CX294998

Overview
NameCX294998
Unique NameCX294998
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294998 vs. ExPASy Swiss-Prot
Match: C13A6_CAEEL (Putative cytochrome P450 CYP13A6 OS=Caenorhabditis elegans GN=cyp-13A6 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.125e-19
Identity = 52/141 (36.88%), Postives = 76/141 (53.90%), Query Frame = 1
Query:   34 LNHLKIVQMIFNEVLRLYPPAVML-ARAVNKETKLGNLILPAGVQISLPVIMVHHDPELWGDDAIEFKPERFSEGISKVTRNQVSYFPFAWGPRICIGLNFALVEAKIALAMILQNFSFELSPSYVHAPTAV---LTLHPE 444
            L+ LK ++ +  E LRLYP       R   +ET +  +    G+ I +    +HH+P +WG+D  +FKPER+  G  +   +  SY PF  GPR CIG+  A +E KI LA IL+ +SF  + +    P  +   LTL PE
Sbjct:  368 LSKLKYLECVMKETLRLYPLGTTANTRKCMRETTINGVNFDEGMNIQVDTWTLHHNPRIWGEDVEDFKPERWENGACEHLEHNGSYIPFGSGPRQCIGMRLAQMEQKILLAQILKEYSFRTTKN-TQIPVKLVGKLTLSPE 507          
BLAST of CX294998 vs. ExPASy Swiss-Prot
Match: CPXB_BACME (Bifunctional P-450/NADPH-P450 reductase OS=Bacillus megaterium GN=CYP102A1 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.142e-18
Identity = 56/143 (39.16%), Postives = 79/143 (55.24%), Query Frame = 1
Query:   19 PDYHGLNHLKIVQMIFNEVLRLYPPAVMLARAVNKETKLGNLI-LPAGVQISLPVIMVHHDPELWGDDAIEFKPERFSEGISKVTRNQVSYFPFAWGPRICIGLNFALVEAKIALAMILQNFSFELSPSYVHAPTAVLTLHPE 444
            P Y  +  LK V M+ NE LRL+P A   +    ++T LG    L  G ++ + +  +H D  +WGDD  EF+PERF E  S + ++  ++ PF  G R CIG  FAL EA + L M+L++F FE   +Y       LTL PE
Sbjct:  304 PSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGGEYPLEKGDELMVLIPQLHRDKTIWGDDVEEFRPERF-ENPSAIPQH--AFKPFGNGQRACIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKETLTLKPE 443          
BLAST of CX294998 vs. ExPASy Swiss-Prot
Match: CP4AO_PIG (Cytochrome P450 4A24 OS=Sus scrofa GN=CYP4A24 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.543e-18
Identity = 55/148 (37.16%), Postives = 82/148 (55.41%), Query Frame = 1
Query:   34 LNHLKIVQMIFNEVLRLYPPAVMLARAVNKE-TKLGNLILPAGVQISLPVIMVHHDPELWGDDAIEFKPERFSEGISKVTRNQVSYFPFAWGPRICIGLNFALVEAKIALAMILQNFSFELSPSYVHAPTAVLTLHPEFGTHLILRKL 474
            L+ +    M   E LRLYPP   ++R ++K  T      LPAG+ +SL +  +HH+P++W +   EF P RF+ G +   R+  ++ PF+ G R CIG  FA+ E K+A+A+ L  F     PS     T  + L+ + G HL LRKL
Sbjct:  360 LDQMPYTTMCIKEALRLYPPVPGVSRELSKPITFPDGRSLPAGITLSLSIYGLHHNPQVWPNPE-EFDPSRFAPGSA---RHSHAFMPFSGGSRNCIGKQFAMNEMKVAVALTLLRFELAPDPSRKPIATPEVVLNSKNGIHLKLRKL 503          
