  342 RPSYDKVMEMEYLDMVLNETLRLYPIGSRLERVCKQDVEMDGVFVPKGSIVMVPVFALHYDPQYWPEPE-KFRPERFSKE-NKGSIDPYIFLPFGNGPRNCIGMRFALMNMKLALTKVLQNFSLQ 464          
BLAST of CX294998 vs. ExPASy Swiss-Prot
Match: CP3AI_RAT (Cytochrome P450 3A18 OS=Rattus norvegicus GN=Cyp3a18 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.300e-19
Identity = 47/122 (38.52%), Postives = 74/122 (60.66%), Query Frame = 1
Query:   25 YHGLNHLKIVQMIFNEVLRLYPPAVMLARAVNKETKLGNLILPAGVQISLPVIMVHHDPELWGDDAIEFKPERFSEGISKVTRNQVSYFPFAWGPRICIGLNFALVEAKIALAMILQNFSFE 390
            Y  L  ++ + M+ NE LRLYP A  L R   K+ ++  + +P G  +++P+  +H +PE W +   EF PERFS+  +K + +   Y PF  GPR CIG+ FAL+  K+A+  +LQNF+ +
Sbjct:  347 YDALMEMEYLDMVVNESLRLYPIATRLDRVSKKDVEINGVFIPKGTVVTIPIYPLHRNPEYWLEPE-EFNPERFSKE-NKGSIDPYVYLPFGNGPRNCIGMRFALISMKLAVIGVLQNFNIQ 466          
BLAST of CX294998 vs. ExPASy Swiss-Prot
Match: CP3AA_MESAU (Lithocholate 6-beta-hydroxylase OS=Mesocricetus auratus GN=CYP3A10 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.300e-19
Identity = 49/122 (40.16%), Postives = 73/122 (59.84%), Query Frame = 1
Query:   25 YHGLNHLKIVQMIFNEVLRLYPPAVMLARAVNKETKLGNLILPAGVQISLPVIMVHHDPELWGDDAIEFKPERFSEGISKVTRNQVSYFPFAWGPRICIGLNFALVEAKIALAMILQNFSFE 390
            Y  L  ++ + M+ NE LRLYP A  L R   K  ++  L +P G+ + +P   +H DPE W +   EF+PERFS+  +K + +   Y PF  GPR CIG+ FAL+  K+A+  +LQNF+ +
Sbjct:  347 YDVLMGMEYLDMVINEGLRLYPIANRLERISKKAVEINGLFIPKGITVMVPTYPLHRDPEYWPEPE-EFRPERFSKE-NKGSIDPYVYMPFGNGPRNCIGMRFALLSMKLAVVSVLQNFTLQ 466          
BLAST of CX294998 vs. ExPASy Swiss-Prot
Match: CP343_HUMAN (Cytochrome P450 3A43 OS=Homo sapiens GN=CYP3A43 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.300e-19
Identity = 49/131 (37.40%), Postives = 76/131 (58.02%), Query Frame = 1
Query:    1 VFGNNKP-DYHGLNHLKIVQMIFNEVLRLYPPAVMLARAVNKETKLGNLILPAGVQISLPVIMVHHDPELWGDDAIEFKPERFSEGISKVTRNQVSYFPFAWGPRICIGLNFALVEAKIALAMILQNFSFE 390
            V  N  P  Y  L  ++ + M+ NE LRL+P    + R   K+ ++  + +P G+ + +P+  +HHDP+ W +   +F PERFS+  +K + +   Y PF  GPR CIG+ FAL   K+A+   LQNFSF+
Sbjct:  338 VLPNKAPVTYDALVQMEYLDMVVNETLRLFPVVSRVTRVCKKDIEINGVFIPKGLAVMVPIYALHHDPKYWTEPE-KFCPERFSKK-NKDSIDLYRYIPFGAGPRNCIGMRFALTNIKLAVIRALQNFSFK 466          
BLAST of CX294998 vs. ExPASy Swiss-Prot
Match: CP4AP_PIG (Cytochrome P450 4A25 OS=Sus scrofa GN=CYP4A25 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 59/150 (39.33%), Postives = 86/150 (57.33%), Query Frame = 1
Query:   34 LNHLKIVQMIFNEVLRLYPPAVMLARAVNKE-TKLGNLILPAGVQISLPVIMVHHDPELWGDDAIEFKPERFSEGISKVTRNQVSYFPFAWGPRICIGLNFALVEAKIALAMILQNFSFELSPSYVHAPTAV--LTLHPEFGTHLILRKL 474
            L+ +    M   E LRLYPP   ++R ++K  T      LPAG+ +SL V  +HH+P++W +   EF P RF+ G +   R+  ++ PF+ G R CIG  FA+ E K+A+A+ L    FEL+P     PT +  + LH + G HL LRKL
Sbjct:  360 LDQMPYTTMCIKEALRLYPPVPGVSRELSKPITFPDGRSLPAGIILSLSVYSLHHNPQVWPNPE-EFDPSRFAPGSA---RHSHAFMPFSGGSRNCIGKQFAMNEMKVAVALTL--LRFELAPDPSRKPTVIPEVVLHSKNGIHLKLRKL 503          
BLAST of CX294998 vs. ExPASy Swiss-Prot
Match: CP3AP_MOUSE (Cytochrome P450 3A25 OS=Mus musculus GN=Cyp3a25 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 47/122 (38.52%), Postives = 73/122 (59.84%), Query Frame = 1