BLAST of CX294998 vs. ExPASy Swiss-Prot
Match: C13A5_CAEEL (Putative cytochrome P450 CYP13A5 OS=Caenorhabditis elegans GN=cyp-13A5 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.543e-18
Identity = 46/130 (35.38%), Postives = 78/130 (60.00%), Query Frame = 1
Query:   10 NNKPDYHGLNHLKIVQMIFNEVLRLYPPA-VMLARAVNKETKLGNLILPAGVQISLPVIMVHHDPELWGDDAIEFKPERFSEGISKVTRNQVSYFPFAWGPRICIGLNFALVEAKIALAMILQNFSFELS 396
            N +  +  ++ LK ++ +  E LR+YP A ++  R   KET +  + +  G  + +    +H+DP++WG+DA EF+PER+  G  ++   +  Y PF  GPRICIG+  A++E K+ L  IL+ ++FE S
Sbjct:  362 NPEVTFDQISKLKYMECVVKEALRMYPLASIVHNRKCMKETNVLGVQIEKGTNVQVDTWTLHYDPKVWGEDANEFRPERWESG-DELFYAKGGYLPFGMGPRICIGMRLAMMEKKMLLTHILKKYTFETS 490          
BLAST of CX294998 vs. ExPASy Swiss-Prot
Match: CP4AL_PIG (Taurochenodeoxycholic 6 alpha-hydroxylase OS=Sus scrofa GN=CYP4A21 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.322e-18
Identity = 53/148 (35.81%), Postives = 80/148 (54.05%), Query Frame = 1
Query:   34 LNHLKIVQMIFNEVLRLYPPAVMLARAVNKE-TKLGNLILPAGVQISLPVIMVHHDPELWGDDAIEFKPERFSEGISKVTRNQVSYFPFAWGPRICIGLNFALVEAKIALAMILQNFSFELSPSYVHAPTAVLTLHPEFGTHLILRKL 474
            L+ +    M   E LRLYPP   + R ++K  T      LPAG+ +SL +  +HH+P++W +   EF P RF+ G +   R+  ++ PF+ G R CIG  FA+ E K+ +A+ L  F     PS +  P   + L  + G HL LRK+
Sbjct:  360 LDQMPYTTMCIKEALRLYPPVPSVGRELSKPITFPDGRSLPAGIILSLSIYGLHHNPQVWPNPE-EFDPSRFAPGSA---RHSHAFMPFSGGSRNCIGKQFAMNEMKVVVALTLLRFELAPDPSRIPVPIQGIVLKSKNGIHLNLRKI 503          
BLAST of CX294998 vs. ExPASy Swiss-Prot
Match: C13A4_CAEEL (Putative cytochrome P450 CYP13A4 OS=Caenorhabditis elegans GN=cyp-13A4 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.322e-18
Identity = 45/122 (36.89%), Postives = 75/122 (61.48%), Query Frame = 1
Query:   34 LNHLKIVQMIFNEVLRLYPPAVMLA-RAVNKETKLGNLILPAGVQISLPVIMVHHDPELWGDDAIEFKPERFSEGISKVTRNQVSYFPFAWGPRICIGLNFALVEAKIALAMILQNFSFELS 396
            ++ LK ++ +  E LR+YP A ++  R   K+T +  + +  G  + +    +H+DP++WGDDA EFKPER+  G  ++   +  Y PF  GPRICIG+  A++E K+ L  IL+ ++F+ S
Sbjct:  370 ISKLKYMECVVKEALRMYPLASLVHNRKCMKKTNVLGVEIDEGTNVQVDTWTLHYDPKVWGDDASEFKPERWETG-DELFYAKGGYLPFGMGPRICIGMRLAMMEEKLLLTHILKKYTFDTS 490          
BLAST of CX294998 vs. ExPASy Swiss-Prot
Match: THAS_MOUSE (Thromboxane-A synthase OS=Mus musculus GN=Tbxas1 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.338e-18
Identity = 46/128 (35.94%), Postives = 71/128 (55.47%), Query Frame = 1
Query:   19 PDYHGLNH-LKIVQMIFNEVLRLYPPAVMLARAVNKETKLGNLILPAGVQISLPVIMVHHDPELWGDDAIEFKPERFSEGISKVTRNQVSYFPFAWGPRICIGLNFALVEAKIALAMILQNFSFELSP 399
            P+YH L   L  + M+ +E LR+YPPA    R   ++ ++    +PAG  + + V  +HHDPE W +    F PERF+   +++ R   +Y PF  GPR C+G+   L+  K+ +  +L  F FE SP
Sbjct:  381 PEYHSLQEGLPYLDMVISETLRMYPPAFRFTREAAQDCEVLGQRIPAGTVLEIAVGALHHDPEHWPNPE-TFDPERFT-AEARLQRRPFTYLPFGAGPRSCLGVRLGLLVVKLTILQVLHKFRFEASP 506          
BLAST of CX294998 vs. ExPASy Swiss-Prot
Match: C356_FUNHE (Cytochrome P450 3A56 OS=Fundulus heteroclitus GN=cyp3a56 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.400e-18
Identity = 49/131 (37.40%), Postives = 73/131 (55.73%), Query Frame = 1
Query:    4 FGNNKP-DYHGLNHLKIVQMIFNEVLRLYPPAVMLARAVNKETKLGNLILPAGVQISLPVIMVHHDPELWGDDAIEFKPERFSEGISKVTRNQVSYFPFAWGPRICIGLNFALVEAKIALAMILQNFSFEL 393
            F N  P  Y  L  ++ +  + NE LRL+P A  L R      ++  +++P  + + +P   +H DPE+W +    FKPERFS+  +K   +   Y PF  GPR CIG+ FALV  K+A+  ILQ +SF +
Sbjct:  338 FPNKAPVHYQPLMEMEYLDCVINESLRLFPIAARLERVAKAAVEINGIVIPKDMVVMIPTWPLHRDPEIWPEPE-AFKPERFSKK-NKDNIDPYIYMPFGSGPRNCIGMRFALVLIKLAVVEILQQYSFSV 466          
BLAST of CX294998 vs. ExPASy Swiss-Prot
Match: C330_FUNHE (Cytochrome P450 3A30 OS=Fundulus heteroclitus GN=cyp3a30 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 9.665e-18
Identity = 49/131 (37.40%), Postives = 73/131 (55.73%), Query Frame = 1
Query:    4 FGNNKP-DYHGLNHLKIVQMIFNEVLRLYPPAVMLARAVNKETKLGNLILPAGVQISLPVIMVHHDPELWGDDAIEFKPERFSEGISKVTRNQVSYFPFAWGPRICIGLNFALVEAKIALAMILQNFSFEL 393
            F N  P  Y  L  ++ +  + NE LRL+P A  L R      ++  +++P  + + +P   +H DPE+W +    FKPERFS+  +K   +   Y PF  GPR CIG+ FALV  K+A+  ILQ +SF +
Sbjct:  338 FPNKAPVHYQPLMEMEYLDCVINESLRLFPIAARLERVAKAAVEINGVVIPKDMVVMIPTWPLHRDPEIWPEPE-AFKPERFSKK-NKDNIDPYIYMPFGSGPRNCIGMRFALVLIKLAVVEILQQYSFSV 466          
BLAST of CX294998 vs. ExPASy Swiss-Prot
Match: C13AA_CAEEL (Putative cytochrome P450 CYP13A10 OS=Caenorhabditis elegans GN=cyp-13A10 PE=2 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 9.665e-18
Identity = 47/121 (38.84%), Postives = 69/121 (57.02%), Query Frame = 1