Query:   25 YHGLNHLKIVQMIFNEVLRLYPPAVMLARAVNKETKLGNLILPAGVQISLPVIMVHHDPELWGDDAIEFKPERFSEGISKVTRNQVSYFPFAWGPRICIGLNFALVEAKIALAMILQNFSFE 390
            Y  L  ++ + M+ NE LRLYP A+ L R   K+ ++  + +P G  + +P+  +H +PE W +   EF PERFS+  +K   +   Y PF  GPR CIG+ FAL+  K+A+  +LQNF+ +
Sbjct:  347 YDALMDMEYLDMVVNESLRLYPIAIRLERVSKKDVEINGVFIPKGTVVMIPIYPLHRNPEYWPEPQ-EFCPERFSKE-NKGNIDPYIYMPFGNGPRNCIGMRFALISIKLAVIGVLQNFTVQ 466          
BLAST of CX294998 vs. ExPASy Swiss-Prot
Match: C340_ORYLA (Cytochrome P450 3A40 OS=Oryzias latipes GN=cyp3a40 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.125e-19
Identity = 52/131 (39.69%), Postives = 75/131 (57.25%), Query Frame = 1
Query:    4 FGNNKP-DYHGLNHLKIVQMIFNEVLRLYPPAVMLARAVNKETKLGNLILPAGVQISLPVIMVHHDPELWGDDAIEFKPERFSEGISKVTRNQVSYFPFAWGPRICIGLNFALVEAKIALAMILQNFSFEL 393
            F N  P  Y  L  ++ +  + NE LRLYP A  L R      ++  L++P  + + +P   +H DPELW +   +FKPERFS+  +K T +  +Y PF  GPR CIG+ FALV  K+A+  ILQ + F +
Sbjct:  340 FPNKAPVQYVPLMEMEYLDCVVNESLRLYPIAARLERVAKATVEVNGLVIPKDMVVMVPTWPLHRDPELWPEPE-KFKPERFSKE-NKDTFDPYTYMPFGAGPRNCIGMRFALVMMKLAVVEILQTYDFSV 468          
The following BLAST results are available for this feature:
BLAST of CX294998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
CP3AD_MOUSE6.053e-2039.34Cytochrome P450 3A13 OS=Mus musculus GN=Cyp3a13 PE... [more]
CP3A9_RAT6.053e-2040.16Cytochrome P450 3A9 OS=Rattus norvegicus GN=Cyp3a9... [more]
CP3A8_MACFA6.053e-2037.90Cytochrome P450 3A8 OS=Macaca fascicularis GN=CYP3... [more]
CP3AV_MESAU1.761e-1936.80Cytochrome P450 3A31 OS=Mesocricetus auratus GN=CY... [more]
CP3AI_RAT2.300e-1938.52Cytochrome P450 3A18 OS=Rattus norvegicus GN=Cyp3a... [more]
CP3AA_MESAU2.300e-1940.16Lithocholate 6-beta-hydroxylase OS=Mesocricetus au... [more]
CP343_HUMAN2.300e-1937.40Cytochrome P450 3A43 OS=Homo sapiens GN=CYP3A43 PE... [more]
CP4AP_PIG3.004e-1939.33Cytochrome P450 4A25 OS=Sus scrofa GN=CYP4A25 PE=2... [more]
CP3AP_MOUSE3.924e-1938.52Cytochrome P450 3A25 OS=Mus musculus GN=Cyp3a25 PE... [more]
C340_ORYLA5.125e-1939.69Cytochrome P450 3A40 OS=Oryzias latipes GN=cyp3a40... [more]

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Properties
Property NameValue
Genbank descriptionC05065E02SK DroRLeaf1 Citrus clementina cDNA clone C05065E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294998 ID=CX294998; Name=CX294998; organism=Citrus clementina; type=EST; length=717bp
GTTTTTGGCAATAATAAGCCAGATTATCATGGATTGAATCACCTCAAAAT
TGTTCAAATGATATTCAACGAGGTACTGAGGCTTTATCCTCCAGCAGTTA
TGCTTGCTCGAGCTGTTAATAAAGAAACGAAACTTGGAAACTTGATATTA
CCCGCTGGGGTTCAAATCAGTTTGCCAGTGATCATGGTTCACCATGATCC
TGAACTTTGGGGTGATGATGCCATTGAGTTTAAACCTGAGAGGTTCTCTG
AAGGAATTTCAAAGGTGACCAGGAATCAAGTTTCTTATTTCCCATTTGCA
TGGGGTCCTAGGATATGCATTGGACTAAATTTCGCCCTGGTTGAGGCGAA
AATTGCTTTGGCAATGATTCTGCAAAATTTCTCATTCGAGTTGTCTCCGT
CCTATGTTCATGCTCCGACCGCAGTTCTAACTCTTCATCCAGAATTCGGT
ACCCACTTGATTCTACGGAAACTGTAGTGTGAGAATAATACAAGTAAATA
GTATATCATCAATAAGATTAGCATGATGCTAAATTTCCTTGCCGTTGTAA
TGAAGTTCAGAGCTTGGGCAGCAGCTGTTTGTGTGTGTATTATACACACA
CACACACACACACACACACACAAATTAGATTTTTGTATTGACAATACGTG
AGTTGAATCCATTTTTAAGGAATCATAATTATCACATCCCACATTGTCAT
TGTTTAGATGGTTTCAT
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