Query:   34 LNHLKIVQMIFNEVLRLYPPAVML-ARAVNKETKLGNLILPAGVQISLPVIMVHHDPELWGDDAIEFKPERFSEGISKVTRNQVSYFPFAWGPRICIGLNFALVEAKIALAMILQNFSFEL 393
            L+ LK +  I  E LRLYP   M  +R   + TKLGN+ +  G  + +    +H D ++WGDDA EFKPER+ +        +  Y  F  GPR C+G+  A +E K+ LA IL+ ++FE+
Sbjct:  370 LSKLKYMDCIIKETLRLYPLGTMANSRRCMRATKLGNVEVEVGTMVQVDTWSLHTDTKIWGDDAKEFKPERWLDPNCDQVFQKGGYISFGLGPRQCVGMRLAYMEEKMLLAHILRKYTFEV 490          
The following BLAST results are available for this feature:
BLAST of CX294998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
C13A6_CAEEL5.125e-1936.88Putative cytochrome P450 CYP13A6 OS=Caenorhabditis... [more]
CPXB_BACME1.142e-1839.16Bifunctional P-450/NADPH-P450 reductase OS=Bacillu... [more]
CP4AO_PIG2.543e-1837.16Cytochrome P450 4A24 OS=Sus scrofa GN=CYP4A24 PE=2... [more]
C13A5_CAEEL2.543e-1835.38Putative cytochrome P450 CYP13A5 OS=Caenorhabditis... [more]
CP4AL_PIG3.322e-1835.81Taurochenodeoxycholic 6 alpha-hydroxylase OS=Sus s... [more]
C13A4_CAEEL3.322e-1836.89Putative cytochrome P450 CYP13A4 OS=Caenorhabditis... [more]
THAS_MOUSE4.338e-1835.94Thromboxane-A synthase OS=Mus musculus GN=Tbxas1 P... [more]
C356_FUNHE7.400e-1837.40Cytochrome P450 3A56 OS=Fundulus heteroclitus GN=c... [more]
C330_FUNHE9.665e-1837.40Cytochrome P450 3A30 OS=Fundulus heteroclitus GN=c... [more]
C13AA_CAEEL9.665e-1838.84Putative cytochrome P450 CYP13A10 OS=Caenorhabditi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05065E02SK DroRLeaf1 Citrus clementina cDNA clone C05065E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294998 ID=CX294998; Name=CX294998; organism=Citrus clementina; type=EST; length=717bp
GTTTTTGGCAATAATAAGCCAGATTATCATGGATTGAATCACCTCAAAAT
TGTTCAAATGATATTCAACGAGGTACTGAGGCTTTATCCTCCAGCAGTTA
TGCTTGCTCGAGCTGTTAATAAAGAAACGAAACTTGGAAACTTGATATTA
CCCGCTGGGGTTCAAATCAGTTTGCCAGTGATCATGGTTCACCATGATCC
TGAACTTTGGGGTGATGATGCCATTGAGTTTAAACCTGAGAGGTTCTCTG
AAGGAATTTCAAAGGTGACCAGGAATCAAGTTTCTTATTTCCCATTTGCA
TGGGGTCCTAGGATATGCATTGGACTAAATTTCGCCCTGGTTGAGGCGAA
AATTGCTTTGGCAATGATTCTGCAAAATTTCTCATTCGAGTTGTCTCCGT
CCTATGTTCATGCTCCGACCGCAGTTCTAACTCTTCATCCAGAATTCGGT
ACCCACTTGATTCTACGGAAACTGTAGTGTGAGAATAATACAAGTAAATA
GTATATCATCAATAAGATTAGCATGATGCTAAATTTCCTTGCCGTTGTAA
TGAAGTTCAGAGCTTGGGCAGCAGCTGTTTGTGTGTGTATTATACACACA
CACACACACACACACACACACAAATTAGATTTTTGTATTGACAATACGTG
AGTTGAATCCATTTTTAAGGAATCATAATTATCACATCCCACATTGTCAT
TGTTTAGATGGTTTCAT
back to top